mRNA_L-elsbetiae_contig7902.16859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7902.16859.1
Unique NamemRNA_L-elsbetiae_contig7902.16859.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: D8LNY9_ECTSI (DNA repair helicase rad5,16, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.230e-39
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MRRKMPGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNL 225
            MR+K PGAKAVVFSQWTHMLDLA+  I+RGGWT RRLDG MSQQ+RESALK FATDESVTVMLVSLKAGGVGLNL
Sbjct:    1 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNL 75
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.160e-35
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 MRRKMPGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            MR+K PGAKAVVFSQWTHMLDLA+  I+RGGWT RRLDG MSQQ+RESALK FATDESVTVMLVSLKAGGVGLNLTA
Sbjct: 1457 MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTA 1533
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 102 bits (254), Expect = 1.220e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   16 PGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLT 228
            P  KAVVFSQWT+MLDL +  + R GW H RLDG+MSQQ+RE AL+ FAT+  + VML+SLKAGGVGLNLT
Sbjct:   39 PARKAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 109
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A0A9DBF6_ARUDO (CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DBF6_ARUDO)

HSP 1 Score: 86.3 bits (212), Expect = 2.470e-19
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   19 GAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            GAK++VFSQWT  LDL    +SR   +  RLDGT++ Q+RE  +K F+ D+S+ V+L+SLKAGGVG+NLTA
Sbjct:   43 GAKSIVFSQWTAFLDLLQIPLSRNNISFTRLDGTLNHQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTA 113
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A0A9QCJ9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9QCJ9_ARUDO)

HSP 1 Score: 87.8 bits (216), Expect = 7.370e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   19 GAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            GAK++VFSQWT  LDL    +SR  ++  RLDGT++ Q+RE  +K F+ D+S+ V+L+SLKAGGVG+NLTA
Sbjct:  222 GAKSIVFSQWTAFLDLLQIPLSRSNFSFARLDGTLNHQKRERVIKEFSEDKSIMVLLMSLKAGGVGINLTA 292
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: B9SN70_RICCO (DNA repair helicase rad5,16, putative n=5 Tax=Ricinus communis TaxID=3988 RepID=B9SN70_RICCO)

HSP 1 Score: 88.6 bits (218), Expect = 8.850e-19
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   19 GAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            G+K+++FSQWT  LDL    +SR G ++ RLDGT++QQ+RE  +K F+ D+S+ V+L+SLKAGGVG+NLTA
Sbjct:  878 GSKSILFSQWTAFLDLLQIPLSRSGISYVRLDGTLNQQQRERVIKQFSEDDSILVLLMSLKAGGVGINLTA 948
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: UPI0012630830 (DNA repair protein RAD5A isoform X1 n=3 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630830)

HSP 1 Score: 88.6 bits (218), Expect = 8.860e-19
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   19 GAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            G+K+++FSQWT  LDL    +SR   T  RLDGT++QQRRE  LK F+ D +V V+L+SLKAGGVG+NLTA
Sbjct:  883 GSKSIIFSQWTAFLDLLQIPLSRNNITFLRLDGTLTQQRREKVLKQFSEDTNVLVLLMSLKAGGVGINLTA 953
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A0L0H763_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H763_SPIPD)

HSP 1 Score: 88.6 bits (218), Expect = 8.900e-19
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   25 KAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            KAVVFSQWT+MLDL +  +   G+   RLDG MS+Q R  A++SF TD SVTVMLVSLKAGGVGLNLT+
Sbjct: 1105 KAVVFSQWTNMLDLLEPSLRTYGFGFVRLDGKMSRQDRTDAMESFKTDPSVTVMLVSLKAGGVGLNLTS 1173
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: F2U6I7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6I7_SALR5)

HSP 1 Score: 88.6 bits (218), Expect = 8.930e-19
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 MRRKMPGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            MR++    K +VFSQWT MLDL    +  GG+T  RLDG+MSQQ R  AL +F +D + TV L++L++GGVGLNLTA
Sbjct: 1390 MRQEDESNKCIVFSQWTSMLDLIQRAVESGGYTTARLDGSMSQQERSRALATFKSDPTCTVFLITLRSGGVGLNLTA 1466
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BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Match: A0A660KP66_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A660KP66_9ROSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   10 KMPGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESALKSFATDESVTVMLVSLKAGGVGLNLTA 231
            +M G+K++VFSQWT  LDL    +SR      RLDGT+SQQ+RE  LK F+ D ++ V+L+SLKAGGVG+NLTA
Sbjct:  885 RMSGSKSIVFSQWTAFLDLLQIPLSRSNIPFVRLDGTLSQQQREKVLKQFSEDSNILVLLMSLKAGGVGINLTA 958
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7902.16859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY9_ECTSI3.230e-3986.67DNA repair helicase rad5,16, putative (Partial) (F... [more]
A0A6H5KHD4_9PHAE1.160e-3587.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1XFX6_HETAK1.220e-2567.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0A9DBF6_ARUDO2.470e-1956.34CHR903 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0... [more]
A0A0A9QCJ9_ARUDO7.370e-1956.34Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
B9SN70_RICCO8.850e-1956.34DNA repair helicase rad5,16, putative n=5 Tax=Rici... [more]
UPI00126308308.860e-1959.15DNA repair protein RAD5A isoform X1 n=3 Tax=Pistac... [more]
A0A0L0H763_SPIPD8.900e-1966.67Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
F2U6I7_SALR58.930e-1954.55Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A660KP66_9ROSI1.210e-1856.76Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7902contigL-elsbetiae_contig7902:2918..4969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5e-29
Seed eggNOG ortholog2880.D8LNY9
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons3
Model size231
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7902.16859.1prot_L-elsbetiae_contig7902.16859.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7902 2918..4969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.4487236-CDS-L-elsbetiae_contig7902:2917..29951622816874.4487236-CDS-L-elsbetiae_contig7902:2917..2995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 2918..2995 -
1691683878.7645903-CDS-L-elsbetiae_contig7902:2917..29951691683878.7645903-CDS-L-elsbetiae_contig7902:2917..2995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 2918..2995 -
1622816874.4636557-CDS-L-elsbetiae_contig7902:4064..41721622816874.4636557-CDS-L-elsbetiae_contig7902:4064..4172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 4065..4172 -
1691683878.7763717-CDS-L-elsbetiae_contig7902:4064..41721691683878.7763717-CDS-L-elsbetiae_contig7902:4064..4172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 4065..4172 -
1622816874.4757032-CDS-L-elsbetiae_contig7902:4924..49691622816874.4757032-CDS-L-elsbetiae_contig7902:4924..4969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 4925..4969 -
1691683878.7860222-CDS-L-elsbetiae_contig7902:4924..49691691683878.7860222-CDS-L-elsbetiae_contig7902:4924..4969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7902 4925..4969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7902.16859.1

>prot_L-elsbetiae_contig7902.16859.1 ID=prot_L-elsbetiae_contig7902.16859.1|Name=mRNA_L-elsbetiae_contig7902.16859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MRRKMPGAKAVVFSQWTHMLDLADTCISRGGWTHRRLDGTMSQQRRESAL
KSFATDESVTVMLVSLKAGGVGLNLTA
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mRNA from alignment at L-elsbetiae_contig7902:2918..4969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7902.16859.1 ID=mRNA_L-elsbetiae_contig7902.16859.1|Name=mRNA_L-elsbetiae_contig7902.16859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2052bp|location=Sequence derived from alignment at L-elsbetiae_contig7902:2918..4969- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAGGAAGATGCCCGGCGCCAAGGCGGTCGTGTTCTCTCAGGTGAG
GGGGGTGGTGTGGCTTCAAGTCTGGGGTGAAGAAAGTGGGCGGCGTTTAT
GTTAGTTTGCGCAACAGGTTTAGATGCCTTTTGAGGCCGAAACTCGGGTT
TGATGTTTTGGAGGCAAGCTACATTTACGTGTCTACGTACACAGGTAAGT
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGTATAAACTTTTTTTTT
TTTTTTTTTTTTTTCGGTTGTTGTTTTGCTTTTCTCTTNNNNNNNNNNGG
GGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTTTTTT
CGTGTCTACGTACGGGGGTAAGTTTTTTTTTTTTTTTTTTTTTGTCTCTA
ACTGAGGGTACACACTTTTCTTTTTTGTTGATTATGTCCGGTGGTTGTTT
GGCGTGTCTCTCCCACGCCCCTGGGTACTCTCGTTGGCAGGTATGTATGT
ATGTGCATATTGTACACTGAAATATACCCCCGGCAGAAATTCTCCACGCT
CCTCGTCGTTCGTGGCTGGTGTACATACATACATACATGTGGCGAGGTGA
AATCAACCAGCAAGTAAAGCGATGAGATGTGTCTCCACCAGTCTCTGTCC
CGACTCTCTTCGCTTGCCTTGTCTACGCCTACGTATGTATGTACGCATGT
TTTACGTGCCTCCGTCTATGTTTGTATCGAATTCTATCTGCCTGCCCCCC
CTCTCTCCACCTGCCCCCTGCCGCCACTTCATTTCCGTGCCTGGTAGTGG
ACACACATGCTAGATCTGGCGGACACGTGCATCAGTAGGGGAGGCTGGAC
TCACCGAAGGCTGGACGGTACCATGTCTCAGCAACGCCGGGAGTCTGCGC
TGAAGGTAACCCCTGGCACCTGTAGAACCAGACTGCTACATATGCATGCT
GTGGAGATATATTATATTCACTGCAGATGCAAATTAATTCACGTGTGTAT
GAAATCGTTGCGGTAAATAATATGGTATCGTGTACCGAATGTATACCGCA
GCTGCAGCGAAGAGGGGGCCCCGCAGACTGTGCAACACCGATTGTATGTA
TGTACCTACGTTTTCCTTGTCGTGTTTCCATGCGCGCCCATCGTTCCGTG
TGCAGTTTTGATGCTGCTCTTGCACGACCTCGTATGTGATGGTGGCTTGT
GTGGTAGCCGCCTGGGGTATAGTTTCCGGAGGACCACAAAAGCCTCTTCG
CAATGAAAACTAAGAACCAGGATAGTTTTTTGTCGGGGATTCTGCGTATC
TTTTCGGTGAAATGGCCTATGATCTGCTGCTGTGCTGGTGTATGCACTGC
TTTGTACACAACCGCACGCACACACACGGCAAAATGGTGCGTATCGATAG
CGGATAAATATGCAGAAGCAGCGCTGTAGCGAAACGCAGCCAGCCGTCGC
GACGACGATCTACCCGACAGATTCTGGAAAATTCGCCGCATCGTGACGTG
CATTGCGCCGATACCTCGCCTTTGAAACCGTTTTTTTTTTTTGTCTAATT
ATGTGCGAAAGCGAGTGCCTGCCTGCCTGCCTCTTCAAAGCAGAGAGCAC
AGCAGTCAGTGTAACGTAGCAACCCATTCAATGCGCTCGTTTCAACGGAA
ATTCAACATGCACCATCAGAGTGCCTCCTCTATGATACTCCCACAACCGA
CAAAGACGCTCGACCAGCAGCGGGGAAACATTTAAAATGTTGTGGTGCTG
TGGTGCCCAAGATTTCAAGATTTTCTCTAAATTGACATGACACATGCCTA
AATCTCAAGGGTGTGTGTCTTCTTTCTTATACGATTATATTCCCAAAGCC
CGGCCAGCGTTAAGATGTTTCGTTTTACAAATGCATTTTCATCTTGCGTC
ACCCCCGGGCGAGCATGAAACCGACCTCCCGGAATGGGGAAACCTTGTAC
TCCGTATACATCATTATGAACCAGAGCTTCGCGACGGACGAGAGCGTTAC
CGTGATGCTGGTGTCGCTCAAGGCCGGGGGCGTCGGCCTCAACCTCACGG
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7902:2918..4969-

>mRNA_L-elsbetiae_contig7902.16859.1 ID=mRNA_L-elsbetiae_contig7902.16859.1|Name=mRNA_L-elsbetiae_contig7902.16859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig7902:2918..4969- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAGGAAGATGCCCGGCGCCAAGGCGGTCGTGTTCTCTCAGATGCG
GAGGAAGATGCCCGGCGCCAAGGCGGTCGTGTTCTCTCAGTGGACACACA
TGCTAGATCTGGCGGACACGTGCATCAGTAGGGGAGGCTGGACTCACCGA
AGGCTGGACGGTACCATGTCTCAGCAACGCCGGGAGTCTGCGCTGAAGTG
GACACACATGCTAGATCTGGCGGACACGTGCATCAGTAGGGGAGGCTGGA
CTCACCGAAGGCTGGACGGTACCATGTCTCAGCAACGCCGGGAGTCTGCG
CTGAAGAGCTTCGCGACGGACGAGAGCGTTACCGTGATGCTGGTGTCGCT
CAAGGCCGGGGGCGTCGGCCTCAACCTCACGGCCAGCTTCGCGACGGACG
AGAGCGTTACCGTGATGCTGGTGTCGCTCAAGGCCGGGGGCGTCGGCCTC
AACCTCACGGCC
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