mRNA_L-elsbetiae_contig7911.16868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7911.16868.1
Unique NamemRNA_L-elsbetiae_contig7911.16868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7911.16868.1 vs. uniprot
Match: A0A6H5JTA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA4_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 7.180e-102
Identity = 235/365 (64.38%), Postives = 260/365 (71.23%), Query Frame = 1 
Query:  316 LSLRKRSSELEERLVAARSARASARERREFMKEEAEEARDYGKRLAQEMARLERIARGLPPDEAPSLEKLRRLVATLTEVTLQEQAVLEEGRAREAALRAEIEDFTGA------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLENSADDPLAVPVESKE-KXXXXXXXGRAVGAASSA-TGVTSVPRTTVVSGTXXXXXXTGA--AGKGGREKKTVLEGRALLAEGLHRIEAAYQAAAAEREQAASRLSRLRLAVARRQREEDAAPGHAELLQYLLRFEELGRHAAGRQEQLRRCRAERSTLALTRELLTKQAGLLETIAGGVEEASQAGKPAREAYMRQITKIIEV 1380
            LSLR+R +ELEERL AAR A  SARERREFM+EEAE+ARDYG +LAQEMARL RI R LPPDE+ SLEKLRRLVATLTE+  QEQA LE+G+AREAALR EI +FTG         XXXXXXXXXXXXXXXX                           VLE + DDPLA   E +E +       G  VGA  +A  G  SV RT VV G XXXXXX     A +    KK  LEG+AL AEGLHRIEAAY+ A AERE++A+RLSRLRLAVARRQREEDAA GHAELLQYLLRFEELG+H+  RQEQLRRCRAER  L+LTRELL KQA LLETIAGGVEEAS  GK  REAY+RQI  I+EV
Sbjct:   10 LSLRERGAELEERLQAARIALTSARERREFMEEEAEQARDYGDKLAQEMARLGRITRTLPPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRTEIAEFTGETTGDGXXXXXXXXXXXXXXXXXXXDAAPATAGAPAGEGGGRAGKGREGGGFVLEKAVDDPLAAMAEPQEHQEEDKSGAGNIVGAVPAAGVGTVSVLRTAVVLGXXXXXXXXXXXPAERANHRKKPALEGKALFAEGLHRIEAAYEVAVAEREESAARLSRLRLAVARRQREEDAALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERLMLSLTRELLAKQARLLETIAGGVEEASTGGKGVREAYLRQIKGIVEV 374
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BLAST of mRNA_L-elsbetiae_contig7911.16868.1 vs. uniprot
Match: D7G045_ECTSI (Similar to fidipidine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G045_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.160e-80
Identity = 221/333 (66.37%), Postives = 241/333 (72.37%), Query Frame = 1 
Query:  406 MKEEAEEARDYGKRLAQEMARLERIARGLPPDEAPSLEKLRRLVATLTEVTLQEQAVLEEGRAREAALRAEIEDFTG------AGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLENSADDPLAVPVESKEKXXXXXXXGRAVGAASSATGVTSVPRTTVVSGTXXXXXXTG---AAGKGGREKKTVLEGRALLAEGLHRIEAAYQAAAAEREQAASRLSRLRLAVARRQREEDAAPGHAELLQYLLRFEELGRHAAGRQEQLRRCRAERSTLALTRELLTKQAGLLETIAGGVEEASQAGKPAREAYMRQITKIIE 1377
            M+EEAE+ARDYG +LAQEMARL RI R L PDE+ SLEKLRRLVATLTE+  QEQA LE+G+AREAALRAEI +FTG       GG            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLE + DDPLA        XXXXXXX                         XXXXXX     A  K    KK  LEG+AL AEGLHRIEAAY+ AAAERE++A+RLSRLRLAVARRQREED A GHAELLQYLLRFEELG+H+  RQEQLRRCRAERSTL+LTRELL  QA LLETIAGGVEEAS+ GK  REAY+RQI  I+E
Sbjct:    1 MEEEAEQARDYGNKLAQEMARLGRITRTLAPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRAEIAEFTGETTEDVGGGGDGLGEKPAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVLEKTVDDPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAERKANHRKKPALEGKALFAEGLHRIEAAYEVAAAEREESAARLSRLRLAVARRQREEDVALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERSTLSLTRELLATQARLLETIAGGVEEASKGGKGVREAYLRQIKGIVE 333
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7911.16868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTA4_9PHAE7.180e-10264.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G045_ECTSI3.160e-8066.37Similar to fidipidine n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7911contigL-elsbetiae_contig7911:6368..9024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to fidipidine
Ec32 orthologEc-12_007170.1
Exons4
Model size1394
Cds size1392
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7911.16868.1prot_L-elsbetiae_contig7911.16868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7911 6368..9024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816875.4254055-CDS-L-elsbetiae_contig7911:6367..64931622816875.4254055-CDS-L-elsbetiae_contig7911:6367..6493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 6368..6493 +
1691683879.5684466-CDS-L-elsbetiae_contig7911:6367..64931691683879.5684466-CDS-L-elsbetiae_contig7911:6367..6493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 6368..6493 +
1622816875.4364243-CDS-L-elsbetiae_contig7911:7387..76871622816875.4364243-CDS-L-elsbetiae_contig7911:7387..7687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 7388..7687 +
1691683879.5832782-CDS-L-elsbetiae_contig7911:7387..76871691683879.5832782-CDS-L-elsbetiae_contig7911:7387..7687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 7388..7687 +
1622816875.4468193-CDS-L-elsbetiae_contig7911:8010..83411622816875.4468193-CDS-L-elsbetiae_contig7911:8010..8341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 8011..8341 +
1691683879.6023133-CDS-L-elsbetiae_contig7911:8010..83411691683879.6023133-CDS-L-elsbetiae_contig7911:8010..8341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 8011..8341 +
1622816875.4597406-CDS-L-elsbetiae_contig7911:8389..90241622816875.4597406-CDS-L-elsbetiae_contig7911:8389..9024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 8390..9024 +
1691683879.6122737-CDS-L-elsbetiae_contig7911:8389..90241691683879.6122737-CDS-L-elsbetiae_contig7911:8389..9024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7911 8390..9024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7911.16868.1

>prot_L-elsbetiae_contig7911.16868.1 ID=prot_L-elsbetiae_contig7911.16868.1|Name=mRNA_L-elsbetiae_contig7911.16868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=464bp
RGRSACGRARITAHSRELWRADCTHHISRTAVIMAVAPGGEQVPDDTTNA
VTSTTTTSIPPEGSTSLLDVDVDVDVDVDVDVDASTGPIEAEPRSQMQQQ
RRAEALSLRKRSSELEERLVAARSARASARERREFMKEEAEEARDYGKRL
AQEMARLERIARGLPPDEAPSLEKLRRLVATLTEVTLQEQAVLEEGRARE
AALRAEIEDFTGAGGAGGDSSSSSSPGAPPSAAALAAASAPAAAASGGLP
EERGGGGAVLENSADDPLAVPVESKEKQEEEKEKGRAVGAASSATGVTSV
PRTTVVSGTSGGGNGTGAAGKGGREKKTVLEGRALLAEGLHRIEAAYQAA
AAEREQAASRLSRLRLAVARRQREEDAAPGHAELLQYLLRFEELGRHAAG
RQEQLRRCRAERSTLALTRELLTKQAGLLETIAGGVEEASQAGKPAREAY
MRQITKIIEVGRG*
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mRNA from alignment at L-elsbetiae_contig7911:6368..9024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7911.16868.1 ID=mRNA_L-elsbetiae_contig7911.16868.1|Name=mRNA_L-elsbetiae_contig7911.16868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2657bp|location=Sequence derived from alignment at L-elsbetiae_contig7911:6368..9024+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCGGTCTGCATGCGGCCGTGCTCGAATCACTGCACACAGCCGTGA
GCTCTGGCGCGCCGACTGCACGCACCACATCAGCCGAACAGCAGTCATCA
TGGCGGTGGCCCCGGGCGGCGAGCAGGTAATAAGTGCGGCGTACGCAGGC
AAGTCCTTTCTGTCTGCACATGGGTATGCGAGATACACAGAGAGAATACG
CCTACCGAGGTATGGATGTAGTCGGCGGCGATGCGGTGCAAACAGCCGTC
GGTGGCTACTACTCTATGTGTGCACAGATATTTATGTAGATGTTGCCGGA
TGGGTTCGTGTGTGTGAGCTTGTGAGATGCCCGCGATCAAGGTGTATGCA
TTAGGTCTTTCCAGGCGAGGAAATTGGACACACGAGGAGGGAACAAAGGT
GCGTACCGCAGCCACCCTCTGTCAATATTCAACCATTCCCCAATTAAACC
AAAGTCCAACCAAAAGAACCGACTTCTGAATACTCTCTGACCCTGTTCTC
AAAGTCATACACTTCTCATATTCTTAATTAGCCTCAGACCCACTCAAACT
AAGTGAAATAAAATCCTCCGACTCAACTGAATCCAAGTCAAATCCACGCT
ACCACACCAGAGCAAGTCTTGCCCGAATGATCCTGACTCTTATCCCCATA
TATAAACCACGAAGGCCTTATTGCACGACAGCGAGTTATCTACGGTTCTG
GTCACGCACGACAAGTACGATAAATGGTACAAGCAGCACAACCCCTCTCG
TTTGTTTCGCTAGGAGCCTGCCGCCATGCAGACTACACAGGAAATGCCAG
TCATTCGGAGCGCTTCGGCTTCGACGTCAGCAGATTGAGGCATTTCTCCG
CAAGGAAAATGATTTTTATGGGCGTTTGAATAAGTTTGTCTGTCTCCTAC
TTGTAAGCCGATTTTTTATGTACTTTCAAGTACAACCACCGATGAGAGGA
GATGGACACACAACCCGCCCAAGACTGCTGTCCTCTATGCTAAAAAAAAC
TATTCCAAAACGTTGGACAGGTACCCGACGACACTACCAACGCGGTCACC
AGCACTACCACCACCAGCATTCCTCCGGAAGGGTCGACGTCGCTGCTCGA
TGTCGATGTCGATGTCGATGTCGATGTCGATGTAGATGTCGATGCCAGCA
CTGGACCGATTGAGGCCGAGCCGAGGAGCCAAATGCAACAACAGAGGCGC
GCCGAGGCGTTGAGCCTCCGGAAGCGGAGCTCGGAGCTGGAGGAACGCCT
CGTAGCCGCCCGCAGCGCGCGCGCCTCGGCCCGAGAACGGCGAGAGTTCA
TGAAAGAAGAGGCGGAAGAGGTAACAGCAGCTGTTATTACATTTCATGTC
TACTGCCTCCGTTACTCACTTTGAACCTAATACCATATCCTACCTCTCGG
CAGGAAACTTTTCCGAAGTTTTCTCACTTGCTGTTCCTACATACATACCT
ATATGTACATACACACGTGTTACCACCTTTTTTCGTCAGACAATTGGTTC
ATACCTCGGCTACCACTGCGTTCATACGAGTGTGCCCCCTATCCCCCGCT
CGCCCCCCCTGCCCCCCTGTGCCCCCCCCCCCCCCCCCCCCCACCCCCCA
TCCCACCCACACCAAAACGGTGTCTGTCGAACGACGAGTTCAGGCGAGAG
ACTACGGTAAGAGACTGGCCCAAGAAATGGCTCGGCTGGAGCGCATCGCC
CGAGGCCTCCCCCCGGACGAGGCCCCCTCCCTCGAAAAGCTCCGTCGCCT
CGTCGCCACCCTCACCGAAGTCACGCTCCAGGAACAAGCAGTGCTCGAGG
AAGGACGGGCCCGAGAGGCAGCCCTCCGCGCGGAAATCGAAGACTTCACC
GGCGCCGGTGGCGCCGGCGGCGATAGTAGTAGTAGTAGTAGCCCGGGAGC
ACCGCCGTCCGCGGCTGCCCTAGCCGCGGCATCGGCACCGGCGGCGGCGG
CGAGTGGAGGTCTGCCGGAAGAAAGTGCCGTGGAGGCGGCGGCTTCGAGC
CCAAACGGAGTAGTTGGAGGAGGAGGAGGAGGAGGAGCTGTGCTCGAAAA
CTCGGCGGACGATCCCCTAGCTGTCCCGGTGGAATCGAAAGAGAAGCAGG
AAGAAGAGAAGGAGAAGGGACGGGCGGTGGGAGCGGCATCATCAGCGACG
GGTGTGACCAGCGTGCCGCGAACGACGGTGGTGAGCGGGACGAGCGGCGG
CGGCAACGGCACTGGTGCGGCGGGAAAAGGGGGGAGGGAAAAAAAAACGG
TCCTGGAAGGCAGGGCGCTGCTCGCAGAGGGCTTGCATCGGATAGAAGCC
GCCTACCAAGCCGCGGCCGCCGAGCGAGAACAGGCGGCCTCGCGGCTCTC
CCGGCTGAGGCTGGCCGTGGCCAGGCGGCAGAGGGAGGAGGACGCCGCCC
CGGGGCACGCAGAGCTCCTCCAGTACCTCCTCAGGTTCGAGGAGCTGGGG
CGGCACGCTGCGGGGCGGCAGGAGCAGCTGAGGAGGTGCCGGGCGGAGCG
GTCGACACTGGCCTTGACGAGGGAGCTGCTGACCAAGCAGGCGGGGCTGC
TCGAGACGATCGCCGGCGGGGTGGAGGAGGCCTCGCAGGCCGGGAAGCCG
GCTAGGGAGGCTTACATGAGGCAGATCACGAAGATTATTGAGGTGGGGCG
GGGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7911:6368..9024+

>mRNA_L-elsbetiae_contig7911.16868.1 ID=mRNA_L-elsbetiae_contig7911.16868.1|Name=mRNA_L-elsbetiae_contig7911.16868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig7911:6368..9024+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCGGTCTGCATGCGGCCGTGCTCGAATCACTGCACACAGCCGTGA
GCTCTGGCGCGCCGACTGCACGCACCACATCAGCCGAACAGCAGTCATCA
TGGCGGTGGCCCCGGGCGGCGAGCAGCGGGGGCGGTCTGCATGCGGCCGT
GCTCGAATCACTGCACACAGCCGTGAGCTCTGGCGCGCCGACTGCACGCA
CCACATCAGCCGAACAGCAGTCATCATGGCGGTGGCCCCGGGCGGCGAGC
AGGTACCCGACGACACTACCAACGCGGTCACCAGCACTACCACCACCAGC
ATTCCTCCGGAAGGGTCGACGTCGCTGCTCGATGTCGATGTCGATGTCGA
TGTCGATGTCGATGTAGATGTCGATGCCAGCACTGGACCGATTGAGGCCG
AGCCGAGGAGCCAAATGCAACAACAGAGGCGCGCCGAGGCGTTGAGCCTC
CGGAAGCGGAGCTCGGAGCTGGAGGAACGCCTCGTAGCCGCCCGCAGCGC
GCGCGCCTCGGCCCGAGAACGGCGAGAGTTCATGAAAGAAGAGGCGGAAG
AGGTACCCGACGACACTACCAACGCGGTCACCAGCACTACCACCACCAGC
ATTCCTCCGGAAGGGTCGACGTCGCTGCTCGATGTCGATGTCGATGTCGA
TGTCGATGTCGATGTAGATGTCGATGCCAGCACTGGACCGATTGAGGCCG
AGCCGAGGAGCCAAATGCAACAACAGAGGCGCGCCGAGGCGTTGAGCCTC
CGGAAGCGGAGCTCGGAGCTGGAGGAACGCCTCGTAGCCGCCCGCAGCGC
GCGCGCCTCGGCCCGAGAACGGCGAGAGTTCATGAAAGAAGAGGCGGAAG
AGGCGAGAGACTACGGTAAGAGACTGGCCCAAGAAATGGCTCGGCTGGAG
CGCATCGCCCGAGGCCTCCCCCCGGACGAGGCCCCCTCCCTCGAAAAGCT
CCGTCGCCTCGTCGCCACCCTCACCGAAGTCACGCTCCAGGAACAAGCAG
TGCTCGAGGAAGGACGGGCCCGAGAGGCAGCCCTCCGCGCGGAAATCGAA
GACTTCACCGGCGCCGGTGGCGCCGGCGGCGATAGTAGTAGTAGTAGTAG
CCCGGGAGCACCGCCGTCCGCGGCTGCCCTAGCCGCGGCATCGGCACCGG
CGGCGGCGGCGAGTGGAGGTCTGCCGGAAGAAAGCGAGAGACTACGGTAA
GAGACTGGCCCAAGAAATGGCTCGGCTGGAGCGCATCGCCCGAGGCCTCC
CCCCGGACGAGGCCCCCTCCCTCGAAAAGCTCCGTCGCCTCGTCGCCACC
CTCACCGAAGTCACGCTCCAGGAACAAGCAGTGCTCGAGGAAGGACGGGC
CCGAGAGGCAGCCCTCCGCGCGGAAATCGAAGACTTCACCGGCGCCGGTG
GCGCCGGCGGCGATAGTAGTAGTAGTAGTAGCCCGGGAGCACCGCCGTCC
GCGGCTGCCCTAGCCGCGGCATCGGCACCGGCGGCGGCGGCGAGTGGAGG
TCTGCCGGAAGAAAGAGGAGGAGGAGGAGCTGTGCTCGAAAACTCGGCGG
ACGATCCCCTAGCTGTCCCGGTGGAATCGAAAGAGAAGCAGGAAGAAGAG
AAGGAGAAGGGACGGGCGGTGGGAGCGGCATCATCAGCGACGGGTGTGAC
CAGCGTGCCGCGAACGACGGTGGTGAGCGGGACGAGCGGCGGCGGCAACG
GCACTGGTGCGGCGGGAAAAGGGGGGAGGGAAAAAAAAACGGTCCTGGAA
GGCAGGGCGCTGCTCGCAGAGGGCTTGCATCGGATAGAAGCCGCCTACCA
AGCCGCGGCCGCCGAGCGAGAACAGGCGGCCTCGCGGCTCTCCCGGCTGA
GGCTGGCCGTGGCCAGGCGGCAGAGGGAGGAGGACGCCGCCCCGGGGCAC
GCAGAGCTCCTCCAGTACCTCCTCAGGTTCGAGGAGCTGGGGCGGCACGC
TGCGGGGCGGCAGGAGCAGCTGAGGAGGTGCCGGGCGGAGCGGTCGACAC
TGGCCTTGACGAGGGAGCTGCTGACCAAGCAGGCGGGGCTGCTCGAGACG
ATCGCCGGCGGGGTGGAGGAGGCCTCGCAGGCCGGGAAGCCGGCTAGGGA
GGCTTACATGAGGCAGATCACGAAGATTATTGAGGTGGGGCGGGGATGAG
AGGAGGAGGAGGAGCTGTGCTCGAAAACTCGGCGGACGATCCCCTAGCTG
TCCCGGTGGAATCGAAAGAGAAGCAGGAAGAAGAGAAGGAGAAGGGACGG
GCGGTGGGAGCGGCATCATCAGCGACGGGTGTGACCAGCGTGCCGCGAAC
GACGGTGGTGAGCGGGACGAGCGGCGGCGGCAACGGCACTGGTGCGGCGG
GAAAAGGGGGGAGGGAAAAAAAAACGGTCCTGGAAGGCAGGGCGCTGCTC
GCAGAGGGCTTGCATCGGATAGAAGCCGCCTACCAAGCCGCGGCCGCCGA
GCGAGAACAGGCGGCCTCGCGGCTCTCCCGGCTGAGGCTGGCCGTGGCCA
GGCGGCAGAGGGAGGAGGACGCCGCCCCGGGGCACGCAGAGCTCCTCCAG
TACCTCCTCAGGTTCGAGGAGCTGGGGCGGCACGCTGCGGGGCGGCAGGA
GCAGCTGAGGAGGTGCCGGGCGGAGCGGTCGACACTGGCCTTGACGAGGG
AGCTGCTGACCAAGCAGGCGGGGCTGCTCGAGACGATCGCCGGCGGGGTG
GAGGAGGCCTCGCAGGCCGGGAAGCCGGCTAGGGAGGCTTACATGAGGCA
GATCACGAAGATTATTGAGGTGGGGCGGGGATGA
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