mRNA_L-elsbetiae_contig7901.16858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7901.16858.1
Unique NamemRNA_L-elsbetiae_contig7901.16858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7901.16858.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-6
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:    3 HGDPSSWSNFLRSSGLVERETLNHVAR 83
            HGDP+SWS+FLRSSGLVERETLNHVAR
Sbjct:   36 HGDPTSWSSFLRSSGLVERETLNHVAR 62
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BLAST of mRNA_L-elsbetiae_contig7901.16858.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.040e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 HGDPSSWSNFLRSSGLVERETLNHVA 80
            HGDP+SWS+FLRSSGLVERETLNHVA
Sbjct:   36 HGDPASWSSFLRSSGLVERETLNHVA 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7901.16858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6K9_9PHAE1.120e-692.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY3_ECTSI5.040e-692.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7901contigL-elsbetiae_contig7901:4445..5051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size607
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7901.16858.1prot_L-elsbetiae_contig7901.16858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7901 4626..4991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.3917742-UTR-L-elsbetiae_contig7901:4444..46251622816874.3917742-UTR-L-elsbetiae_contig7901:4444..4625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7901 4445..4625 +
1691683878.7301319-UTR-L-elsbetiae_contig7901:4444..46251691683878.7301319-UTR-L-elsbetiae_contig7901:4444..4625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7901 4445..4625 +
1622816874.4165974-UTR-L-elsbetiae_contig7901:4991..50511622816874.4165974-UTR-L-elsbetiae_contig7901:4991..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7901 4992..5051 +
1691683878.7532845-UTR-L-elsbetiae_contig7901:4991..50511691683878.7532845-UTR-L-elsbetiae_contig7901:4991..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7901 4992..5051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816874.4042447-CDS-L-elsbetiae_contig7901:4625..49911622816874.4042447-CDS-L-elsbetiae_contig7901:4625..4991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7901 4626..4991 +
1691683878.7410874-CDS-L-elsbetiae_contig7901:4625..49911691683878.7410874-CDS-L-elsbetiae_contig7901:4625..4991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7901 4626..4991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7901.16858.1

>prot_L-elsbetiae_contig7901.16858.1 ID=prot_L-elsbetiae_contig7901.16858.1|Name=mRNA_L-elsbetiae_contig7901.16858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MSTTTTTTTTRNKSNNVVQMIVEFPEVASSRELVGQYSRVPRLHGGSVGS
TLVLSRIQSGVLKASCRRAGMVAAVLIMRLFGDHHVARMNIAFSDGHLSR
NHISVYVQSGHDGTWRRVHEP*
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mRNA from alignment at L-elsbetiae_contig7901:4445..5051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7901.16858.1 ID=mRNA_L-elsbetiae_contig7901.16858.1|Name=mRNA_L-elsbetiae_contig7901.16858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=607bp|location=Sequence derived from alignment at L-elsbetiae_contig7901:4445..5051+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACGGGGACCCCAGCAGCTGGAGCAACTTCCTGCGCAGCAGCGGGCTG
GTGGAGCGGGAGACGCTCAACCACGTCGCGAGGTGGGCGTGTGGCCGCTG
CTGCTGTTGTTGCGACGCGGCGCAACACTGCTGGTTGTTGTTTTGACAAC
GATACCAGTGTCGTCTTGTAGAGAATGCGGCATGAGCACCACCACCACCA
CCACCACCACCAGAAACAAGAGCAACAACGTCGTGCAGATGATTGTCGAG
TTTCCGGAAGTTGCGAGCTCTCGAGAGTTGGTTGGCCAATACAGCAGAGT
TCCACGGCTTCACGGCGGTAGTGTGGGGTCGACCCTAGTTTTGTCGCGGA
TTCAGTCAGGAGTTTTGAAAGCGTCTTGCCGCAGAGCTGGCATGGTTGCG
GCGGTGCTCATCATGAGGCTCTTTGGCGACCACCACGTGGCACGCATGAA
CATCGCGTTTTCTGACGGCCATCTATCCAGGAATCACATCAGCGTTTACG
TTCAATCCGGCCACGACGGGACGTGGCGTAGGGTCCATGAACCCTAACCC
TTGAGTTGCGTGCCCGGTGTCTTTTTTTATGAATGTCCTAACAAATGTCA
GCGGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7901:4445..5051+

>mRNA_L-elsbetiae_contig7901.16858.1 ID=mRNA_L-elsbetiae_contig7901.16858.1|Name=mRNA_L-elsbetiae_contig7901.16858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig7901:4445..5051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCACCACCACCACCACCACCACCACCAGAAACAAGAGCAACAACGT
CGTGCAGATGATTGTCGAGTTTCCGGAAGTTGCGAGCTCTCGAGAGTTGG
TTGGCCAATACAGCAGAGTTCCACGGCTTCACGGCGGTAGTGTGGGGTCG
ACCCTAGTTTTGTCGCGGATTCAGTCAGGAGTTTTGAAAGCGTCTTGCCG
CAGAGCTGGCATGGTTGCGGCGGTGCTCATCATGAGGCTCTTTGGCGACC
ACCACGTGGCACGCATGAACATCGCGTTTTCTGACGGCCATCTATCCAGG
AATCACATCAGCGTTTACGTTCAATCCGGCCACGACGGGACGTGGCGTAG
GGTCCATGAACCCTAAATGAGCACCACCACCACCACCACCACCACCAGAA
ACAAGAGCAACAACGTCGTGCAGATGATTGTCGAGTTTCCGGAAGTTGCG
AGCTCTCGAGAGTTGGTTGGCCAATACAGCAGAGTTCCACGGCTTCACGG
CGGTAGTGTGGGGTCGACCCTAGTTTTGTCGCGGATTCAGTCAGGAGTTT
TGAAAGCGTCTTGCCGCAGAGCTGGCATGGTTGCGGCGGTGCTCATCATG
AGGCTCTTTGGCGACCACCACGTGGCACGCATGAACATCGCGTTTTCTGA
CGGCCATCTATCCAGGAATCACATCAGCGTTTACGTTCAATCCGGCCACG
ACGGGACGTGGCGTAGGGTCCATGAACCCTAA
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