mRNA_L-elsbetiae_contig792.16876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig792.16876.1
Unique NamemRNA_L-elsbetiae_contig792.16876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig792.16876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig792contigL-elsbetiae_contig792:19712..20221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size510
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig792.16876.1prot_L-elsbetiae_contig792.16876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig792 19760..20089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.9992955-UTR-L-elsbetiae_contig792:19711..197591622816875.9992955-UTR-L-elsbetiae_contig792:19711..19759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig792 19712..19759 +
1691683879.9333937-UTR-L-elsbetiae_contig792:19711..197591691683879.9333937-UTR-L-elsbetiae_contig792:19711..19759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig792 19712..19759 +
1622816876.019025-UTR-L-elsbetiae_contig792:20089..202211622816876.019025-UTR-L-elsbetiae_contig792:20089..20221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig792 20090..20221 +
1691683879.9619858-UTR-L-elsbetiae_contig792:20089..202211691683879.9619858-UTR-L-elsbetiae_contig792:20089..20221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig792 20090..20221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.0094736-CDS-L-elsbetiae_contig792:19759..200891622816876.0094736-CDS-L-elsbetiae_contig792:19759..20089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig792 19760..20089 +
1691683879.9510748-CDS-L-elsbetiae_contig792:19759..200891691683879.9510748-CDS-L-elsbetiae_contig792:19759..20089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig792 19760..20089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig792.16876.1

>prot_L-elsbetiae_contig792.16876.1 ID=prot_L-elsbetiae_contig792.16876.1|Name=mRNA_L-elsbetiae_contig792.16876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MKSISTKKTLEYFRSRNSWRTSRLDKRSVNTTGYTLPPKFPIIQVPARKQ
QQPRPQGQSAPKPPRPHVYPPAVCFAATAVPTGSPCRVQAAREMRRPNAK
RCRERALST*
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mRNA from alignment at L-elsbetiae_contig792:19712..20221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig792.16876.1 ID=mRNA_L-elsbetiae_contig792.16876.1|Name=mRNA_L-elsbetiae_contig792.16876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig792:19712..20221+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTCTGATCGAACATTTGTTCGCGAAAAAAAAACAGACTTCTTGCTCAT
GAAAAGCATCAGCACAAAAAAAACATTGGAGTATTTTCGCAGCAGAAATA
GTTGGCGTACATCTCGCCTCGACAAAAGGTCGGTTAATACGACTGGCTAC
ACGCTTCCGCCCAAGTTTCCCATCATTCAAGTGCCAGCGCGGAAGCAGCA
GCAACCCCGCCCCCAAGGACAAAGCGCGCCTAAGCCACCGCGCCCGCATG
TCTACCCCCCTGCTGTCTGCTTTGCAGCTACGGCAGTCCCAACAGGATCG
CCGTGCCGGGTGCAAGCAGCACGGGAAATGCGACGGCCGAACGCCAAGCG
TTGCCGAGAGAGAGCCCTGTCAACATGAAACGAATCGTGGCTATAATAAT
CAGACACATGATTGCACAAAATTCCACCAACCCCAGCCTTGCTCCTCGTC
GAGCGAACGGGTGTGTTGCCGTCAAGAGAGTGCAGCGCGTGACGCCTTTC
CCCGCCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig792:19712..20221+

>mRNA_L-elsbetiae_contig792.16876.1 ID=mRNA_L-elsbetiae_contig792.16876.1|Name=mRNA_L-elsbetiae_contig792.16876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig792:19712..20221+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGCATCAGCACAAAAAAAACATTGGAGTATTTTCGCAGCAGAAA
TAGTTGGCGTACATCTCGCCTCGACAAAAGGTCGGTTAATACGACTGGCT
ACACGCTTCCGCCCAAGTTTCCCATCATTCAAGTGCCAGCGCGGAAGCAG
CAGCAACCCCGCCCCCAAGGACAAAGCGCGCCTAAGCCACCGCGCCCGCA
TGTCTACCCCCCTGCTGTCTGCTTTGCAGCTACGGCAGTCCCAACAGGAT
CGCCGTGCCGGGTGCAAGCAGCACGGGAAATGCGACGGCCGAACGCCAAG
CGTTGCCGAGAGAGAGCCCTGTCAACATGAATGAAAAGCATCAGCACAAA
AAAAACATTGGAGTATTTTCGCAGCAGAAATAGTTGGCGTACATCTCGCC
TCGACAAAAGGTCGGTTAATACGACTGGCTACACGCTTCCGCCCAAGTTT
CCCATCATTCAAGTGCCAGCGCGGAAGCAGCAGCAACCCCGCCCCCAAGG
ACAAAGCGCGCCTAAGCCACCGCGCCCGCATGTCTACCCCCCTGCTGTCT
GCTTTGCAGCTACGGCAGTCCCAACAGGATCGCCGTGCCGGGTGCAAGCA
GCACGGGAAATGCGACGGCCGAACGCCAAGCGTTGCCGAGAGAGAGCCCT
GTCAACATGA
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