mRNA_L-elsbetiae_contig790.16851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig790.16851.1
Unique NamemRNA_L-elsbetiae_contig790.16851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: D7FS61_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS61_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 1.540e-98
Identity = 156/196 (79.59%), Postives = 172/196 (87.76%), Query Frame = 1 
Query:    1 MLEAVGLEGEDEELEI---YEQPPPGPSLGERHAVDDKAISNLTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKLRTPLLEQ 579
            +L +VG+ GE EE      Y+QPPPGPSLGERH   D     LT+EQK EAARCLR +T+FKFCSDESI +V+++M RE FSEGEVLLEQGDPQ+RVFLITQGSVSRLRYLNEQLHQVETVGGE+HRGMFGALHVLREEPTYATALTETDGVA+TL+S +LNKLIEADP IAKEMLYSLSKEVFRMSKLRTPLLEQ
Sbjct:   21 VLGSVGVGGEVEEXXXXVYYDQPPPGPSLGERHQAHDSRRP-LTAEQKAEAARCLRSSTLFKFCSDESIAKVIENMTREPFSEGEVLLEQGDPQTRVFLITQGSVSRLRYLNEQLHQVETVGGENHRGMFGALHVLREEPTYATALTETDGVAFTLESVELNKLIEADPSIAKEMLYSLSKEVFRMSKLRTPLLEQ 215
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A835Z8B9_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.990e-62
Identity = 106/165 (64.24%), Postives = 131/165 (79.39%), Query Frame = 1 
Query:   85 RHAVDDKAISNLTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKLRTPLLEQ 579
            RH  +   +S   +E   E    LR   +F+ CS+ ++ R+   M+R EF  GEVLLEQG+PQSRV++IT+GSV+RLR++++QLHQVETVG ++ RGMFGALHVLREEPTYATA+TETDGVAYTLDS  LNKL++ DP + KEMLYSLSKEVFRMSKLRTPLLEQ
Sbjct:   41 RHLEEGVRVS---AEHMPELLESLRTARIFQHCSEANLRRIASEMKRMEFKAGEVLLEQGEPQSRVYMITEGSVARLRFVDDQLHQVETVGSDARRGMFGALHVLREEPTYATAVTETDGVAYTLDSKVLNKLLDTDPNLGKEMLYSLSKEVFRMSKLRTPLLEQ 202
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A7S3XLB7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLB7_HETAK)

HSP 1 Score: 166 bits (420), Expect = 4.290e-46
Identity = 82/158 (51.90%), Postives = 115/158 (72.78%), Query Frame = 1 
Query:  103 KAISNLTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKLRTPLLE 576
            K  S LTS++ ++    +R  ++FK  S++++ +V   M R EF +G+VLL+QGDPQ R+++I +GSV+RLRY   Q H VET+G   + G FG+LH LR EPTYA+ALTETDGVAYTL++ +LN  ++ D  +AKE+++SLSKEVF    LRTPLLE
Sbjct:   20 KGHSPLTSDETEQCVTSMRSASLFKHASEDTLRKVAKKMGRLEFKKGDVLLDQGDPQERLYIIAEGSVTRLRYEANQYHHVETIGDTHNGGAFGSLHALRMEPTYASALTETDGVAYTLEAEELNAFLDHDRAVAKEIIFSLSKEVFSYRSLRTPLLE 177
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A8J5XKE0_DIALT (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKE0_DIALT)

HSP 1 Score: 127 bits (319), Expect = 2.730e-31
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:  100 DKAISNLTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKL-RTPLLEQ 579
            D+    L++    EA   LR +TMF    D ++ RV   M R E+ +G++L+ QGDPQ  ++++T+GSV R+RY   + H  E++G    R   GALH+L  +PTYATA   TD VAY L+S  L++L E    I+K+++Y+LS E+ R S L RTPLL+Q
Sbjct:   21 DELSPRLSATDMGEAIDGLRSSTMFAQLDDHNMRRVASRMERVEYKKGDILMHQGDPQRSMYIVTRGSVKRVRYEAGRQHSTESLGAAGSRNTIGALHLLYNQPTYATARCSTDVVAYRLNSDDLDELFENSQSISKQVVYALSLEIKRQSSLLRTPLLDQ 181
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A7R9URD3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9URD3_DIALT)

HSP 1 Score: 125 bits (313), Expect = 4.320e-31
Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:  139 EAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKL-RTPLLEQ 579
            EA   LR +TMF    D ++ RV   M R E+ +G++L+ QGDPQ  ++++T+GSV R+RY   + H  E++G    R   GALH+L  +PTYATA   TD VAY L+S  L++L E    I+K+++Y+LS E+ R S L RTPLL+Q
Sbjct:    4 EAIDGLRSSTMFAQLDDHNMRRVASRMERVEYKKGDILMHQGDPQRSMYIVTRGSVKRVRYEAGRQHSTESLGAAGSRNTIGALHLLYNQPTYATARCSTDVVAYRLNSDDLDELFENSQSISKQVVYALSLEIKRQSSLLRTPLLDQ 151
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A2R5GIZ5_9STRA (cAMP-dependent protein kinase type I-alpha regulatory subunit n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIZ5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.260e-27
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 1 
Query:  154 LRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKL-RTPLLEQ 579
            LR +TMF++CS++S   + + M  E FS+G+VL+ QG+PQ+   +I  G+V+RLR +++QLHQ+ T+G        G LHV+REE  ++T    TDG  + L S    +L+E  P  A+E ++SL KEV   +KL RTPL  Q
Sbjct:   89 LRRSTMFRYCSEQSRLSLANSMELETFSKGDVLMIQGEPQTSAIIIVDGTVARLRLIDDQLHQMATLGSSGSSATIGMLHVIREEKAFSTVRALTDGACFRLSSEVFRELLEESPEFAQECVFSLCKEVRAHTKLKRTPLFLQ 231
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A7S4MTX4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MTX4_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 4.010e-26
Identity = 62/157 (39.49%), Postives = 98/157 (62.42%), Query Frame = 1 
Query:  112 SNLTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSK-LRTPLLEQ 579
            S L++    EA   LR +TMFK  SDE++ R+   MRR + ++GEV+  QGDP + +F++T+G+V+R+R L E+ H+ E +G +      GALH++R EP YAT    T+   Y L S +L++L++  P  A E++++L+ +V      LRT LL Q
Sbjct:   51 SKLSARSTHEAIDGLRKSTMFKHASDENLARIASKMRRVDLNKGEVIYYQGDPTTEMFIVTRGAVTRMR-LEEREHEHENLGSKGSEATIGALHLVRNEPYYATVRCTTNVTCYALSSVELHELLKESPSFAGEVIHALAADVLAQQVILRTALLSQ 206
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A7S0QR06_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR06_9CRYP)

HSP 1 Score: 106 bits (264), Expect = 1.380e-23
Identity = 63/158 (39.87%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:  154 LRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGMFG-------ALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSK-----LRTPLLEQVSRK 591
            L+ ++MF  C DE++ +VV  M R EF +G++L++QGDPQ R F I +G + R R +N++ HQV    G +    +G       ALHVL++EP++A A   ++G  YT+ S  L K ++ D   A ++++SLS EV R S      +RTPLLEQ  +K
Sbjct:    1 LKQSSMFHACHDEALRKVVKDMDRIEFQKGDILMKQGDPQDRAFFIAEGQIRRERLVNDRSHQVVDTFGNTDPDQYGNRKIAIGALHVLKQEPSFAHAKCMSNGYLYTMPSDVLQKHLQ-DASFATQVVHSLSVEVRRQSNHVRWLMRTPLLEQRPKK 157
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A485KMG1_9STRA (Aste57867_9213 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMG1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.030e-21
Identity = 61/156 (39.10%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  118 LTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGM-FGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFR-MSKLRTPLLEQ 579
            L+ EQ ++  +      MF F ++ ++ ++  H   E F +G VL  QG PQ+++ +++ G V   + +N Q H      GE+ +GM  G+ HVLR++P  AT+   T   AYTLDS  +NK++ ADP IA +++YSL++EV R M+ L+TPLLEQ
Sbjct:    3 LSREQHKDCVQKFSTVGMFSFVNESALHKLCAHAVPEHFGKGNVLFNQGAPQTKLVVVSSGVVQETKDINGQNHS----WGETVQGMALGSNHVLRQDPAAATSKCMTPVFAYTLDSPSINKVL-ADPEIATDVMYSLNREVRRHMNLLQTPLLEQ 153
[Close]
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Match: A0A6G0X190_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X190_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.030e-21
Identity = 57/156 (36.54%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:  118 LTSEQKQEAARCLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQGSVSRLRYLNEQLHQVETVGGESHRGM-FGALHVLREEPTYATALTETDGVAYTLDSGKLNKLIEADPLIAKEMLYSLSKEVFR-MSKLRTPLLEQ 579
            L+ EQ+Q+  + +    MF +C++ ++ ++  +   E+++ G V+  QG PQ+++ +++ G++S  + +  Q+H      GE+  GM  G+ HVLR++P  AT+   T   AY+LDS  L K++ ADP IA +++YSL++EV R M+ L+TPLLEQ
Sbjct:    3 LSREQEQDCLQKMASVPMFAYCNESALRKLCSNASPEKYARGVVIYPQGAPQTKLLVVSSGTISETKDIQGQIHS----WGETSAGMALGSNHVLRQDPAAATSKCVTPVTAYSLDSRTLAKML-ADPEIAPDVMYSLNREVRRHMNLLQTPLLEQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig790.16851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FS61_ECTSI1.540e-9879.59Cyclic nucleotide-binding domain-containing protei... [more]
A0A835Z8B9_9STRA1.990e-6264.24Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XLB7_HETAK4.290e-4651.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5XKE0_DIALT2.730e-3142.86Cyclic nucleotide-binding domain-containing protei... [more]
A0A7R9URD3_DIALT4.320e-3145.27Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A2R5GIZ5_9STRA8.260e-2742.66cAMP-dependent protein kinase type I-alpha regulat... [more]
A0A7S4MTX4_9EUKA4.010e-2639.49Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0QR06_9CRYP1.380e-2339.87Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A485KMG1_9STRA7.030e-2139.10Aste57867_9213 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X190_9STRA7.030e-2136.54Cyclic nucleotide-binding domain-containing protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig790contigL-elsbetiae_contig790:235..5226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue3.9e-78
Seed eggNOG ortholog2880.D7FS61
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs28KCE@1,2QSTD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size597
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig790.16851.1prot_L-elsbetiae_contig790.16851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig790 235..5226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816873.7805471-CDS-L-elsbetiae_contig790:234..3721622816873.7805471-CDS-L-elsbetiae_contig790:234..372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 235..372 -
1691683878.1920443-CDS-L-elsbetiae_contig790:234..3721691683878.1920443-CDS-L-elsbetiae_contig790:234..372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 235..372 -
1622816873.7939498-CDS-L-elsbetiae_contig790:1094..11821622816873.7939498-CDS-L-elsbetiae_contig790:1094..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 1095..1182 -
1691683878.205792-CDS-L-elsbetiae_contig790:1094..11821691683878.205792-CDS-L-elsbetiae_contig790:1094..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 1095..1182 -
1622816873.8085787-CDS-L-elsbetiae_contig790:3827..39521622816873.8085787-CDS-L-elsbetiae_contig790:3827..3952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 3828..3952 -
1691683878.2201385-CDS-L-elsbetiae_contig790:3827..39521691683878.2201385-CDS-L-elsbetiae_contig790:3827..3952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 3828..3952 -
1622816873.8198404-CDS-L-elsbetiae_contig790:4980..52261622816873.8198404-CDS-L-elsbetiae_contig790:4980..5226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 4981..5226 -
1691683878.2318552-CDS-L-elsbetiae_contig790:4980..52261691683878.2318552-CDS-L-elsbetiae_contig790:4980..5226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig790 4981..5226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig790.16851.1

>prot_L-elsbetiae_contig790.16851.1 ID=prot_L-elsbetiae_contig790.16851.1|Name=mRNA_L-elsbetiae_contig790.16851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MLEAVGLEGEDEELEIYEQPPPGPSLGERHAVDDKAISNLTSEQKQEAAR
CLRLTTMFKFCSDESITRVVDHMRREEFSEGEVLLEQGDPQSRVFLITQG
SVSRLRYLNEQLHQVETVGGESHRGMFGALHVLREEPTYATALTETDGVA
YTLDSGKLNKLIEADPLIAKEMLYSLSKEVFRMSKLRTPLLEQVSRKR*
back to top

mRNA from alignment at L-elsbetiae_contig790:235..5226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig790.16851.1 ID=mRNA_L-elsbetiae_contig790.16851.1|Name=mRNA_L-elsbetiae_contig790.16851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4992bp|location=Sequence derived from alignment at L-elsbetiae_contig790:235..5226- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGAGGCGGTAGGACTGGAAGGAGAAGACGAGGAGCTCGAGATCTA
TGAACAACCCCCACCCGGCCCCAGTCTTGGCGAGAGGCACGCGGTGGATG
ACAAGGCTATCAGCAACCTTACAAGCGAGCAAAAGCAGGAGGCTGCTAGG
TGCCTGCGACTGACCACCATGTTCAAGTTCTGCTCGGACGAGAGCATCAC
GAGGGTTGTGGATCACATGAGACGTGAAGAGTTCTCGGAGGGCGAGGTAG
GTTTGCATGATTCAAATATCTGCACCGGATGCAATTTGATGTTTTTTTTA
AATCGAAGTTTTTTTTTAAGCTGCTCTACATACACACAGCGGCAGCTGCT
CTATCGCAGGACTGACTGGTCGTTGGGATTCCGCTTCCCTCGTGACACAA
TGACCTTTCTTGGCAGTTGGCTGTGTCTTCCCTCCATATGAAGCAGTCCG
TGGCGCCTTCATCACCGTAGTTTGCTGAGGGGAAGCGCTTTTGGTTTTAC
ATGCGTGCGCTCCGATCGTCACCCCCCCCCCCCAAGCGGCATTGAACAGC
AACCTCCAAACAGCTTTAGGCTGCAGCTCCGGAAATGAAATTTAACGGCT
GCTGCGTGTTGAGGCACGTCTTTTCCAGGATCTTGGGTCAATGTGAGGTC
GTTGGCAGCAAGAGGGGATGGTGCGCACCTCCTTCCTGTATAGGGGTGTG
CACGTCGCAATCCAGCTGATGATCCCCGACCAGATGGATGCGGCCCCTTT
TTCTCTCCTTTATTTGTGTAAACGACCTCAACCACACGCTGCATACATAC
ATAATAACACAGCCACGCGGCTGCGAGAGAAACTCCAGCCCCGCGTGTGA
CCGGAACGTGCGAAGTGCTGTAACGTGGAACTTGCTCAATCGGTGACCGC
CCGCTTTACTTTATTCGGTGAACTGCGGAGACTTGGAAAATTGTTGCCAG
ATGACACACACGAAGAAGAAGATTTTTCATTAAACTTTGTAGCCTCTCCC
CAAACGACCATGGGCTCGTGGTCCAGGAGTAGTAGAGTGTGCCTTTCCTG
CCCTGGGAAAAAAGTGAAACCTGCAGCCCATTAGGCTCGGAGTTCCTGCA
AGCATATAAATCCGATTTTTACAGCAGTGGACCCAGATATGACTGAACCA
CGCTTATATCTATCCCACCAAAAAAAAAAACGGTACATACAATATTTACA
TCTCGACGCATTGCCCACCACCGCCGTCGCGCGACGTGTTTGCTTTGTTC
TCTTCTGCTGCCTCGTCGCGAAAGGTTCTTCTGGAGCAGGGAGACCCGCA
GTCCCGAGTGTTTCTCATAACGCAGGGCTCTGTGTCGCGGCTGCGGTACC
TGAACGAGCAACTTCACCAGGTCGAGACCGTCGGCGGCGAGAGTCACAGG
TATGACACACACCCGTGTGTACTCGCTTTCACAAGTGTGCAGTGCAGTAG
GTGGTGGGACGCTGTGGAAGAGAACATCTCTTGGTTTTCTTGCGTGCGCG
GAATATTGTAAACCTGTCTGCATACAGATGTAAGTTTAGTGACGAAGGTA
CACACATACATTTGTAAAAAATGACTCGCTTTTTCACAACCAAAAGACTT
CGTTGATAATGAATCTACGATTCGTTTCAAACGATCAATGATCGGCCAAG
CGCAGAGAAACATTTGCCCTGCTTTTCTCCCCGTATGATACTGCTGTGTG
CCTCCTTATGTAACTCCGAACTGCTTCCGTGAGAAGTACGTCCGTATGAC
ACAAACGCACACTTCATTTTTTACTTTTCACATTGCCTGCAATAGGGAGT
TACGTATATCTTCTAGATATACTTCGAAGTACGTGTAATGCTAGTTACAA
TATACCGTAATCATACGGGTTATCGCACCCCCGTGTTAGCGTTTCTCTAT
AGCGTACTTCTCCACAACCAGGAGGGTACCACTGCCGAAAAGGGTTGTTT
TCAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCA
CCCTCCTGGTTGTGGAAGAAACACGCTGCAGAAAAACGCCCAACACGGGG
GTGCGATAACCCGCATGATTATGGCAAGTACAGGGAGAAAAAATAAAATA
AAAAAGAAGAAAAAGCCCCAGTGTTCACCCCCTCCTGTGTGATCCCGGTT
GGTTCTAGTTGTACAGACAAATGCACTGCAAAGTGCAGTACCTCTGAGTA
CACCGCAAGGTGTAGTACACGTCTCCACTTCGGGGGACTGTCGCCAAAAT
AAATGGCAAGGACACACACACACACAGGGAGTGAAGTTTTCCTCCGGGGG
TCTACTCTCACAAGAATTCGACCTTCGGGCAAATACGTCGCCGCAAACCG
CTCGCAATAAATACCAAAAGACGGTGGTTGGTGCCTCGGACGCTGAAGTA
CGGACTTACTGATCAGAAGATCCGAAAAGGATACACGCAGATCCACCGGG
CAAGGGTGCACAAGGCCAAGGAAGTACACACCTATTGTGTGCATACAATA
GGTAAAAAAACACATATCCTACTGAACCACGCGTCCACGAATATCCATTC
GACTACAAAACTACGTTTCCCCCCCGTTCACTATTAACCAGTGCACGGTT
GCCGGCTGCAGCCAAATGACTGTCTGTAGTGCTGCCTGTACAAAAATACA
CGGGTCGTGATGAACATCGAAGAGGAACGCAATTGCTGTCTGTAGTTCTG
TCAGAGTGACAACCCGCCGATACGTGGTGAAAAAGAACAAAGCCAACCAA
AAGCCACCAAGCAATCGACAGTTACCAGAGTCTATCCAAGTCCGTGGTAC
ATGTGGCACGGCATCGATTCTGCAGGCAAGAACAAATTGCCCCAAGACCG
GCCAGAAAATAACGGCATTTTTCGCTGCCACGACGCTGATGACTTGAATC
GTTGCTGCTGTTCGAGTTCTTGGCTGTATCTCGACGAGTGGCGGGCGTGC
GCTTTGCCTGTTCTTCCTTTGCTGCTTTGAAACTTACTCTGAACTTTGCC
CCCGGGAGGAAAAGCGCGAAAAGGCAGAAACATTCCGGTGTTTTCGCGTG
CGTATGTAACTGTCAGCGTTGTACCTGTCGGTGACAGCTGCCTTGACAGG
CCGGCCAGCTTTTTGACAGCCTTGACGCAGTTCCATGTCTAAAGGTTGGT
TCTTACGCGCACACATTTTGTCAAACATAACTTCATTTTGAAGCTATCTG
TGTACTTGGTGCGTTCGGGTTCGGGCTCGGGTCCAGCTACGTACGCACTC
GCCTACCATTTTTCAGGTTAAGACAAAGCGTCGTGTCCAGTAGTTTCCGG
CGTAAGTGTTACATAGTGTTCCCTCGTGGGATGCATTACAAATTGTGCAG
CTGTAAAAATATCGGATATGCACTACAAACCACACACCTAATTTACCCTA
AAACCATCGCGGCGGCGTCGTCGATCGCTCCACCTAAAACCATCATATCT
ACATGCTGAAGTACAATCATTCCTGGGTAGCAGCAATGCGCTCGGCAGTA
AGCTTGATTTCGTTTCGGGGTTCCGACGCGAACGTGTAAAATGCGTTCTG
CCAGCTTGTGCGCCTACCTGACCCCCATTACCACGCAAACACGATGGGGT
GCAAACAGCCTCGAATTATGAATCCAATTGCTACCAAACTGGCCTACAAT
ATAAGTCCGGAATCGCAGGAGGCAAGGGATATACTACGACTGTGGCTCCT
TTCGATTGGAGGGGCACGGTTGACAGATGGGTCCTATCCTCACCGAATCC
CCCGTACTTGAATCAGTAGTTCCACTGCTGTAGGAAGTCAAAGGCTAAAC
TGGGTTGTAACCCAGATGTAAAACACAGTGGATTGGGGCGGGGGGTGAGG
GGCGTAGGGTTCAAAATTAAACACATGGTGCTCCTCCCTCGTGCACGTGA
GCGAATCGCTTTTTTCTCATTCTGTTTACCTTAACGTCAACAACCCCTTT
CCGTGCACCCGCCAGATTGAATTGCAGCCACCTCTTCTCTTCACTCTCCA
CTACCTCCCCCCTCCGTTTGATGTGTTTTACATCCATGTGACAGAGGGAT
GTTCGGAGCTCTGCACGTGCTCAGGGAAGAGCCCACGTATGCAACAGCAC
TCACCGAGACCGATGGCGTGGCCTACACCCTGGTGAGCCAGCCTACCGTT
GGTGACGCCAGATACCACACCCCCGGGACAGATTTTCAGAACCCGATTCC
TCCCCAGTAAGAGAGTGTCATTGCCAAAAGAGGTGGCATTGGAAAGATCT
AGTCGAGGGCTGTCCGAAAGTGTGTCGTCTGATGCTGGCACATTCTTCGT
TACGGAGTATTAGAACTCTAGAATTCAGTCCCAAAAACTTCCGAGTCACC
CAGCTCAATGTGTGTCTTGTCCATCCATCTGCCTCCAACATGTCTGAATC
CTGATATGGAGGCATGTTTCTACGTGCGTCATGCCCCCCTGAAAATGTTT
TCTTGAAAGACTGGGCGCACACGGCTGACGTCAAAGCAAAAATAGTGCTA
CAGTAGTAGTAACACAAAAACAACGCGCGCACAATCCGCACGATACGACG
GAATTTTTCGCCTCCGCGAGCACTGATCGGACACGCGCCTTTGTCTCACG
ACCCGGTGAGGGCAAAAGAAAGAACAGGAAGCACACAACAGAGCGCCGAG
GTACAGGCATCGGTGGTGTCAAGGGGGCACCAACAGCCCAGTTTTCGGCT
CTGTGGTGGCGGTGCCGGAGCGTTGTGGGTGGCCGTAGTGAGCGTGCCTT
ATGCCGAATTATTCGACCGGCTTTGCGGTGATTGTGTGGTGGTTGTGATC
CATGTACATTGATCGTACCCGCCCCGCCTCCGCCTCTATTCGTTTGTTTT
TCAGGATTCCGGGAAGCTGAACAAGCTCATAGAGGCGGACCCACTGATCG
CCAAGGAGATGCTGTACTCGCTCTCCAAGGAAGTTTTCCGCATGAGCAAG
CTGCGGACGCCGCTGCTGGAGCAGGTGAGTCGCAAAAGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig790:235..5226-

>mRNA_L-elsbetiae_contig790.16851.1 ID=mRNA_L-elsbetiae_contig790.16851.1|Name=mRNA_L-elsbetiae_contig790.16851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig790:235..5226- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGAGGCGGTAGGACTGGAAGGAGAAGACGAGGAGCTCGAGATCTA
TGAACAACCCCCACCCGGCCCCAGTCTTGGCGAGAGGCACGCGGTGGATG
ACAAGGCTATCAGCAACCTTACAAGCGAGCAAAAGCAGGAGGCTGCTAGG
TGCCTGCGACTGACCACCATGTTCAAGTTCTGCTCGGACGAGAGCATCAC
GAGGGTTGTGGATCACATGAGACGTGAAGAGTTCTCGGAGGGCGAGATGC
TGGAGGCGGTAGGACTGGAAGGAGAAGACGAGGAGCTCGAGATCTATGAA
CAACCCCCACCCGGCCCCAGTCTTGGCGAGAGGCACGCGGTGGATGACAA
GGCTATCAGCAACCTTACAAGCGAGCAAAAGCAGGAGGCTGCTAGGTGCC
TGCGACTGACCACCATGTTCAAGTTCTGCTCGGACGAGAGCATCACGAGG
GTTGTGGATCACATGAGACGTGAAGAGTTCTCGGAGGGCGAGGTTCTTCT
GGAGCAGGGAGACCCGCAGTCCCGAGTGTTTCTCATAACGCAGGGCTCTG
TGTCGCGGCTGCGGTACCTGAACGAGCAACTTCACCAGGTCGAGACCGTC
GGCGGCGAGAGTCACAGGTTCTTCTGGAGCAGGGAGACCCGCAGTCCCGA
GTGTTTCTCATAACGCAGGGCTCTGTGTCGCGGCTGCGGTACCTGAACGA
GCAACTTCACCAGGTCGAGACCGTCGGCGGCGAGAGTCACAGAGGGATGT
TCGGAGCTCTGCACGTGCTCAGGGAAGAGCCCACGTATGCAACAGCACTC
ACCGAGACCGATGGCGTGGCCTACACCCTGAGGGATGTTCGGAGCTCTGC
ACGTGCTCAGGGAAGAGCCCACGTATGCAACAGCACTCACCGAGACCGAT
GGCGTGGCCTACACCCTGGATTCCGGGAAGCTGAACAAGCTCATAGAGGC
GGACCCACTGATCGCCAAGGAGATGCTGTACTCGCTCTCCAAGGAAGTTT
TCCGCATGAGCAAGCTGCGGACGCCGCTGCTGGAGCAGGTGAGTCGCAAA
AGGTAGGATTCCGGGAAGCTGAACAAGCTCATAGAGGCGGACCCACTGAT
CGCCAAGGAGATGCTGTACTCGCTCTCCAAGGAAGTTTTCCGCATGAGCA
AGCTGCGGACGCCGCTGCTGGAGCAGGTGAGTCGCAAAAGGTAG
back to top