mRNA_L-elsbetiae_contig790.16855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig790.16855.1
Unique NamemRNA_L-elsbetiae_contig790.16855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig790.16855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig790contigL-elsbetiae_contig790:30244..30862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size619
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig790.16855.1prot_L-elsbetiae_contig790.16855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig790 30485..30847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.7292485-UTR-L-elsbetiae_contig790:30243..304841622816873.7292485-UTR-L-elsbetiae_contig790:30243..30484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 30244..30484 +
1691683878.1568828-UTR-L-elsbetiae_contig790:30243..304841691683878.1568828-UTR-L-elsbetiae_contig790:30243..30484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 30244..30484 +
1622816873.7510564-UTR-L-elsbetiae_contig790:30847..308621622816873.7510564-UTR-L-elsbetiae_contig790:30847..30862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 30848..30862 +
1691683878.18102-UTR-L-elsbetiae_contig790:30847..308621691683878.18102-UTR-L-elsbetiae_contig790:30847..30862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 30848..30862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.7397585-CDS-L-elsbetiae_contig790:30484..308471622816873.7397585-CDS-L-elsbetiae_contig790:30484..30847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 30485..30847 +
1691683878.16932-CDS-L-elsbetiae_contig790:30484..308471691683878.16932-CDS-L-elsbetiae_contig790:30484..30847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 30485..30847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig790.16855.1

>prot_L-elsbetiae_contig790.16855.1 ID=prot_L-elsbetiae_contig790.16855.1|Name=mRNA_L-elsbetiae_contig790.16855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MLKYTHACRTTHTIHVYVRVTVTAAGAAKGRSDGFKKAPFPKKKKEKKKK
EACGTTQEVVVPPRLYCAVPQKIKKLNTNKQKDEKDGNHKIFDKREKGAR
GKKGTGRYIRERERVQESVV*
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mRNA from alignment at L-elsbetiae_contig790:30244..30862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig790.16855.1 ID=mRNA_L-elsbetiae_contig790.16855.1|Name=mRNA_L-elsbetiae_contig790.16855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig790:30244..30862+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCAACACTTAACTGCTACAAGCCCTATGCCTTGGCCCGAAGGCACCC
CCGGATTCTCGACCTCTTCGCATTCTTCAAAAAAGGTCACCCGCTGCTTA
TCTTGTGGGCAGCTTTTCTTCCCCGCCGCATTGTTTTTCCCTAACTCTCG
CAAACTACAGCAGTACCGCCGTGGGGCCCCCTCCGCTAACGGTACATAAC
AAACATATCATCTCGCAAAAAACAACGAACAATCGTCAAAAATGTTAAAA
TATACGCATGCATGTAGAACCACCCACACCATCCATGTGTACGTACGTGT
GACGGTGACAGCAGCGGGTGCCGCCAAGGGGCGAAGCGACGGATTCAAAA
AAGCGCCTTTTCCAAAAAAGAAAAAAGAAAAAAAGAAAAAAGAGGCGTGC
GGTACAACACAAGAAGTCGTAGTGCCCCCCCGTCTTTACTGCGCTGTCCC
GCAAAAAATAAAAAAGCTGAATACAAACAAACAGAAAGACGAAAAGGACG
GCAATCATAAAATATTCGACAAGCGGGAAAAAGGGGCTCGAGGAAAGAAA
GGCACAGGCAGGTATATACGAGAGAGAGAGAGAGTACAGGAGAGCGTGGT
GTGAATGTTCTCACAAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig790:30244..30862+

>mRNA_L-elsbetiae_contig790.16855.1 ID=mRNA_L-elsbetiae_contig790.16855.1|Name=mRNA_L-elsbetiae_contig790.16855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig790:30244..30862+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAAATATACGCATGCATGTAGAACCACCCACACCATCCATGTGTA
CGTACGTGTGACGGTGACAGCAGCGGGTGCCGCCAAGGGGCGAAGCGACG
GATTCAAAAAAGCGCCTTTTCCAAAAAAGAAAAAAGAAAAAAAGAAAAAA
GAGGCGTGCGGTACAACACAAGAAGTCGTAGTGCCCCCCCGTCTTTACTG
CGCTGTCCCGCAAAAAATAAAAAAGCTGAATACAAACAAACAGAAAGACG
AAAAGGACGGCAATCATAAAATATTCGACAAGCGGGAAAAAGGGGCTCGA
GGAAAGAAAGGCACAGGCAGGTATATACGAGAGAGAGAGAGAGTACAGGA
GAGCGTGGTGTGAATGTTAAAATATACGCATGCATGTAGAACCACCCACA
CCATCCATGTGTACGTACGTGTGACGGTGACAGCAGCGGGTGCCGCCAAG
GGGCGAAGCGACGGATTCAAAAAAGCGCCTTTTCCAAAAAAGAAAAAAGA
AAAAAAGAAAAAAGAGGCGTGCGGTACAACACAAGAAGTCGTAGTGCCCC
CCCGTCTTTACTGCGCTGTCCCGCAAAAAATAAAAAAGCTGAATACAAAC
AAACAGAAAGACGAAAAGGACGGCAATCATAAAATATTCGACAAGCGGGA
AAAAGGGGCTCGAGGAAAGAAAGGCACAGGCAGGTATATACGAGAGAGAG
AGAGAGTACAGGAGAGCGTGGTGTGA
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