mRNA_L-elsbetiae_contig7917.16874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7917.16874.1
Unique NamemRNA_L-elsbetiae_contig7917.16874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7917.16874.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 9.830e-47
Identity = 75/104 (72.12%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:  100 LERAGRLRGGLEEIVAAMPIRVMKRRLAEMGANPSRLETCLEKDECVSLMLGAMLLSREGLLREKGRMPAWVSRLRGWRWSYHFANKDSRRCWLTMADVARTRW 411
            +E A  L GGLEE+VAAMPI+VMKRRL E+GANP+RL  CLEKDECVSLM+G+MLLSR+GLLR+KG++PAW+SR+RGWRWS+HFA+KD++R W+TM D+ART W
Sbjct:  224 IELARSLSGGLEELVAAMPIKVMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPW 327
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7917.16874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE9.830e-4772.12F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7917contigL-elsbetiae_contig7917:6747..8950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.9541721-CDS-L-elsbetiae_contig7917:6746..69741622816875.9541721-CDS-L-elsbetiae_contig7917:6746..6974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7917 6747..6974 +
1691683879.901893-CDS-L-elsbetiae_contig7917:6746..69741691683879.901893-CDS-L-elsbetiae_contig7917:6746..6974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7917 6747..6974 +
1622816875.9691112-CDS-L-elsbetiae_contig7917:8746..89501622816875.9691112-CDS-L-elsbetiae_contig7917:8746..8950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7917 8747..8950 +
1691683879.9134057-CDS-L-elsbetiae_contig7917:8746..89501691683879.9134057-CDS-L-elsbetiae_contig7917:8746..8950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7917 8747..8950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7917.16874.1prot_L-elsbetiae_contig7917.16874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7917 6747..8950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7917.16874.1

>prot_L-elsbetiae_contig7917.16874.1 ID=prot_L-elsbetiae_contig7917.16874.1|Name=mRNA_L-elsbetiae_contig7917.16874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
EDPEEEHRQRRRQRQRQQERRRRWQRRRRRQRALERAGRLRGGLEEIVAA
MPIRVMKRRLAEMGANPSRLETCLEKDECVSLMLGAMLLSREGLLREKGR
MPAWVSRLRGWRWSYHFANKDSRRCWLTMADVARTRWTVRAVL*
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mRNA from alignment at L-elsbetiae_contig7917:6747..8950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7917.16874.1 ID=mRNA_L-elsbetiae_contig7917.16874.1|Name=mRNA_L-elsbetiae_contig7917.16874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2204bp|location=Sequence derived from alignment at L-elsbetiae_contig7917:6747..8950+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATCCAGAAGAAGAACATCGGCAGCGGCGGCGTCAACGGCAGCGGCA
GCAGGAACGGCGGCGGCGTTGGCAGCGGCGGCGGCGGCGGCAGCGGGCCC
TCGAGCGCGCGGGCCGCTTGCGCGGCGGCCTGGAGGAAATCGTCGCGGCC
ATGCCGATCAGGGTCATGAAGCGCCGCCTCGCCGAGATGGGGGCGAACCC
TTCCAGGCTTGAGACCTGCCTCGAAAAGGTGCGCGCGCGTGTGTCTGTGT
GTCCATGCATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGC
GCGCGTGTCTGTGTGTCCATGCGTGTGTGTGTGCGTGTGTGTGCGTTTTC
TTCAATATGTAGCATCGACCGCGCTAGCCGGTTTGACAAAAATGAATAAG
ACGTCAGCCTTTTGCATGTTGTAGCGGGCCAATCGCGTACATAAAAATGA
TTTCCGTGTGGTGTGCGTGCGAGCGTGTATTTTTTCGGATTTTTCTTCTT
GTCTACCTATATTCTGGGGTCGGTCTACATACACCTTTCGGCAAATGTGT
TGACGTATTGGTCGGAACCACACATGGGTGCGTCTTCTGCGTGCGTGTTT
TTCTTCCGTCTATATACTCTGGGATCAGTCTACATACACCTTTTGGCATA
CCTCGTACAAGTATGTGTTAAACGTATTGGTCGGAGTCACACGATCTTAG
GTATAAGTTAGCCTGTGATCACGGGAACTGACCGCATCAAGTGTTGGAGT
AGTACGGACATTGAGAGGTACTGGATGGAGAGATCGGAACGGTTTTTAAT
GTGAAGACAACATACATACATACATACGAGAGGAGGTACGGCGGCGGCCC
GCGGCGGCCCGCGGCGGGCTTGCCCTTGCCCCCGCCGAACACAAGGCGGA
AGCTCTTGGTCAGGACCCGGAGCAGCAAGCGGACTGGCAGGAATAGGGTC
CGGAACGGGAGCTTGGCCAGCCACAGGGCGAGGCGGAGCACCGTGCGGAC
CTGGGGGGGGGGGCGTTTGACGGGGGTTGTATAAGTATGTAAACAGAGGG
AGAGAGGCCCGACAAAAAGGGGCAGCCAGCAATTGCAGCGGTCGTGCACT
CTGGTGTTTGCCCCCCTCCTCCTCTATGACCCCGGCTGGTGGGTATACCG
TAATCATGCGAAGGTTCGCACCCCCGTGTTAGCATTTTTCTAAAGCGTAT
TTCTCCACAACCAGAAGGGTGCGAACACTAACTGATACCTCTCTGGAGAG
CCCCGACGAGACGTCTCGAAAACCACCTTTTTCGGCGGTAGAAAAAAATG
CTAACACGGGGGTGCGAACCTTCGCGTGATTGCAGTAGTTGTCAGGTAAT
AACGTAAAACTCGCCGAAACGTGTAATCAAAGCACGTGGCACTGGGTACC
GCAAGGTGTAGCAACTTACACCGGAATATGTGTTAAGTACGCCGAAAGGG
GACTGACAGGACGCCACACCAGATGGAACGAAAGCATACACGAGCACACA
CGCATGCTGGGGTTTACTGGTGGTTGGTTGTAGTTGTTGTCGTTGTTGTT
GTTGTAAGACCAAGATGCATTCTTGGGGGTCTTGATATATCAGAGCGGTG
CTCTGTTTCGACCACAGCCACAACGACGCCATCGTGTTCGGAAGTAGCAG
CAACAGCAAGCACAACGGCAGCAACATCAAACGACACCAACGGTAGCAGA
AAACAGCAAAACCCCCGACAACACCAACATCAACAATACCATCAACAACA
CCATCACCAACAACAACATCAGCACCCAAACACAATAGCAAAACACCCGA
CAACAAACAACGACAATATCATCAGCAACAACAACATAACAACATCAACA
ACAACATGACGAGATCAACAACAGAACAAAAGCAAGGTCAAACAGCAACA
ACTAACAGCATCACTCACCAACCACCAAACGCTAACAACAACGACACCAC
CACCCGACCAATTGCTACGAATCAACTCAAAACTCGCAACACTCGGGCAG
GACGAGTGCGTCTCGCTGATGCTCGGGGCGATGCTGCTGTCGAGAGAGGG
GCTCCTCCGAGAGAAAGGGCGGATGCCGGCGTGGGTGTCGCGCCTCAGGG
GCTGGCGCTGGAGCTACCACTTCGCCAACAAGGACTCGCGCCGGTGCTGG
CTAACCATGGCCGATGTCGCGAGGACCCGGTGGACGGTGAGAGCTGTGCT
GTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7917:6747..8950+

>mRNA_L-elsbetiae_contig7917.16874.1 ID=mRNA_L-elsbetiae_contig7917.16874.1|Name=mRNA_L-elsbetiae_contig7917.16874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig7917:6747..8950+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATCCAGAAGAAGAACATCGGCAGCGGCGGCGTCAACGGCAGCGGCA
GCAGGAACGGCGGCGGCGTTGGCAGCGGCGGCGGCGGCGGCAGCGGGCCC
TCGAGCGCGCGGGCCGCTTGCGCGGCGGCCTGGAGGAAATCGTCGCGGCC
ATGCCGATCAGGGTCATGAAGCGCCGCCTCGCCGAGATGGGGGCGAACCC
TTCCAGGCTTGAGACCTGCCTCGAAAAGGAAGATCCAGAAGAAGAACATC
GGCAGCGGCGGCGTCAACGGCAGCGGCAGCAGGAACGGCGGCGGCGTTGG
CAGCGGCGGCGGCGGCGGCAGCGGGCCCTCGAGCGCGCGGGCCGCTTGCG
CGGCGGCCTGGAGGAAATCGTCGCGGCCATGCCGATCAGGGTCATGAAGC
GCCGCCTCGCCGAGATGGGGGCGAACCCTTCCAGGCTTGAGACCTGCCTC
GAAAAGGACGAGTGCGTCTCGCTGATGCTCGGGGCGATGCTGCTGTCGAG
AGAGGGGCTCCTCCGAGAGAAAGGGCGGATGCCGGCGTGGGTGTCGCGCC
TCAGGGGCTGGCGCTGGAGCTACCACTTCGCCAACAAGGACTCGCGCCGG
TGCTGGCTAACCATGGCCGATGTCGCGAGGACCCGGTGGACGGTGAGAGC
TGTGCTGTGAGACGAGTGCGTCTCGCTGATGCTCGGGGCGATGCTGCTGT
CGAGAGAGGGGCTCCTCCGAGAGAAAGGGCGGATGCCGGCGTGGGTGTCG
CGCCTCAGGGGCTGGCGCTGGAGCTACCACTTCGCCAACAAGGACTCGCG
CCGGTGCTGGCTAACCATGGCCGATGTCGCGAGGACCCGGTGGACGGTGA
GAGCTGTGCTGTGA
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