mRNA_L-elsbetiae_contig7913.16870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7913.16870.1
Unique NamemRNA_L-elsbetiae_contig7913.16870.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7913.16870.1 vs. uniprot
Match: D8LDP3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-8
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 GARLGGLGGQAPRGLHGCVAVAAPTSPPXXXXPPRHGDPASPAA----GRAKGRRGSVRSPPAPSGAPRAYGSP 213
            GA+ G + GQAPRGLHG  A+AA  +P       +     + AA    GR +GRRGSVRSPP PSG PRAYGSP
Sbjct:  269 GAKGGTILGQAPRGLHGVAAIAATPAPGSPDSATKRAAATATAALPMKGRGQGRRGSVRSPPRPSGPPRAYGSP 342
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BLAST of mRNA_L-elsbetiae_contig7913.16870.1 vs. uniprot
Match: A0A6H5JUK7_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.790e-7
Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 GQAPRGLHGCVAVAAPTSPPXXXXPPRHGDPASPAA----GRAKGRRGSVRSPPAPSGAPRAYGSP 213
            GQAPRGLHG  A+AA   P       +    A+ AA    GR +GRRG VRSPP PSG PRAYGSP
Sbjct:  528 GQAPRGLHGVAAIAATPVPGSPDSATKRAAAAATAALPVEGRGQGRRGFVRSPPRPSGPPRAYGSP 593
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7913.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDP3_ECTSI1.110e-854.05RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JUK7_9PHAE1.790e-756.06RGS domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7913contigL-elsbetiae_contig7913:6748..7014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDENN domain
Ec32 orthologEc-19_001420.1
Exons1
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.616655-CDS-L-elsbetiae_contig7913:6747..70141622816875.616655-CDS-L-elsbetiae_contig7913:6747..7014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7913 6748..7014 +
1691683879.7568018-CDS-L-elsbetiae_contig7913:6747..70141691683879.7568018-CDS-L-elsbetiae_contig7913:6747..7014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7913 6748..7014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7913.16870.1prot_L-elsbetiae_contig7913.16870.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7913 6748..7014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7913.16870.1

>prot_L-elsbetiae_contig7913.16870.1 ID=prot_L-elsbetiae_contig7913.16870.1|Name=mRNA_L-elsbetiae_contig7913.16870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
AGARLGGLGGQAPRGLHGCVAVAAPTSPPPPSSPPRHGDPASPAAGRAKG
RRGSVRSPPAPSGAPRAYGSPEGRVGTKKRGSRSPAVRG
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mRNA from alignment at L-elsbetiae_contig7913:6748..7014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7913.16870.1 ID=mRNA_L-elsbetiae_contig7913.16870.1|Name=mRNA_L-elsbetiae_contig7913.16870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=267bp|location=Sequence derived from alignment at L-elsbetiae_contig7913:6748..7014+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGCCCGGCTGGGAGGGCTAGGGGGCCAGGCCCCAAGGGGTCTCCA
CGGCTGCGTCGCCGTCGCCGCGCCGACCAGCCCCCCCCCTCCTTCCTCTC
CCCCCCGACACGGTGACCCCGCTTCTCCAGCAGCAGGGAGGGCGAAGGGA
CGGAGGGGCTCCGTGCGGTCGCCGCCCGCGCCCTCGGGGGCCCCGCGGGC
GTACGGTTCTCCCGAGGGAAGGGTGGGCACCAAGAAGAGAGGGTCCCGCT
CGCCGGCGGTGCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7913:6748..7014+

>mRNA_L-elsbetiae_contig7913.16870.1 ID=mRNA_L-elsbetiae_contig7913.16870.1|Name=mRNA_L-elsbetiae_contig7913.16870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig7913:6748..7014+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGCCCGGCTGGGAGGGCTAGGGGGCCAGGCCCCAAGGGGTCTCCA
CGGCTGCGTCGCCGTCGCCGCGCCGACCAGCCCCCCCCCTCCTTCCTCTC
CCCCCCGACACGGTGACCCCGCTTCTCCAGCAGCAGGGAGGGCGAAGGGA
CGGAGGGGCTCCGTGCGGTCGCCGCCCGCGCCCTCGGGGGCCCCGCGGGC
GTACGGTTCTCCCGAGGGAAGGGTGGGCACCAAGAAGAGAGGGTCCCGCT
CGCCGGCGGTGCGGGGGGCCGGCGCCCGGCTGGGAGGGCTAGGGGGCCAG
GCCCCAAGGGGTCTCCACGGCTGCGTCGCCGTCGCCGCGCCGACCAGCCC
CCCCCCTCCTTCCTCTCCCCCCCGACACGGTGACCCCGCTTCTCCAGCAG
CAGGGAGGGCGAAGGGACGGAGGGGCTCCGTGCGGTCGCCGCCCGCGCCC
TCGGGGGCCCCGCGGGCGTACGGTTCTCCCGAGGGAAGGGTGGGCACCAA
GAAGAGAGGGTCCCGCTCGCCGGCGGTGCGGGGG
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