mRNA_L-elsbetiae_contig790.16854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig790.16854.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI) HSP 1 Score: 400 bits (1029), Expect = 3.350e-129 Identity = 205/290 (70.69%), Postives = 232/290 (80.00%), Query Frame = 1 Query: 73 EGPPPKFMLAGDNTGSGIDYNVLDKNSWQILEDYCKKWGLKQAHLESIYSRFARTIARTEHLDFTQKPQFHASLDFLADEFMMTAGEFAAQLFIQTWFLRRKRGLKPPKDRRCVDFTRLVIMCCDLARLGDYELLANLWTCVLHRFGGILPGGTVNLDTRLNTELVEEVITVLHASSDKKLDLLVGMLLAESEELDGLEVRGK--EPKSVASCLSSSFSVSSEGATGTERKGVGKV-ELQDDEDAEGSGGRA--KRYLTLRSVLRFSFQHPPLLFPAVQFQRVLRSKIIG 927 EGPP KF+LAGD+TGSGI+YN+LD SWQ LE YCKKWG+KQAHLESIYSRFARTI RTEHLDFT KPQ+HASLDFLADEFM TAGEFAAQ+FIQTWFLRRKRGL PP+DRRCVDFTRLVIMC DLARLGDYELL NLW CVLHRF GILP GTV+LDTR+N ELV EVITVLH + DKKLDLL+GMLL ESEE+ E++G + ++S T +G K+ + E+AEG+ +A +RYLTLRS+LRFSFQHPPL+FP VQFQRVLR KIIG Sbjct: 32 EGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLINLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHTALDKKLDLLIGMLLEESEEV---EIQGDVASTRGLSSTXXXXXXXXXXXXXRTGEEGQRKIIHKSNGEEAEGAPSQAQRRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 318
BLAST of mRNA_L-elsbetiae_contig790.16854.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE) HSP 1 Score: 281 bits (719), Expect = 3.310e-80 Identity = 246/620 (39.68%), Postives = 302/620 (48.71%), Query Frame = 1 Query: 988 SLGLPDTYDDIFDRIESRREAWVVASGHILVHAFEPPPR-----TGGATSSASLC-DSQGGGAQR-----GRGGGRGEGSRESDGVDGDERAQLYDKRYRQLLDNCVQPQWYQVADEPAP---TVPGAVGGGRVPALALALTRFKATVKSGATATPAPTPPAGSTPRARAAREESNPSDTTGTTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAYLSDCSEGRRS-RSXXXXXXXXXXXXXXXXXXXXXPAPGTKICAICLRKPSPAALCRRCGRRAVKAFKDKQGSRRARVILVPYGASFGIGEPSALQGGGDAVNRWVRLLDDESGAYFYYNAHYDTSVWRSGMELRKPTPVHKTVRRXXXXXXXXXXXXXX------SATSGRSTSPPASPVXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRIVLQKTKTMLSAASMVALQAATG-------------------------VAGSSSPDGGGASDRPSTATPTIKPALKLPGSPPPSSPKKNAAA-PFTAGASP-RNRVVVLVEGDGE--VVLDAHKRIYPPSRLISWEDAEKAAAAAAAVMPGGMEGVAPGAGLGFGRGRQSSSRGESATPAG 2697 SLGLP+ Y DIFDRIESR AW+VA+GH+L+HA +PPPR G +SS++LC D + G +R GR GGRG+ DG +YR+LLDNC++P W++ E TV AVGG +P+L ALTR + S ++ P T R N S ++PA S RRS R PG K CA+CLR+ SPAA+CR+CGRRA KA KD+ GSR+ARVILVPYG FG+GE ALQ GD+V RWVRLLDDE+GA FY+N HY +SVW+SG+EL KP PV K R XXXXXXXXXXXX +A+ RST+PPA ++++T LS ASM AL+AA G + G +S R K A + PS P+KNA+A P A ASP RNRVVV GD E VVLDAH+RIYPP RL+SWED E AA AA GM+GV+P G G GR+S S G S AG Sbjct: 4 SLGLPNAYCDIFDRIESRGAAWLVATGHLLLHALDPPPRGDAPAAGSDSSSSNLCNDGKDAGGRRAMSGEGRDGGRGD--------DGQXXXXXXXXQYRRLLDNCLEPSWHEKKSEKTAATKTVIEAVGGKEMPSLTAALTRLTNSSTSATSSMPDST------------RSAKNKSIGQVSSPAVTVPQEGSPDNNLQAKPRPPSTPPSPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGNSTGTRSPAANTRLPATTAVEPGGKTCAVCLRRSSPAAMCRKCGRRAAKALKDRAGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXXAVVGSPNSAASVPRSTTPPAPGSPAARALPMARAATNPRAMGMAASGSIVHRTALVRRTMMALSTASMAALRAAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTSSPRTIIERAMEKAAAVSSPASSPSPPQKNASASPTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELA---GMKGVSPRPGTGV-SGRKSYSHGTSGDSAG 599 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig790.16854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig790.16854.1 >prot_L-elsbetiae_contig790.16854.1 ID=prot_L-elsbetiae_contig790.16854.1|Name=mRNA_L-elsbetiae_contig790.16854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=899bp NRNKLDTRASASSDEEDSGEEHKAEGPPPKFMLAGDNTGSGIDYNVLDKNback to top mRNA from alignment at L-elsbetiae_contig790:23715..28924+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig790.16854.1 ID=mRNA_L-elsbetiae_contig790.16854.1|Name=mRNA_L-elsbetiae_contig790.16854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5210bp|location=Sequence derived from alignment at L-elsbetiae_contig790:23715..28924+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig790:23715..28924+ >mRNA_L-elsbetiae_contig790.16854.1 ID=mRNA_L-elsbetiae_contig790.16854.1|Name=mRNA_L-elsbetiae_contig790.16854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5394bp|location=Sequence derived from alignment at L-elsbetiae_contig790:23715..28924+ (Laminarionema elsbetiae ELsaHSoW15)back to top |