mRNA_L-elsbetiae_contig7903.16860.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7903.16860.1
Unique NamemRNA_L-elsbetiae_contig7903.16860.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7903.16860.1 vs. uniprot
Match: A0A6H5KZV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZV3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.310e-7
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = -2 
Query:    4 APTPEGAVAQLTGSVTAPSSVLSTPASTNVLKDALSDLMNLEDQDDISVSITR 162
            APT EGAV QLTGSVTAPS+VL +PAS N+L  AL +L+ +EDQD I V ITR
Sbjct:  311 APTMEGAVGQLTGSVTAPSTVLGSPASANMLLLALEELLEMEDQDSIRVVITR 363
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7903.16860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZV3_9PHAE7.310e-767.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7903contigL-elsbetiae_contig7903:1736..2924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1190
Cds size1125
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.5087895-CDS-L-elsbetiae_contig7903:1735..28601622816874.5087895-CDS-L-elsbetiae_contig7903:1735..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7903 1736..2860 +
1691683878.798444-CDS-L-elsbetiae_contig7903:1735..28601691683878.798444-CDS-L-elsbetiae_contig7903:1735..2860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7903 1736..2860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.5203853-UTR-L-elsbetiae_contig7903:2860..29241622816874.5203853-UTR-L-elsbetiae_contig7903:2860..2924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7903 2861..2924 +
1691683878.8094528-UTR-L-elsbetiae_contig7903:2860..29241691683878.8094528-UTR-L-elsbetiae_contig7903:2860..2924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7903 2861..2924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7903.16860.1prot_L-elsbetiae_contig7903.16860.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7903 1736..2860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7903.16860.1

>prot_L-elsbetiae_contig7903.16860.1 ID=prot_L-elsbetiae_contig7903.16860.1|Name=mRNA_L-elsbetiae_contig7903.16860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
DPRDGDGNVVLVFQVHQVREGILQDVGGGWGGEHRARGSHRARQLGDRPL
RRGREARRRGDGGARVLLIFRWRYRRRRRRRPVAVSFFCPFFRPRGGGGR
LERHRGCPPLPPLLLFFLRSGGGRRGRRRRHRSAVVVIAGGVGGWRRGRG
VEGRGRGAGLSRLSSGRRRSRRRRRDLRLRLHRRCFGFGSSGRRSRGGDG
GLRRRHRHEGGLRRGSSGRGISGGGGGEGRLGRRGGACGRGSGSVVIAAV
VVGRGLEVVVVGRHRHRQVRRSGRGGIRRREEFTAPHTGVKYFLVLVLLL
LFSFVLEVTAAAVVVGVGLGVLAVPVPVLPRSTSAGAAETSGGGGGSDSA
ATRVLPYDDGGRSSRGRGQRQAFY*
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mRNA from alignment at L-elsbetiae_contig7903:1736..2924+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7903.16860.1 ID=mRNA_L-elsbetiae_contig7903.16860.1|Name=mRNA_L-elsbetiae_contig7903.16860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1189bp|location=Sequence derived from alignment at L-elsbetiae_contig7903:1736..2924+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCTCGTGATGGAGACGGAAATGTCGTCCTGGTCTTCCAGGTTCATCA
AGTCCGAGAGGGCATCCTTCAGGACGTTGGTGGAGGCTGGGGTGGAGAGC
ACCGAGCTAGGGGCAGTCACAGAGCCCGTCAACTGGGCGACCGCCCCCTC
CGGCGTGGGCGCGAAGCTCGGCGCCGGGGTGATGGTGGTGCTCGCGTCCT
CCTCATCTTCCGTTGGCGGTATCGGCGACGGCGACGGCGACGACCCGTCG
CCGTCTCCTTCTTCTGTCCTTTCTTCCGCCCCAGGGGCGGGGGTGGGCGG
CTCGAGCGGCATCGGGGTTGCCCCCCTCTCCCCCCCCTCCTCCTCTTCTT
CTTGAGGAGTGGTGGAGGCAGACGGGGCCGGCGTCGCCGCCACCGCTCCG
CCGTCGTCGTTATCGCCGGTGGCGTCGGGGGTTGGCGGCGGGGGCGGGGT
GTCGAGGGCCGGGGACGGGGTGCGGGCCTCTCCCGACTCTCCAGCGGCCG
GCGCCGGAGTCGTCGCCGCCGCCGGGACCTCCGTCTCCGTCTCCACCGCC
GGTGCTTCGGTTTCGGCAGCAGCGGTCGGCGGAGCCGCGGCGGCGACGGT
GGGCTCCGCCGTCGTCACCGTCACGAGGGTGGGCTCCGCCGTGGCAGCAG
CGGCCGGGGGATCAGTGGCGGGGGCGGCGGCGAGGGTAGGCTCGGCCGTC
GCGGCGGGGCTTGCGGCCGGGGCAGCGGTAGTGTTGTCATCGCCGCCGTC
GTCGTCGGCCGTGGTCTCGAGGTCGTCGTCGTAGGAAGGCACCGGCACCG
GCAGGTCCGACGGAGTGGCCGAGGAGGTATCCGACGTCGTGAGGAGTTTA
CGGCCCCCCACACTGGCGTCAAGTATTTTCTCGTCCTCGTCCTCCTCCTC
CTCTTCTCCTTTGTGCTCGAGGTGACGGCTGCGGCGGTAGTGGTTGGGGT
GGGGTTGGGAGTGTTGGCCGTTCCTGTTCCCGTTCTTCCCCGCAGCACTA
GCGCTGGTGCTGCCGAAACCAGCGGCGGCGGCGGCGGCAGCGACAGCGCC
GCTACGCGCGTGCTTCCCTACGACGACGGCGGCAGGAGCAGCAGAGGCCG
TGGACAGCGGCAGGCATTCTACTGAAACCACCACCAGCACAGCCACTAGC
ACTGCCACCAGCCCCCGCGGGAGTAGCCTGGCCTTAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7903:1736..2924+

>mRNA_L-elsbetiae_contig7903.16860.1 ID=mRNA_L-elsbetiae_contig7903.16860.1|Name=mRNA_L-elsbetiae_contig7903.16860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig7903:1736..2924+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCTCGTGATGGAGACGGAAATGTCGTCCTGGTCTTCCAGGTTCATCA
AGTCCGAGAGGGCATCCTTCAGGACGTTGGTGGAGGCTGGGGTGGAGAGC
ACCGAGCTAGGGGCAGTCACAGAGCCCGTCAACTGGGCGACCGCCCCCTC
CGGCGTGGGCGCGAAGCTCGGCGCCGGGGTGATGGTGGTGCTCGCGTCCT
CCTCATCTTCCGTTGGCGGTATCGGCGACGGCGACGGCGACGACCCGTCG
CCGTCTCCTTCTTCTGTCCTTTCTTCCGCCCCAGGGGCGGGGGTGGGCGG
CTCGAGCGGCATCGGGGTTGCCCCCCTCTCCCCCCCCTCCTCCTCTTCTT
CTTGAGGAGTGGTGGAGGCAGACGGGGCCGGCGTCGCCGCCACCGCTCCG
CCGTCGTCGTTATCGCCGGTGGCGTCGGGGGTTGGCGGCGGGGGCGGGGT
GTCGAGGGCCGGGGACGGGGTGCGGGCCTCTCCCGACTCTCCAGCGGCCG
GCGCCGGAGTCGTCGCCGCCGCCGGGACCTCCGTCTCCGTCTCCACCGCC
GGTGCTTCGGTTTCGGCAGCAGCGGTCGGCGGAGCCGCGGCGGCGACGGT
GGGCTCCGCCGTCGTCACCGTCACGAGGGTGGGCTCCGCCGTGGCAGCAG
CGGCCGGGGGATCAGTGGCGGGGGCGGCGGCGAGGGTAGGCTCGGCCGTC
GCGGCGGGGCTTGCGGCCGGGGCAGCGGTAGTGTTGTCATCGCCGCCGTC
GTCGTCGGCCGTGGTCTCGAGGTCGTCGTCGTAGGAAGGCACCGGCACCG
GCAGGTCCGACGGAGTGGCCGAGGAGGTATCCGACGTCGTGAGGAGTTTA
CGGCCCCCCACACTGGCGTCAAGTATTTTCTCGTCCTCGTCCTCCTCCTC
CTCTTCTCCTTTGTGCTCGAGGTGACGGCTGCGGCGGTAGTGGTTGGGGT
GGGGTTGGGAGTGTTGGCCGTTCCTGTTCCCGTTCTTCCCCGCAGCACTA
GCGCTGGTGCTGCCGAAACCAGCGGCGGCGGCGGCGGCAGCGACAGCGCC
GCTACGCGCGTGCTTCCCTACGACGACGGCGGCAGGAGCAGCAGAGGCCG
TGGACAGCGGCAGGCATTCTACTGAGACCCTCGTGATGGAGACGGAAATG
TCGTCCTGGTCTTCCAGGTTCATCAAGTCCGAGAGGGCATCCTTCAGGAC
GTTGGTGGAGGCTGGGGTGGAGAGCACCGAGCTAGGGGCAGTCACAGAGC
CCGTCAACTGGGCGACCGCCCCCTCCGGCGTGGGCGCGAAGCTCGGCGCC
GGGGTGATGGTGGTGCTCGCGTCCTCCTCATCTTCCGTTGGCGGTATCGG
CGACGGCGACGGCGACGACCCGTCGCCGTCTCCTTCTTCTGTCCTTTCTT
CCGCCCCAGGGGCGGGGGTGGGCGGCTCGAGCGGCATCGGGGTTGCCCCC
CTCTCCCCCCCCTCCTCCTCTTCTTCTTGAGGAGTGGTGGAGGCAGACGG
GGCCGGCGTCGCCGCCACCGCTCCGCCGTCGTCGTTATCGCCGGTGGCGT
CGGGGGTTGGCGGCGGGGGCGGGGTGTCGAGGGCCGGGGACGGGGTGCGG
GCCTCTCCCGACTCTCCAGCGGCCGGCGCCGGAGTCGTCGCCGCCGCCGG
GACCTCCGTCTCCGTCTCCACCGCCGGTGCTTCGGTTTCGGCAGCAGCGG
TCGGCGGAGCCGCGGCGGCGACGGTGGGCTCCGCCGTCGTCACCGTCACG
AGGGTGGGCTCCGCCGTGGCAGCAGCGGCCGGGGGATCAGTGGCGGGGGC
GGCGGCGAGGGTAGGCTCGGCCGTCGCGGCGGGGCTTGCGGCCGGGGCAG
CGGTAGTGTTGTCATCGCCGCCGTCGTCGTCGGCCGTGGTCTCGAGGTCG
TCGTCGTAGGAAGGCACCGGCACCGGCAGGTCCGACGGAGTGGCCGAGGA
GGTATCCGACGTCGTGAGGAGTTTACGGCCCCCCACACTGGCGTCAAGTA
TTTTCTCGTCCTCGTCCTCCTCCTCCTCTTCTCCTTTGTGCTCGAGGTGA
CGGCTGCGGCGGTAGTGGTTGGGGTGGGGTTGGGAGTGTTGGCCGTTCCT
GTTCCCGTTCTTCCCCGCAGCACTAGCGCTGGTGCTGCCGAAACCAGCGG
CGGCGGCGGCGGCAGCGACAGCGCCGCTACGCGCGTGCTTCCCTACGACG
ACGGCGGCAGGAGCAGCAGAGGCCGTGGACAGCGGCAGGCATTCTACTGA
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