mRNA_L-elsbetiae_contig7897.16846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7897.16846.1
Unique NamemRNA_L-elsbetiae_contig7897.16846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7897.16846.1 vs. uniprot
Match: D8LND1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.940e-18
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  428 MTIRLTPELLGRL--KGPGPKPKIELVLKSAEGGGGPVLIVGGVPYNMNAHKMAVGSEVDILAKTNNSEG 631
            MTIRLTPE+LGRL   GPGPKP+IELVLKSA G GGPVL+VGGV + ++AH+MA+GSEV +LA+T    G
Sbjct:    1 MTIRLTPEVLGRLMMNGPGPKPEIELVLKSA-GEGGPVLLVGGVSHKLDAHQMAIGSEVHVLARTQQQPG 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7897.16846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LND1_ECTSI2.940e-1868.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7897contigL-elsbetiae_contig7897:4306..8436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size635
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7897.16846.1prot_L-elsbetiae_contig7897.16846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7897 4306..8264 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.8928645-CDS-L-elsbetiae_contig7897:4305..44151622816872.8928645-CDS-L-elsbetiae_contig7897:4305..4415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7897 4306..4415 -
1691683877.4689028-CDS-L-elsbetiae_contig7897:4305..44151691683877.4689028-CDS-L-elsbetiae_contig7897:4305..4415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7897 4306..4415 -
1622816872.9049401-CDS-L-elsbetiae_contig7897:7912..82641622816872.9049401-CDS-L-elsbetiae_contig7897:7912..8264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7897 7913..8264 -
1691683877.477886-CDS-L-elsbetiae_contig7897:7912..82641691683877.477886-CDS-L-elsbetiae_contig7897:7912..8264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7897 7913..8264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.917446-UTR-L-elsbetiae_contig7897:8264..84361622816872.917446-UTR-L-elsbetiae_contig7897:8264..8436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7897 8265..8436 -
1691683877.486707-UTR-L-elsbetiae_contig7897:8264..84361691683877.486707-UTR-L-elsbetiae_contig7897:8264..8436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7897 8265..8436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7897.16846.1

>prot_L-elsbetiae_contig7897.16846.1 ID=prot_L-elsbetiae_contig7897.16846.1|Name=mRNA_L-elsbetiae_contig7897.16846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MIAPPASSGGSLLHRPLSEQDYAAACGSRRPHHAATSSAGCYPFGPNAPA
IELRPRPGCNDEHGEAEGRGSPSPHKEEILKPQTGMTIRLTPELLGRLKG
PGPKPKIELVLKSAEGGGGPVLIVGGVPYNMNAHKMAVGSEVDILAKTNN
SEGG
back to top

mRNA from alignment at L-elsbetiae_contig7897:4306..8436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7897.16846.1 ID=mRNA_L-elsbetiae_contig7897.16846.1|Name=mRNA_L-elsbetiae_contig7897.16846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4131bp|location=Sequence derived from alignment at L-elsbetiae_contig7897:4306..8436- (Laminarionema elsbetiae ELsaHSoW15)
CGACCACTCGTGACTTTACCTACTTCACATCTTCTGTTTATTCGTGTTTC
TTGGTCCGGCGGGTCCCAGGGGGCAAGAAGTAGCAGTAGTTGAGATGGTT
GGATAGACCCCAAAACCCCAAGGAAATTGCGGCGCAACCCCTGTCCGGAG
ATATTTTCAAACGCAGATCATCATGATAGCACCACCGGCATCAAGCGGGG
GCTCTCTCCTCCACCGCCCTCTGTCAGAACAAGACTACGCCGCCGCTTGT
GGTAGCAGGCGTCCTCATCATGCAGCTACTTCATCGGCGGGTTGCTACCC
CTTTGGCCCAAACGCTCCAGCGATTGAGCTCCGGCCGAGGCCCGGCTGCA
ACGACGAGCACGGAGAGGCGGAGGGGCGTGGTTCACCTTCGCCTCACAAG
GAGGAGATTCTCAAGCCGCAGACGGGAATGACGATTCGCCTCACGCCCGA
GCTTCTCGGTCGCTTGAAGGGGCCGGGGCCCAAGCCGAAGATAGAGCTGG
TGCTCAAGAGTGCGGAGGGCGGAGGTACGGGCACACCCCGGGGTTACGCC
GCTTTTCCGCAATAGATAAAAGTGTCACAAGGTGGTCGGGATGGTAGACT
GCAGACTACATCATGTTACAACCGTCAATCTACCTCCCCCACACACTGCC
TGTGCATGCTTACACTAACCTGGGTCAACAACCTTCAGCCACCGTGGCTC
CTAGGCAAGTTGTTGTACAGAGCAACCACCGTCCGTCTGGTTCGAAATAA
TGCCAGACGCCAGATGTGTGTGAATGTGAACTATTAATATTTATTATTTA
GATAAATAAATAGATAAAAACGAACTGCTGTGTATCTAGATTGCTGTGTG
TTAATACTAGTTTGCGAATAATGAGCCGCACACACCTAACCCAACCCAAC
CAGCACCGGCTCAATACCTTGCAGTAGTCTGAGCAACCCACCCGCGCGGA
CTCACGGCCCCAACCCAACCCAACCCAACCCAACCCACCCGCGGACCCGC
GGCCCCAACCCCACCCCACCCAACTCAGCCCAACTCAGCCCAACCCAACC
AAAGACCCACCCGCGGACCCACGGCCCCAACCCAACCCGACCCAACCCAA
TCCAACCCAACCCACCTGCGGGCCCAAGGCCCCAACCCGACCCAATCCAA
CTCAACCCAACCCAACAAACACAACCCGTGGATCCACACACCCACCACAA
CTCAACACAACCGGCACACCGTTCGTGGCTCGAGGCCATTTACACGTGGC
CACTTTTTGCCCTGGCAGGGGTGCGAAATGCCACAGGATTCATCCCAACC
CTCTTGGAGAGCATAGTGGCCACGTTTGAAATAATCTATGATGACCCCAA
AATACGCTGTGGTAGTGCAGCTCCGCGTAGAGCCGACAGCAGCAGCGTTG
ATGTATGTAGGAGGGGTTTTGAAGGACAATTGATTCCATACAGTATATAT
ACGTATATTCGCAAGCGCATCGTATCCAATATATTCTAGTGTAGAGGCGG
GAGCGAACGATTCCAGCTCATCCCGCCCGGGTTCTAACCTGGTGAGACCT
TCTCTTTTTTTTCGAAAAAAGTCGTTTTATTTTGTGTAGATACATTTTCA
GTTTTATTCGAAACATCAACCCTGAGGTACTTACTCCCTCTGCAAAGGGC
CCGAATCCTCTACAGGGCCCATATTTCCTGTGCCCTGGCAGGGGTGCGAA
AAGCTACAGTGTTCATGTGACCCCAACCCTCTGGCTGAGCAAAGTGGCCT
CGTGTGTTGTCTCGCACGCACACACGCCGCGGCGCGTGCGTGTTTTGGAA
TTCTGTGCTGCCAGTACCATGTCACCCCTGCATGACCAGTGAACCCATGC
TGCCCTTCCCCCGCCAGTCTCGTCTCGCTCCTCCCTCGTCCTAAAGTGGG
TGCTGTGTGGTGCTGTGCTCTATGGCCTCTCCACAAGACGGCGAGACTGT
CAAAATTCGGGATCTCCGGCTAGCATGCCTTTCTCATGTCAAACCCGGGG
TTTGCTCTTACGTAGCCCGGGTCTCCGTAATAAATTTGGACAAACGACTG
TGAAGCACGGCCATCTGTTGTCGGAGCACAGCTAAACAGGCGTGAAGAAA
ATTCCCTAATTTATCTCCCCTCTCAGAAGGCAACAGATCGTCAATCGGTG
CTCTATAGACTTTGTTCTGGCCGAAAAGGAGGGTATTTTTGGACGGTCGA
TAATCAAGTTTGGAGGGGCGCTACACGCGAGCGAGGTAACTTTGCCCGAT
ATTTAGAGCCTTTTTTTTTTTTGCCCTCCCTGGGGGATGAAAGGGAAAAA
AGTCGCGGCTTCGCCGCTCCGCGCCTCATTATTAATATTTACAAGAGCTC
CGGACGCGGGGGCCTACCGCCCCGCCCCCCGTCCTTCGGTTTGTGATAGT
CATGGAGGGTTCGACGACGTGTGGTACAGTTACCCGTGTTACCAAGGGTA
ACAGGCCTGTCTGCAGCAGCTGGTCTGAAGCCGTTGTGCTTTCGAGAAAG
CGAGTTCTACAGCAGCAGGAATACTCGACAATTTTGACCTTTTCAGCGCT
TGGTTCTCTGACGTATGACGGGACGTGCGAAGTGCGCGTGCGCCACCGCG
CGGCGCAGCCGCTGCCTAGGCTTACCGCTTCCCTCCAACCTAGCACCTCA
CTAACTTACCAACGACCTGCGACCTACAGCTCACCCAACGCCCCCCGATG
AGTCAGGGCTTACGGTTTGGGGTGAGGATAAGGGTCAAAAAGGGAAACAC
AATCAGCGTCCGGTACGCAATTTGAAAAAGGCCGGTTGTATGCAGGTGCT
TGCTGACTCTTTAAAGACTGCAGTTTTCAAGCCCAGGTCATCGTCGCTCG
CATGACTCGAACGCGTCTAGACTCGATTCCACGGCAGCGGTTCTGTGTGT
GTTGGAAAGACTTTTCTCGTTGACCTCGCGCAAGGGGAAAAGCCGAACGG
TGCTGGCGCGTGGTCGCTGAGAGAGGCAACACTTAGCGTATCGATTTGAG
AGGGGGACGAGTTCCGCCGCTGCTCGCACAGCGGTCGGGCTGAGAGAGCG
CTGCGCTCTCAGCGACTTAGAACTGAAGATCCATATCCCATCGTGATATG
AATTACCCCTATGTAGAGACACGGGACACTGCTGTCCAGGCCTTCTTCTC
TGCTGGCCGCACCGCACCGACTCGCGCCTGCGCGTTTTACCACCGCACCC
TCTCCTCGCCACAAAAGTAGTATTGTTGTCCGATAATGTTGGCCGACTTT
TCGAGATTTTCTTTGGCGTTGTCCTGTTCGACCTCGGGCACTCATCCTGA
CCCTATAATAGCCCCCAATCCTGACCCTCACCCTAACCTTCCCCAACAGC
ATCCGTCGTGTCACCACTGCCGTGTTGTGAATCCATCCCTGTGTATTGCC
TCCAAGTACTCGAATCTGCAGAGCCTCTGCGGGAGAATGAGAAAAGTGCC
CTTTTTTTTTGCAGCATCTATTATTTAGAAGCCTCGTCGCCGCTTTCCTG
GGCGGCAGCGCCCCTAGCAGAGGTGCAACTGAATTCTGAGGGCAGGAGGA
AAGTAGACAGAACCAACCTCCGTGTGTGTTGGTCGTATGTATGACAATAC
GGAAAAGGGAAGCACAGGATTTATGACTGCATAAAATACAGACAGACCTG
ATAGGCTGTTCTATGATTTCTCTCCGCACGTGCTACTTTAGATGTGCCCA
CGCGTGGGCGTGCGTGCACCTCATTGATGTTCCAGTCTTCACCCCCCCCC
CCCCCGGCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCANNNNNNNNNCCCCTC
TTTGCTGTTCCAGTCCTCCCCCCCCCCCCCCGGGCGCCCGCGCCCCCCCC
CCGGGCCCCCCTCCCATTTTGCCTTGCGCCTTCGCGACACTTCGATCCCG
CCGCTGCCTACAAACCACGTACATGTATAAATTAAATGTATAAATTAAAT
GTATGTACATGCATGCTACAGGTGGCCCCGTTCTGATCGTGGGAGGCGTG
CCGTACAACATGAACGCGCACAAAATGGCCGTGGGGTCCGAGGTGGACAT
ACTGGCAAAAACGAACAACTCCGAGGGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7897:4306..8436-

>mRNA_L-elsbetiae_contig7897.16846.1 ID=mRNA_L-elsbetiae_contig7897.16846.1|Name=mRNA_L-elsbetiae_contig7897.16846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig7897:4306..8436- (Laminarionema elsbetiae ELsaHSoW15)
ATGATAGCACCACCGGCATCAAGCGGGGGCTCTCTCCTCCACCGCCCTCT
GTCAGAACAAGACTACGCCGCCGCTTGTGGTAGCAGGCGTCCTCATCATG
CAGCTACTTCATCGGCGGGTTGCTACCCCTTTGGCCCAAACGCTCCAGCG
ATTGAGCTCCGGCCGAGGCCCGGCTGCAACGACGAGCACGGAGAGGCGGA
GGGGCGTGGTTCACCTTCGCCTCACAAGGAGGAGATTCTCAAGCCGCAGA
CGGGAATGACGATTCGCCTCACGCCCGAGCTTCTCGGTCGCTTGAAGGGG
CCGGGGCCCAAGCCGAAGATAGAGCTGGTGCTCAAGAGTGCGGAGGGCGG
AGATGATAGCACCACCGGCATCAAGCGGGGGCTCTCTCCTCCACCGCCCT
CTGTCAGAACAAGACTACGCCGCCGCTTGTGGTAGCAGGCGTCCTCATCA
TGCAGCTACTTCATCGGCGGGTTGCTACCCCTTTGGCCCAAACGCTCCAG
CGATTGAGCTCCGGCCGAGGCCCGGCTGCAACGACGAGCACGGAGAGGCG
GAGGGGCGTGGTTCACCTTCGCCTCACAAGGAGGAGATTCTCAAGCCGCA
GACGGGAATGACGATTCGCCTCACGCCCGAGCTTCTCGGTCGCTTGAAGG
GGCCGGGGCCCAAGCCGAAGATAGAGCTGGTGCTCAAGAGTGCGGAGGGC
GGAGGTGGCCCCGTTCTGATCGTGGGAGGCGTGCCGTACAACATGAACGC
GCACAAAATGGCCGTGGGGTCCGAGGTGGACATACTGGCAAAAACGAACA
ACTCCGAGGGCGGCGTGGCCCCGTTCTGATCGTGGGAGGCGTGCCGTACA
ACATGAACGCGCACAAAATGGCCGTGGGGTCCGAGGTGGACATACTGGCA
AAAACGAACAACTCCGAGGGCGGC
back to top