mRNA_L-elsbetiae_contig7914.16872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7914.16872.1
Unique NamemRNA_L-elsbetiae_contig7914.16872.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7914.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7914contigL-elsbetiae_contig7914:5300..7161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7914.16872.1prot_L-elsbetiae_contig7914.16872.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7914 5344..7161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.6493156-UTR-L-elsbetiae_contig7914:5299..53431622816875.6493156-UTR-L-elsbetiae_contig7914:5299..5343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7914 5300..5343 -
1691683879.7667744-UTR-L-elsbetiae_contig7914:5299..53431691683879.7667744-UTR-L-elsbetiae_contig7914:5299..5343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7914 5300..5343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.6643262-CDS-L-elsbetiae_contig7914:5343..55331622816875.6643262-CDS-L-elsbetiae_contig7914:5343..5533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7914 5344..5533 -
1691683879.776643-CDS-L-elsbetiae_contig7914:5343..55331691683879.776643-CDS-L-elsbetiae_contig7914:5343..5533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7914 5344..5533 -
1622816875.6818132-CDS-L-elsbetiae_contig7914:7108..71611622816875.6818132-CDS-L-elsbetiae_contig7914:7108..7161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7914 7109..7161 -
1691683879.78539-CDS-L-elsbetiae_contig7914:7108..71611691683879.78539-CDS-L-elsbetiae_contig7914:7108..7161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7914 7109..7161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7914.16872.1

>prot_L-elsbetiae_contig7914.16872.1 ID=prot_L-elsbetiae_contig7914.16872.1|Name=mRNA_L-elsbetiae_contig7914.16872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
GNQNLGIVTGPNTTVVGSRRRPDGFLGVVLWTLDRSSRTRAQGAGQGLVS
QEPRRAGKADGALCQRVEGRDKQVATAQER*
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mRNA from alignment at L-elsbetiae_contig7914:5300..7161-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7914.16872.1 ID=mRNA_L-elsbetiae_contig7914.16872.1|Name=mRNA_L-elsbetiae_contig7914.16872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1862bp|location=Sequence derived from alignment at L-elsbetiae_contig7914:5300..7161- (Laminarionema elsbetiae ELsaHSoW15)
GGGAACCAGAATCTTGGGATCGTGACCGGCCCCAACACCACCGTGGTTGG
TAGGTAAGGGTCGATAGCCTGTAGGACGCCGCAGGGCACGCACAAGGTTG
CGGGATCTGTTTTCGTCTGCCCGCCCTCCCCATTTTTTGCAACACCCGCG
CTGAAAAAGAGGAGTTGAAGCCGACACGAAACACGTTAACATTTCCATTC
GGAACAACGGCGAAGGGAAGGCACAGAGAGCCCTCAAGGCATGATCCTGT
GCGTGCTCAGCTGTGCCAAGCCTCGTGCCTCTCTGCACAATAGTATCGGG
TCTCGGAGCGCGGTGTCCACTTTTTGTTGGCGGAGCGATAGACCAGTCTT
GCGAGTGTTACCAAAGCGAGCGGCGGCGGTGTGTAGGTTCTTGTAGCTAA
TCGGACACAGGATTACAGGATCGCGCCTTTCTGCGTTCTCGGCGACCACC
CCTGGCCGGTGACTCTTCCCAACGCGTCCGGCTCCACGAGGTGGTGATAG
GTTCCCTTGGGGATCATGTCGGGTTTTACATCACTTTTTCAAAACCCAAA
AAACTCTTGCTGTCGTCACGTGTTCGTCTCTAAGCCTAAATACGCCCCGA
CGCCCCCCCCCCCCCCCCCCCCCCCCCCCCAGCTGCTTCCCCCGTCGACC
GTCCCCACCCCCCCNNNNNNNNNNTTCTCTCCCACAACCTGAAAGCCCCC
CCCCCCCCCCCCCCCCCCGGGCCGCCCCCCCGAGGTATCCCGCGGGTTTC
AAGCCCCCCCCCCCCCCCTCCGCGCCGCTTTTGATAACCAACCAACACAC
CCATGCCGCGCGAAGGAAACACCAGTGGCAGCCCGCCGTGCACAGTGCGT
GCCGCCGGTATTTGTTGTTCCGTTTTGGACGCCCTCGCATTCTCTATCGT
ACACTGTGTATTGTACCAATATCTATCTGTCATACATAAGATCGAGTAAC
CAGACAGACCACAACCGTACTCAGAAGCGGCCGGAGATCTGCCTTGGACC
CTGGAGCAACCTGCCTGCAGGTTCTATTGTTACTCTGAGCACACCTCTCC
CGGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAAGTTTAGTTTGAATCCAGTGTATTTCCTGCGGGCAGCGAG
CGCTCTTTGGCATGGCACAGCGTGTGTTGAGGGTGCGATCGAGGTTACGC
GCTTGCTTGCCTTTCCCTCGAAATGCTCAATACCGCCGCTCCTGGTGTAT
CCACATACATACATGCACCGATGGTTGGGGTGTGTGCTATCTTGTCTCGA
ATATCCCGATCCGCCGATGCACACACATACGTATCTCCGATTCCCGCCAC
CGAATACGCATTGATCACCTCGTCGTTGTTGTTATCCCACGAAGCCTGCG
CCATCAGCGGTTGATGGGAACTGAAGTCGTCGAGGCGGAAAAGTTGAGGG
TCAATAGATTGTATGCATTTAAAATAATAGATCAGGGGGTTGGTTGGGTT
CATTTAGTGTTCACTACAGGCCATGGAGACAGAGCGGAGGAGACAAGGTG
TAACTTCAGTTCGCTGCGCGTTTTCCGTGCGCCCTCCCCCCCCTCCAACG
GTAATTTATTATCGTCCGTTTTGTTCAGCCGCCGAAGGCCGGATGGGTTT
CTAGGCGTGGTTTTGTGGACCCTGGACCGCAGCAGCAGGACGAGGGCCCA
AGGGGCTGGTCAAGGGCTGGTGTCTCAAGAGCCCAGGAGAGCTGGCAAGG
CAGACGGTGCGCTCTGTCAGAGAGTCGAGGGTCGCGACAAGCAAGTGGCG
ACGGCACAGGAGCGCTAGCGCCAGCTTTCGGGAAGGGAAAATAGAGCGAG
CGCTTCGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7914:5300..7161-

>mRNA_L-elsbetiae_contig7914.16872.1 ID=mRNA_L-elsbetiae_contig7914.16872.1|Name=mRNA_L-elsbetiae_contig7914.16872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7914:5300..7161- (Laminarionema elsbetiae ELsaHSoW15)
GGGAACCAGAATCTTGGGATCGTGACCGGCCCCAACACCACCGTGGTTGG
TAGGGGAACCAGAATCTTGGGATCGTGACCGGCCCCAACACCACCGTGGT
TGGTAGCCGCCGAAGGCCGGATGGGTTTCTAGGCGTGGTTTTGTGGACCC
TGGACCGCAGCAGCAGGACGAGGGCCCAAGGGGCTGGTCAAGGGCTGGTG
TCTCAAGAGCCCAGGAGAGCTGGCAAGGCAGACGGTGCGCTCTGTCAGAG
AGTCGAGGGTCGCGACAAGCAAGTGGCGACGGCACAGGAGCGCTAGCCGC
CGAAGGCCGGATGGGTTTCTAGGCGTGGTTTTGTGGACCCTGGACCGCAG
CAGCAGGACGAGGGCCCAAGGGGCTGGTCAAGGGCTGGTGTCTCAAGAGC
CCAGGAGAGCTGGCAAGGCAGACGGTGCGCTCTGTCAGAGAGTCGAGGGT
CGCGACAAGCAAGTGGCGACGGCACAGGAGCGCTAG
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