mRNA_L-elsbetiae_contig790.16852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig790.16852.1
Unique NamemRNA_L-elsbetiae_contig790.16852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI)

HSP 1 Score: 534 bits (1376), Expect = 1.110e-185
Identity = 292/423 (69.03%), Postives = 324/423 (76.60%), Query Frame = 1
Query:   49 MLAVASSGGCFLFRGSASALGLFGQVGWLRPLQRQPPAYTSQML-------QSWAEGGAQG-STGIIYTPRHSADAATLQRTLQRPSRLLGTSSAVPPHREVA-DSGELKSPLTPPNNDNALAEARRLARFDEEGEYRVFRELLEGKKTRFVSRVSYDGTKFNGFQLQ-NGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNADEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGVRDSCLIYAAPAHGLTLETVLYDGY 1287
            MLA   SGG  L RG   A+GL        P    P      +L       Q W  G   G S G I     + D ++  R L+     + T S + PH  V  D      P +  NN++  A+ARR ARFDEEGEYRVFRELLEGKKTRFVSRV YDGT + GFQLQ +GLPTVQG LEKALS RFQTYVPVVAAGRTDTGVH+VGQA+HFDLPNA+EDL+QL YSMNQMMPEDVRVWNMSVAPPS PWQVEKGWPWSSMLNARGK YSYRLFVG + SPLDRLYRAHAS+AAGSPI+V+LLY+TIPK  G+HDFAGFSNEV +RATLKK+DGLGEFNT RTVYSAEIIDEG GNI++ FHLDGALYRMVRNMVG LLAVAAGRL+PE++DEIF T VRDS LIYAAPAHGLTL+TVLYDGY
Sbjct:    1 MLAAVVSGGFTLLRG---AVGL--ATATAVPAPPLPSHVAMPVLCRARPRHQRWPNGSIVGPSAGFIS--HLAVDPSSATRVLR-----VCTPSTIAPHGGVEEDLPRSTPPRSTTNNESQQAKARREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGY 411          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR)

HSP 1 Score: 203 bits (517), Expect = 1.720e-57
Identity = 120/287 (41.81%), Postives = 168/287 (58.54%), Query Frame = 1
Query:  463 KTRFVSRVSYDGTKFNGFQLQNGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNA-----DEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGW--------PWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGVRDSCLI-YAAPAHGLTLETVLYD 1281
            K R  +RV+YDGT + G+Q Q   PTVQGALE AL ++F   + VV A RTDTGVHA GQA+HFD+P A      E   +  Y++NQM+P DVRV  +SVAP   P +V            PW ++ NA+GK+Y+YR+    +  PL RLYR H  +A       ELL     KF G HDF+ F+N  +              N  R ++SA +I EG G  ++ F ++GA+YRM+RN++GT+L+V+ G +    +D +F +  +D  L+  +APA GL LE V+YD
Sbjct:   53 KQRIRARVAYDGTLYRGWQYQTDQPTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPPGFVPP---VLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFAS--KDRRLVPKSAPAKGLCLEKVIYD 334          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN)

HSP 1 Score: 196 bits (497), Expect = 5.230e-55
Identity = 122/281 (43.42%), Postives = 158/281 (56.23%), Query Frame = 1
Query:  466 TRFVSRVSYDGTKFNGFQLQ-NGLPTVQGALEKALSQRFQ-TYVPVVAAGRTDTGVHAVGQAIHFDLPNAD---EDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQ-IPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGVRDSCL-IYAAPAHGLTLETVLYDGY 1287
            TR+  RV+YDGT+F G+Q+Q  G  TVQG L  AL  RF    +P + A RTD GVHA GQ  H DLP A      L  L + +N+++P+D RV ++  AP   PWQ  +G PW ++ NA GK Y+YRL   +    PL RLYR H    A   +D   L   +  F GEHDFA F+N     A      G    +T R + SA ++DEG G+  + F LDGALY+MVRN+VG  +AVA G L  + +  +   G R +     AAPA GL LE V YD Y
Sbjct:   33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHV---AYRDVDFGRLDDALSCFVGEHDFAAFANN----APGLDPSGAAR-STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO)

HSP 1 Score: 194 bits (492), Expect = 3.650e-54
Identity = 120/292 (41.10%), Postives = 165/292 (56.51%), Query Frame = 1
Query:  469 RFVSRVSYDGTKFNGFQLQ-NGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNA-DEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPW--QVEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEII--DEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGV---------------RDSCLIYAAPAHGLTLETVLYD 1281
            R+ +RV+YDG  F+GFQLQ  G  TVQG LE  L QR    V +V AGRTDTGVHA GQAIHFDL +   E L+Q+ +S+N M+P DV +WN+S+AP  D    Q  + + W+ + N+ GK+YSYRL +  + SPL+R +R H     G  +D+ LL R +  + G HDF  F+  ++     +++ G    +T RTVYSA  I  DE  G  ++ FHL GALY+ VRNMVGT +  +   +  E   ++                    R+      AP  GLTLE V +D
Sbjct:   23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEAN---QRRSGR-TVSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFD 310          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.820e-54
Identity = 118/284 (41.55%), Postives = 159/284 (55.99%), Query Frame = 1
Query:  472 FVSRVSYDGTKFNGFQLQNG-LPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNADED--------LAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGV-----RDSCLIYAAPAHGLTLETVLYD 1281
            + ++V YDG  F GFQLQ G   TVQG LEKAL +RFQ  + V+ A RTD GVH+ GQ +HFDLP +           +A L Y +NQM+PEDVRV+ ++  P   P Q ++G PWS+ +NAR K+Y+YRL    + +PLD   RAH       P+D+ +L  T+           FS++ D+ A L    G G+ +T RTV    +     G I +   LDGALY+MVR MVG  +AVAAGR+   ++     +G       D      APA GLTLE V Y+
Sbjct:   80 YTAKVMYDGVGFRGFQLQPGNYRTVQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLW-PVDLGVLEATL----------AFSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS)

HSP 1 Score: 191 bits (485), Expect = 9.180e-54
Identity = 117/282 (41.49%), Postives = 164/282 (58.16%), Query Frame = 1
Query:  481 RVSYDGTKFNGFQLQNGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDL--------PNADEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQ-IPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEG-------EGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGVRDSCLIYAAPAHGLTLETVLY 1278
            RV+Y GT FNG+QLQ G  TVQG +E+ L++RF   +PVV AGRTD GVHA GQAIHFDL        P    ++ Q  +SMN+MMP D+R++++ +AP +         PW ++  A+ K YSYRL +G  + +P++R  R H        +D+E L   +  + G HDF  F  ++++ A  KK++     NT RTV+  E+I +        EGN ++ F L GALY+MVRNMVGT + V  GR+K E + E+ +   R       AP  GLTLE V Y
Sbjct:    1 RVAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEILQ--HSMNRMMPLDIRMFHLQLAPYT---------PWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHFVH-----LDMERLESILQLYVGTHDFGAFGGQLEQNA--KKRNDGKRINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIPDRKDNPSKPAPPEGLTLECVYY 264          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 9.620e-54
Identity = 124/294 (42.18%), Postives = 161/294 (54.76%), Query Frame = 1
Query:  469 RFVSRVSYDGTKFNGFQLQNGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNADE---------DLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQ----VEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTG---------VRDSCLIYAAPAHGLTLETVLYDG 1284
            R+ +RV+YDGT FNG+Q Q    T+QG +E  LS+RF   V +V AGRTD GVHA GQA HFDL  ADE         DL QL  S+N M+  D+RVWN   APP   ++    +E+   W  + NA  K+YSYR+       PL R  R H       P ++ELL   +  F G HDF  F+  +D     ++K G     T RTVY+  +++EG GN ++ F L GALY+MVRNM+GT LAVA GRL+ + + E              VR       A   GLTLE V +DG
Sbjct:   90 RYRARVAYDGTGFNGWQTQAKGRTIQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDL-RADEIGVADSKCFDL-QLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVF----DPTNIELLRTALQHFEGTHDFRAFAGAIDAN---ERKSGK-VLGTIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAPEGLTLEHVYFDG 373          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH)

HSP 1 Score: 185 bits (470), Expect = 1.540e-50
Identity = 112/284 (39.44%), Postives = 159/284 (55.99%), Query Frame = 1
Query:  469 RFVSRVSYDGTKFNGFQLQNG--LPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNAD----EDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPK----FAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRL-KPEIVDEIFRTGVRDSCLIYAAPAHGLTLETVLYDGY 1287
            R+V+RVSYDGT + G+Q Q+     T+QG + + LS+R    V +  AGRTD GVHA GQ IHFDL + +    + +    + +NQM+P D+RV+NMS+APP    Q+  G P+ +  +A GK Y YR    Q   P+ R    H  +        E  Y T+P     F G HDFA F N+V +     +   + E++T RT+YS + IDEG G  ++ FH+  ALY+M+RNMVG  ++VA G++ K +IV  +     R +      P  GL LE V YD Y
Sbjct:   75 RYVARVSYDGTAYRGWQQQSQPRTKTIQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDSIPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYR--------EYDYSTLPDCLQCFVGPHDFACFGNKVKQFVKDFETKPI-EYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: L1IVY1_GUITC (tRNA pseudouridine synthase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVY1_GUITC)

HSP 1 Score: 182 bits (462), Expect = 2.430e-50
Identity = 98/236 (41.53%), Postives = 142/236 (60.17%), Query Frame = 1
Query:  460 KKTRFVSRVSYDGTKFNGFQLQNGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAIHFDLPNADEDLAQLTYSMNQMMPEDVRVWNMSVAPPSD--PWQVEKGWPWSSMLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAV 1161
            K  R+   V YDGT +NGFQLQ+  P++QG LE  LS++ Q    VV AGRTD+GVH+ GQ +HFD      DL +  + MN M+P DV++  +      D  P  + +   W ++ +AR K+YSYR+F+G++  P+ R  R H  +     +D++LL      F G HDF+ FSN     +T+         +T RT+Y   ++ EGEGN+++ F LDGALY+MVRN+VGT+LAV
Sbjct:   30 KTFRYRCNVMYDGTNYNGFQLQHYQPSIQGLLETVLSRKLQRRTRVVGAGRTDSGVHSRGQVVHFDSSENITDLQKFQHGMNLMLPLDVKICGLEHVQDLDFVP-HLNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYRN----VDLDLLREVAAMFEGTHDFSAFSNTRGDNSTM---------DTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAV 251          
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Match: A0A8J2SCD1_9STRA (tRNA pseudouridine synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCD1_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.060e-50
Identity = 116/280 (41.43%), Postives = 156/280 (55.71%), Query Frame = 1
Query:  460 KKTRFVSRVSYDGTKFNGFQLQNGLPTVQGALEKALSQRFQ-TYVPVVAAGRTDTGVHAVGQAIHFDLPNADEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSSMLNARGKIYSYRLFVGQ-IPSPLDRLYRAHASKAAGSPIDVELLYRTIPKFAGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMVFHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIF--RTGVRDSCLIYAAPAHGLTLETVLYDGY 1287
            +  R+  RV+YDGT FNG+Q Q    TV+G L KA + RF    VP++ A RTD+GVHA GQA H DLP    D+  L + +N+M+P+DVR+  +  APP      EK  PW ++  + GK YSYR+        PL+RLYRAH        +D  LL   + +  G  DF  F+N    +  L       E +T R + S E  DEG G+  +   LDGALYRMVRN+VG  +A   G+LK + +DE+   R   RD+    +APA GL LE V YD +
Sbjct:   14 RAARYALRVAYDGTHFNGWQHQPNARTVEGELRKAFTTRFDGANVPLLGASRTDSGVHARGQAAHVDLPEEVADVDLLKHQLNRMLPDDVRINCVREAPPGG----EK--PWHAIACSTGKRYSYRMTARYGSQDPLERLYRAHVCY---EDLDFALLSNALQRCRGRFDFKAFANNAPTQNPL-------EMDTIREIRSIEAEDEGFGDYTVQIELDGALYRMVRNVVGACVACGTGKLKLDELDELLSGRKTRRDNPT-KSAPARGLCLEEVFYDDF 276          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig790.16852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS62_ECTSI1.110e-18569.03tRNA pseudouridine synthase n=2 Tax=Ectocarpus Tax... [more]
R7QN10_CHOCR1.720e-5741.81tRNA pseudouridine synthase n=1 Tax=Chondrus crisp... [more]
F0Y1Q4_AURAN5.230e-5543.42tRNA pseudouridine synthase n=1 Tax=Aureococcus an... [more]
A0A1Z5KP68_FISSO3.650e-5441.10tRNA pseudouridine synthase n=1 Tax=Fistulifera so... [more]
A0A836CB05_9STRA7.820e-5441.55tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
B8CDY0_THAPS9.180e-5441.49tRNA pseudouridine synthase (Fragment) n=1 Tax=Tha... [more]
A0A7S4MSL3_9STRA9.620e-5442.18tRNA pseudouridine synthase n=1 Tax=Odontella auri... [more]
A0A482SL84_9ARCH1.540e-5039.44tRNA pseudouridine synthase A n=1 Tax=archaeon Tax... [more]
L1IVY1_GUITC2.430e-5041.53tRNA pseudouridine synthase n=1 Tax=Guillardia the... [more]
A0A8J2SCD1_9STRA3.060e-5041.43tRNA pseudouridine synthase n=1 Tax=Pelagomonas ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig790contigL-elsbetiae_contig790:5418..10211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score538.9
Seed ortholog evalue2.1e-150
Seed eggNOG ortholog2880.D7FS62
KEGG koko:K06173
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG4393@2759
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Ec32 ortholog descriptionPseudouridine synthase I, TruA, C-terminal
Ec32 orthologEc-01_000690.1
Exons3
Model size1507
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig790.16852.1prot_L-elsbetiae_contig790.16852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig790 5466..9997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.8534167-UTR-L-elsbetiae_contig790:5417..54651622816873.8534167-UTR-L-elsbetiae_contig790:5417..5465Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 5418..5465 +
1691683878.2442768-UTR-L-elsbetiae_contig790:5417..54651691683878.2442768-UTR-L-elsbetiae_contig790:5417..5465Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 5418..5465 +
1622816873.8968692-UTR-L-elsbetiae_contig790:9997..102111622816873.8968692-UTR-L-elsbetiae_contig790:9997..10211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 9998..10211 +
1691683878.2941601-UTR-L-elsbetiae_contig790:9997..102111691683878.2941601-UTR-L-elsbetiae_contig790:9997..10211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig790 9998..10211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.8650823-CDS-L-elsbetiae_contig790:5465..59631622816873.8650823-CDS-L-elsbetiae_contig790:5465..5963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 5466..5963 +
1691683878.2621138-CDS-L-elsbetiae_contig790:5465..59631691683878.2621138-CDS-L-elsbetiae_contig790:5465..5963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 5466..5963 +
1622816873.8748922-CDS-L-elsbetiae_contig790:6202..63761622816873.8748922-CDS-L-elsbetiae_contig790:6202..6376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 6203..6376 +
1691683878.2739613-CDS-L-elsbetiae_contig790:6202..63761691683878.2739613-CDS-L-elsbetiae_contig790:6202..6376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 6203..6376 +
1622816873.8850062-CDS-L-elsbetiae_contig790:9424..99971622816873.8850062-CDS-L-elsbetiae_contig790:9424..9997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 9425..9997 +
1691683878.2841992-CDS-L-elsbetiae_contig790:9424..99971691683878.2841992-CDS-L-elsbetiae_contig790:9424..9997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 9425..9997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig790.16852.1

>prot_L-elsbetiae_contig790.16852.1 ID=prot_L-elsbetiae_contig790.16852.1|Name=mRNA_L-elsbetiae_contig790.16852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=415bp
MLAVASSGGCFLFRGSASALGLFGQVGWLRPLQRQPPAYTSQMLQSWAEG
GAQGSTGIIYTPRHSADAATLQRTLQRPSRLLGTSSAVPPHREVADSGEL
KSPLTPPNNDNALAEARRLARFDEEGEYRVFRELLEGKKTRFVSRVSYDG
TKFNGFQLQNGLPTVQGALEKALSQRFQTYVPVVAAGRTDTGVHAVGQAI
HFDLPNADEDLAQLTYSMNQMMPEDVRVWNMSVAPPSDPWQVEKGWPWSS
MLNARGKIYSYRLFVGQIPSPLDRLYRAHASKAAGSPIDVELLYRTIPKF
AGEHDFAGFSNEVDRRATLKKKDGLGEFNTRRTVYSAEIIDEGEGNIKMV
FHLDGALYRMVRNMVGTLLAVAAGRLKPEIVDEIFRTGVRDSCLIYAAPA
HGLTLETVLYDGYS*
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mRNA from alignment at L-elsbetiae_contig790:5418..10211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig790.16852.1 ID=mRNA_L-elsbetiae_contig790.16852.1|Name=mRNA_L-elsbetiae_contig790.16852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4794bp|location=Sequence derived from alignment at L-elsbetiae_contig790:5418..10211+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGTTGCTCTATCTCTGCCTCTCTCTCTGCCTGTTTCACACTCAAAAAT GCTGGCGGTGGCCAGCAGTGGTGGCTGCTTCTTGTTCAGAGGTTCCGCAA GCGCCCTCGGCCTCTTTGGTCAAGTTGGATGGCTTCGCCCGCTACAACGA CAGCCGCCTGCATATACGTCACAGATGTTGCAAAGTTGGGCTGAAGGCGG TGCACAAGGCTCCACCGGAATTATATACACTCCACGCCACTCTGCCGACG CTGCCACTCTGCAGCGCACGTTGCAACGGCCGTCGAGGTTGTTGGGAACA TCATCTGCGGTTCCGCCGCACCGAGAGGTAGCAGACAGCGGCGAATTGAA GTCGCCGTTGACACCACCCAACAACGACAACGCACTGGCGGAGGCCAGAA GATTGGCACGTTTTGACGAGGAGGGGGAGTACCGTGTGTTCAGAGAGCTG CTGGAGGGGAAGAAAACACGGTTTGTGTCTCGAGTCAGCTACGATGGCAC AAAATTTAACGGGTTTCAGCTGCAGAACGGGCTCCCGACGGTGCAGGTGA GGCAGTAGAAACGGCAGGAGAGCAGACACAAAAGTACCTCACTTCACCTG ATGCAGCAGCCACGAAGTTGCTAACGTGCTCTTCACCCAAGTTGTGTCGA AAATAAGGTGTCCGCGAGTGTGTACATGTAGCACAGCCATTTCCGGCCCT CGCCCCCGTCTGCACATGTGCAACCTGTACATATGTCGACTAACCTATTT TCGCACTTCGCCAACACGCCTGCGCGTCGCGGCAGGGAGCGCTGGAGAAG GCCTTGTCGCAGCGATTCCAGACGTACGTGCCGGTTGTGGCCGCTGGGAG GACCGACACCGGCGTGCATGCAGTGGGGCAGGCGATTCACTTTGACCTTC CCAACGCCGACGAAGATCTAGCCCAGCTTACCTACTCGATGAACCAGATG ATGCCTGAGGTGAGACAGCTTTTTGTGTCTGTCGCTCGGAGAAATGTTTG ATCGAGCTGCACCTCTTGAGTCGTATTTCCACAATATCCCCTTTTCAGAA CCATAACATCTTCATCAATTAAGGAGTGAAACCAAGTGAAATATACCAAA ACAATCAGAACGCGTGTGAACATTAAGGCTGCAGGAAGGGGTACCCATTG ATCAGCCCATTGATCAGTATAGGCCTTGCTCGAAGAATAATCGCATACCC CCGCTGAACATCACAGAGCCTCATTGGAAGTTTATGTGGGCTTTCCAAAA ATGCCCGCATGTTTTCACAGTCCGGCCAAAAAACAGAGAGATGTTCCGAG GTTCTCGGCTCTTTTTGTCGTGTTTGCGGAGAGTTTTTTAACCACCCCTT GCGCGTGTGAACTGGGAAAGTATGCCAATGTAGCTGCTGTGTGTGTGTGT GTCCTTGCCATTTATTTTGGCGACAGTCCCCCCCAGTGGAGACGTGTACT ACACCTTGCGGTGTACTTAGAGGTACTACACTTTGCAGTGTATTTGTCTA TACAACTAGAACCAACCGGGGTCACACAGGAGGGGGTGAACACTGGGGCT TTTTCTTCTTTTTTATTTTATATTTTTTGCCCAACCTTCCTCCTGCGGTT CTCGCCTTGGGTTTTAACGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGT CGACGTGATTACGTCGAAGTTTGGTAACTCTCGAGCTTTTCAGCTTTTAT CGATTTCACCTGCAAAGTCGCACAACCCATTAGAAATTCCACACCCTTTC AAAACATCCGGGCTACATTCGCGTCAAGTCCGTTTTTTGATCGGTGCGAA AATCACGGTGTTAGGCTCCGGGGTCCAGTTTTAAGTATCCACCCGATTCA CCGCAAAAAAGACTGTCGGCAAATAGAGGTCGTGTCCACCAGCACATCGA AAGCGTGGCTTATAGCTATCTGTTGCTGCTACCAAGGACATGCGAGCGGC CCCTACACACCATATCAGTAGGCACTCCCAGCATCTTCCGCCGTTCTTGC CTGCGAGGGGCGAGCTATCTGATCTCTTGAACACCAAGTAGCAGTGCGGT CTGCCTTTGACAGTCCTGTGGAATCGGTGATTTTTATATCTTTGGAGAGG AAATTCTCCGCCATCAAGACAGCTAGAAATTAATGGCAGATTTTTAATCT GTAGAGAACTGCGAACTGTGGCGTTGGAGTGTCCCATTTCGTATAGCAGC GGGATGCTAAGGGTCGGACTGGAAAGAGTGCTTTTGGGAGGGTCCGTGCA GTCGGTTTTCGCATACCCCAAAGAGTGTGCATTCAAAAAATCAATCAAAC CGTGCTCGTCACTGAGCCCCTGGATCAAAGTACACTGTGCCCCCCCCCCT ACCCGCCGCCTAGGCCCAGCCTTCTTAGACGCGTCTAAGTATTCGTCTTA CTCCCTTTCTCACAGAACGATCTGTCTAACTCCTTGTATGGTGACTAAGC ACGTCTTGCAATTGTCTTAGACTGTCAGAGATCCCCAGTCATGGCATCTG AAGGAACTATTTGTGAGTTACCGAGACTTAAAAGGCTGCGCCTACCGCCG CCTTAACCCTTCTGTGGCTACTAGGCTTTTGGGCTTAAAAAATGAGCAAT TGGGCATATTTGTTTTGAAACGCCCGGTCTATTGGAGGCAGGGTTGACCT GCAAAAAAAAACAGACCAACATACACGGAGTTGTATAGCACGCTCAGCGC TACTCTGCGCGCCACCGCGCGCACGCACGCGCGCGCGATGATCCCGGCAT GGTAGATTCCGCAAAGACCGGGGTGCTCGGCAGCGGCCTTTTTCCTCTTG GCAAGACTCATCTCTCCGAGAGGTTGAGGTTCGTCCGCATGAGGGCAGTA GTGGCGCCCAACTTGAGATGCAACCTCGAACGCAAGAGCGCGTCCGAGAT CTCCGTTTAGTTCACCGTCGGCTGGTAGCTGCTTGAGGAATGCAACCAGT TGCTGATGACAGGCTCATTGGTTACCAGCCACGTACCCCGCAACGTCTAC TTCGGGTAGGATAATCGACATGGTTGTGTGTGTCCTCCTCCTTGTACCAA GCCTCCAGCAGCAGTACAGGGAGTTCCCAGTTGCCTCACAGCCGAGGGGC TCGGGAGAAGTGCAGAAGTGCATATAAGCCAAATATCCTTCACCGCATAA AAAATGGGCATTTGAATTGGGCATTTTGGTGTGATTGGGAAATAGAGGGG TGTGCCGTGGTCCGGATCGAGAAAACACAGGAAAGCGAGAGCTTGCGGTG AAACAATTTAGGCCGATTAACCCTTCGACATGTCTAACTAACGTCCCTAG CCTGTCGCGGCCCCGCGCCATGACGCCTGTGGGAATATAGCTCCAGGGAG GAAACTCTACACACCAACAAAAAAAGTGCATGTTCCGTGTGCGCCCCCTT GATATGCGGCGGGATATAGTGTGCGCGCGCGGGCTAGTCGAGCCGGTGGG CTCCACCAGTCTATCCACCAGCCTAGGGACAGAAGGGTTAATGTGTCGTG TCATGCTCTGTGACGACGGTGACCGATGATGCAACCCCGAATGCCGACAT CATGAGGGTGGTTTTACGACTCGCCGGTTCTCCGTCGACTTATCGTAGCT GGCATTGGCTCCGAAGACCGGCGACACGCGCCACCGCCTGAAGGTTTCGT CTCAGCAGAAAATCTGCGCCCTTCCCACCGGGACTCTGGACAGCTCGAAC GCTTATTCTCACCAAACAAATCTTGCTGCCGATAGAAAAAAAGGACCAAG TGCGTGTGCCAAGAGTCAGGGTCTCACATCTCCGCGATTTGGATAGCGTT TTTGGCGAAGTATTACCAGTGTTGGGTACCCAAAGGGGCTTCTCTCTCGG TGTTGCCTTGCGAAAAAAACAGAAGCGTGACCACACTATGTATCTCCCCA CCTCTGGCCGCGAGAACCTAGCAGTCCTTTTTTCGCCGGACAATCTAGCA GTCCAACAAACCTGGTCTCTGTGTACCCTCCTCTTATTTGTAACAATTTC CGTCCAGGACGTCCGTGTGTGGAACATGTCGGTCGCGCCGCCGAGCGATC CGTGGCAAGTGGAGAAAGGCTGGCCCTGGTCTTCCATGCTCAATGCCCGC GGCAAGATCTACAGCTACCGTCTGTTCGTGGGCCAAATCCCGAGCCCGCT GGATCGGTTATACAGGGCACACGCCAGCAAAGCTGCGGGGTCGCCCATCG ATGTCGAGCTTTTGTACAGGACGATACCAAAGTTTGCCGGGGAGCACGAC TTCGCCGGGTTTTCGAACGAGGTTGACAGGCGGGCGACGCTGAAAAAGAA AGATGGCCTTGGGGAATTCAACACCCGAAGAACGGTCTACTCGGCGGAGA TCATTGACGAAGGGGAGGGCAACATAAAAATGGTGTTCCATTTGGATGGT GCTCTGTATAGGATGGTCAGGAACATGGTGGGGACGCTGCTGGCCGTGGC TGCCGGTCGGTTAAAGCCCGAGATTGTCGATGAGATTTTCAGAACGGGTG TGAGGGACTCATGCTTGATATACGCCGCACCAGCGCACGGCCTGACGTTG GAAACAGTGCTGTACGATGGCTACAGTTGATGGATGCCTTCTACAGCATT CATTTGTCGCGCGAAGGACCACCGATTGTCGCATGGGTGTTATACTTACT GGACATCCGTGTCGGCCTGAGACATAATATGTAGTAACATAATGCCGCAA TCGTTCCGTCTTCAGTATACTGCTGTTGCATGAGTTCCTTCGATATTGGG AACAAGTGCTTTCGAGATCGATGGCAACTTCCACCAGAGAGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig790:5418..10211+

>mRNA_L-elsbetiae_contig790.16852.1 ID=mRNA_L-elsbetiae_contig790.16852.1|Name=mRNA_L-elsbetiae_contig790.16852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2490bp|location=Sequence derived from alignment at L-elsbetiae_contig790:5418..10211+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCGGTGGCCAGCAGTGGTGGCTGCTTCTTGTTCAGAGGTTCCGC
AAGCGCCCTCGGCCTCTTTGGTCAAGTTGGATGGCTTCGCCCGCTACAAC
GACAGCCGCCTGCATATACGTCACAGATGTTGCAAAGTTGGGCTGAAGGC
GGTGCACAAGGCTCCACCGGAATTATATACACTCCACGCCACTCTGCCGA
CGCTGCCACTCTGCAGCGCACGTTGCAACGGCCGTCGAGGTTGTTGGGAA
CATCATCTGCGGTTCCGCCGCACCGAGAGGTAGCAGACAGCGGCGAATTG
AAGTCGCCGTTGACACCACCCAACAACGACAACGCACTGGCGGAGGCCAG
AAGATTGGCACGTTTTGACGAGGAGGGGGAGTACCGTGTGTTCAGAGAGC
TGCTGGAGGGGAAGAAAACACGGTTTGTGTCTCGAGTCAGCTACGATGGC
ACAAAATTTAACGGGTTTCAGCTGCAGAACGGGCTCCCGACGGTGCAGAT
GCTGGCGGTGGCCAGCAGTGGTGGCTGCTTCTTGTTCAGAGGTTCCGCAA
GCGCCCTCGGCCTCTTTGGTCAAGTTGGATGGCTTCGCCCGCTACAACGA
CAGCCGCCTGCATATACGTCACAGATGTTGCAAAGTTGGGCTGAAGGCGG
TGCACAAGGCTCCACCGGAATTATATACACTCCACGCCACTCTGCCGACG
CTGCCACTCTGCAGCGCACGTTGCAACGGCCGTCGAGGTTGTTGGGAACA
TCATCTGCGGTTCCGCCGCACCGAGAGGTAGCAGACAGCGGCGAATTGAA
GTCGCCGTTGACACCACCCAACAACGACAACGCACTGGCGGAGGCCAGAA
GATTGGCACGTTTTGACGAGGAGGGGGAGTACCGTGTGTTCAGAGAGCTG
CTGGAGGGGAAGAAAACACGGTTTGTGTCTCGAGTCAGCTACGATGGCAC
AAAATTTAACGGGTTTCAGCTGCAGAACGGGCTCCCGACGGTGCAGGGAG
CGCTGGAGAAGGCCTTGTCGCAGCGATTCCAGACGTACGTGCCGGTTGTG
GCCGCTGGGAGGACCGACACCGGCGTGCATGCAGTGGGGCAGGCGATTCA
CTTTGACCTTCCCAACGCCGACGAAGATCTAGCCCAGCTTACCTACTCGA
TGAACCAGATGATGCCTGAGGGAGCGCTGGAGAAGGCCTTGTCGCAGCGA
TTCCAGACGTACGTGCCGGTTGTGGCCGCTGGGAGGACCGACACCGGCGT
GCATGCAGTGGGGCAGGCGATTCACTTTGACCTTCCCAACGCCGACGAAG
ATCTAGCCCAGCTTACCTACTCGATGAACCAGATGATGCCTGAGGACGTC
CGTGTGTGGAACATGTCGGTCGCGCCGCCGAGCGATCCGTGGCAAGTGGA
GAAAGGCTGGCCCTGGTCTTCCATGCTCAATGCCCGCGGCAAGATCTACA
GCTACCGTCTGTTCGTGGGCCAAATCCCGAGCCCGCTGGATCGGTTATAC
AGGGCACACGCCAGCAAAGCTGCGGGGTCGCCCATCGATGTCGAGCTTTT
GTACAGGACGATACCAAAGTTTGCCGGGGAGCACGACTTCGCCGGGTTTT
CGAACGAGGTTGACAGGCGGGCGACGCTGAAAAAGAAAGATGGCCTTGGG
GAATTCAACACCCGAAGAACGGTCTACTCGGCGGAGATCATTGACGAAGG
GGAGGGCAACATAAAAATGGTGTTCCATTTGGATGGTGCTCTGTATAGGA
TGGTCAGGAACATGGTGGGGACGCTGCTGGCCGTGGCTGCCGGTCGGTTA
AAGCCCGAGATTGTCGATGAGATTTTCAGAACGGGTGTGAGGGACTCATG
CTTGATATACGCCGCACCAGCGCACGGCCTGACGTTGGAAACAGTGCTGT
ACGATGGCTACAGTTGAGACGTCCGTGTGTGGAACATGTCGGTCGCGCCG
CCGAGCGATCCGTGGCAAGTGGAGAAAGGCTGGCCCTGGTCTTCCATGCT
CAATGCCCGCGGCAAGATCTACAGCTACCGTCTGTTCGTGGGCCAAATCC
CGAGCCCGCTGGATCGGTTATACAGGGCACACGCCAGCAAAGCTGCGGGG
TCGCCCATCGATGTCGAGCTTTTGTACAGGACGATACCAAAGTTTGCCGG
GGAGCACGACTTCGCCGGGTTTTCGAACGAGGTTGACAGGCGGGCGACGC
TGAAAAAGAAAGATGGCCTTGGGGAATTCAACACCCGAAGAACGGTCTAC
TCGGCGGAGATCATTGACGAAGGGGAGGGCAACATAAAAATGGTGTTCCA
TTTGGATGGTGCTCTGTATAGGATGGTCAGGAACATGGTGGGGACGCTGC
TGGCCGTGGCTGCCGGTCGGTTAAAGCCCGAGATTGTCGATGAGATTTTC
AGAACGGGTGTGAGGGACTCATGCTTGATATACGCCGCACCAGCGCACGG
CCTGACGTTGGAAACAGTGCTGTACGATGGCTACAGTTGA
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