mRNA_L-elsbetiae_contig7894.16843.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7894.16843.1
Unique NamemRNA_L-elsbetiae_contig7894.16843.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7894.16843.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 7.180e-8
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  133 WDGDIDPWAEAESRALMQQFKNSVLDEDGLSVRELSEEGARRVADQAADGLLDL 294
            W   +D     + +ALMQQFK SVL EDGLS+R +S+E A+ +ADQAA GLLDL
Sbjct:    2 WRQLVDASLAKQIQALMQQFKESVLGEDGLSLRAMSDESAKELADQAATGLLDL 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7894.16843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K9_ECTSI7.180e-857.41HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7894contigL-elsbetiae_contig7894:5544..9174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog2880.D7G5K9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816872.6456685-CDS-L-elsbetiae_contig7894:5543..57171622816872.6456685-CDS-L-elsbetiae_contig7894:5543..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7894 5544..5717 +
1691683877.2916446-CDS-L-elsbetiae_contig7894:5543..57171691683877.2916446-CDS-L-elsbetiae_contig7894:5543..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7894 5544..5717 +
1622816872.660815-CDS-L-elsbetiae_contig7894:9053..91731622816872.660815-CDS-L-elsbetiae_contig7894:9053..9173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7894 9054..9173 +
1691683877.3074396-CDS-L-elsbetiae_contig7894:9053..91731691683877.3074396-CDS-L-elsbetiae_contig7894:9053..9173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7894 9054..9173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7894.16843.1prot_L-elsbetiae_contig7894.16843.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7894 5544..9173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7894.16843.1

>prot_L-elsbetiae_contig7894.16843.1 ID=prot_L-elsbetiae_contig7894.16843.1|Name=mRNA_L-elsbetiae_contig7894.16843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
SKGYRHHTPQLNDRSSSASLDRRRPAPTRLEATPQQSHLDSDVWWDGDID
PWAEAESRALMQQFKNSVLDEDGLSVRELSEEGARRVADQAADGLLDL
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mRNA from alignment at L-elsbetiae_contig7894:5544..9174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7894.16843.1 ID=mRNA_L-elsbetiae_contig7894.16843.1|Name=mRNA_L-elsbetiae_contig7894.16843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3631bp|location=Sequence derived from alignment at L-elsbetiae_contig7894:5544..9174+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGGGGTACCGGCATCACACGCCGCAGTTGAACGACCGCAGCAGCAG
CGCTTCCCTCGACCGGCGAAGACCAGCGCCGACTCGCTTGGAAGCCACGC
CGCAGCAGAGCCATCTAGACAGCGATGTATGGTGGGATGGGGACATCGAC
CCCTGGGCGGAGGCTGAGAGCAGGGTAAGAGGGTGTGACGGAAGCGGGAC
GGATGGGACAACTCTCGGAATTGGCGCGTACGTAAGCAAGCGGTTACGTG
TGCACAGGCAGCAGCCAGTTGCCTCGGTGGTGATTGAGAGGAGGGACCAC
CACCACCACCACAATCGTCGCTGCGTTCGTGATTTCCTGTGGTGGCTTGC
GTTTTGTACTGCCTGTGACACCAATTATGCCACCATGTAGACTACTATCC
ATCCATGTACTAGATACGTTGTTGCTGTTGTACAGAGGCGGAGGCAACGG
CAGCAGAGGCGACTCCAGCGTGTGCCTTTGGCACACGCACCGCCGTTACA
TACATACATATGCTGTCTACATAGCCAGAGATGCAGCTAGGTACATAACT
GTGTATGCATGGGCCCATGTGGTGTGCATGTTGGCGAGGGGTCCACGGTT
GGCGTCTGACCCCGAGGTTCGAACAGATCTACCCTCCCTCTCCTTCCCTC
GCCCCTTTCGGTATAATACAAACTGCAGCTTGATTGCCGTAGTTGACACT
AGATATCACCCCCCCCTGGACATATTTTCAAAGCTCGATTACTCCCCAGC
AGGATTAGTGCCAGTGCCGAAATGAAGTGGCGTTGGAAAGGTCTAGTCGG
GGGCTATCTGGAAATGTGTCGTTTGGGTGCTGGCGCCTTCTCCGCTACGG
AGGAATCAAGCTCTGAAAATCTGTCGAGAGGGGGGGGGAGGGGGGTGGTA
TCTCGTGTCACCTACGGTAGTACCGTAGGTGACATAAGATAGGACACCCC
CTGGACCGATTTTGAAAGCTTGGTTATTCCGCAACGAATACGATATTTAA
ACGCCATATTTTCGGACAGCTCTTGACGAGATCTTTTCAACGCCGCCCTT
TTCGGAACTGACGCTCTGCTTGCTGTGGAGTAATTGAGCATTGAAAATCG
GTCCAGGGGGTGTCTTATCTTGTGTCACCTACGGTAGTAGATGCCTACCG
TTGGTTCCCTCTTTGCCACGCAAGCACCCCGGCTTGCTTCTTTCTGTACT
GGTGTGTGCTGTTCGTCAAATGGCACGCTTCCGTGTGGAAATACTTCCAT
GTAGTGGCTGCCGAATGGCATACGTAGGTACCTAGGAGATCTAATATGTA
GACTAGATACGTACGTATGTAACCCTCCAATGGACCAAGGACGGAGTGGA
TGTGGAGAGGGCGTGCATAGTTGGTTTCATTGGAGTCAGAAGAGTTAGTT
GGAGACAACAACAACAACAACAACAACATTCAACAACAAACGACTCGCCG
TGATATTTGCGGTTGGCTTGGCGGAGTTGTGCAGGGAGCCTTTTTAACTT
AAAAACATTTATTTTAGAGCAATGGCCAAAAACGGGCACACTCGAATGGT
ATCCGGCCAAAAACGGGTACCCTATTGAATACACCAATGAAAGTTCCCGC
CCCGTACCCGATCCTGGCCGCATTTCCGCCGGGTACACCCGATTTTGGCT
ATTCAACCCTCGGAGGTGTATTTACCCGGTTCTCATTACCCATACCCGAT
TATGGCCACAGCAGACTACTCAAACAACAGCCGACACACGCACAAGCGCA
CGACTTTTTTTCTTCCTCGGCGTCGAGTGTGCCTTGCTTTGTGACCAAGG
GCCCCCAAGGATGTTTTGGACTAGAGAGCTAATGCGAGAAACAACAACAA
CATCGACAACGGCGGTGGTCACGCCAAGGCGCGGCAGAACATAGTAATTG
TATCAGGGCACGAACTTGAACACCGAACCGATCATGGAGTGGTGGTGTTC
GCCATGGACAACGACGACGTCAAACACCCTCATGATACATACACGACACA
TGACGACGGTTCAGAAACCCTAAAGGGTCACATAGTCCGGGGAGACTTTT
CGTGTGGAAATATTAGGGTACCCGTTCTTGGCCGGGTACCGTTCGGGTGT
ACCCGTTCATGGCCATTGCTCTTTATTTCATCATATTAACGAATGTCTCT
ACTCCGTATATATGTACATACATATGTCGACTCTAAACGTCAGCAGTCCA
AGCCCCAACGTGCGAAAGAGTCAGGTCCACCAGGGGTACTGCTGTTGCGT
TATTTAGGCATACTAGCCCTCCCTCACTACTGTCCGAGCCACTTGCTCAA
AATCCGAGGTCCGTACAATACATGTGTGGTTCTTCGGTGGAACACTCATT
TCAGAGGGCCTTGTTCCATGAAAACTTACCTTCCCGCGCACCGTTCCAGT
TTAATTAAATATGGGCATAAAATCCGTAAAAACCGGTAATTCTTGCTTCA
GTACCATGTACCCTTTGTAGGGTAAGTTATCCTGACCACGGGAATTGAGT
CGACCGCGTCAGTGTTGGACTATTTAGTACGGACTCATGGAGGTGTACTG
GATAGAGAGATCGGAACGGTTTTTAATGCGAAGATCGACAACAACAATAT
AGTTCGCTGGTACATATGTACATACATACATACATACATACATAGCTTGT
TTGTGGGTTTTGTTCGGGAAGTGCTGTTCCATGTATGCAGGCGTTTTCCT
ACTCTGCCGGACCAATACGACGTCACTACTGCTGTTACTGTTGTGCTGAT
CCGTTAATTCACGATGGAGCAGTGTAGTTAGTCTACATACGCAGGGCTTT
CGCCTTCGGCTAACATCTGAGATGAAGAGTACACATGGAAAACGGGAAAA
GGGGGGTCGGTGGTTGGAGTTGGAGTTGGGGTTAGGGTTAGGGTTATTTT
TATAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGGAAGG
ACTCGATTTGGGGTTCAAACGGTATTTCATACGGGGACGTATGTAACATT
TGGCGAAGCGAGCAGAAAAAGAACCTAAAATATCAGAAGAGTTCATTCAA
CATCTCGCCTGCAAAAAAAGATTTAAGATTTGCGAGGTCGGCCAACAATT
TTTCAGGCGGGTATTTTCCTAAATGAACTTAACTTCCGGCGTAGGCGGTC
AGTAGTCTACGCAGGGTTTTCGTCTTCAGCTAACATCTGAGAGATACAGT
GAGGGGAGTCGGTTCCCCACGGGGTCCCGTCTCGAGTGTGTGAGTGTGGC
GGGGGGGGGGGTCTTTAAAAATAAACAATGAATCAAAGATGGAACCTACC
CCACACTAGAGCAAGGACTCGATATGGTGTTCAAACGGTATTCCATACAG
AGACGTACTATTTGGCGAAGCGAGCAGAAAAACAAGCCTAAAATATCAGA
AGAGTTCAACAACTCCTGGTTTATTTTCAAACAACACCACAACAACAACA
GCAGCAGGTGTTTCTTGATATGTATTCGATATTCTCCCCCCCCCCACCCC
CATCGCCCAGGCCTTGATGCAGCAGTTCAAGAACAGCGTCTTGGACGAAG
ACGGCTTGTCGGTGCGTGAGTTGAGCGAGGAGGGCGCTAGGAGGGTCGCC
GACCAAGCTGCGGACGGCCTTCTGGACCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7894:5544..9174+

>mRNA_L-elsbetiae_contig7894.16843.1 ID=mRNA_L-elsbetiae_contig7894.16843.1|Name=mRNA_L-elsbetiae_contig7894.16843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig7894:5544..9174+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGGGGTACCGGCATCACACGCCGCAGTTGAACGACCGCAGCAGCAG
CGCTTCCCTCGACCGGCGAAGACCAGCGCCGACTCGCTTGGAAGCCACGC
CGCAGCAGAGCCATCTAGACAGCGATGTATGGTGGGATGGGGACATCGAC
CCCTGGGCGGAGGCTGAGAGCAGGAGCAAGGGGTACCGGCATCACACGCC
GCAGTTGAACGACCGCAGCAGCAGCGCTTCCCTCGACCGGCGAAGACCAG
CGCCGACTCGCTTGGAAGCCACGCCGCAGCAGAGCCATCTAGACAGCGAT
GTATGGTGGGATGGGGACATCGACCCCTGGGCGGAGGCTGAGAGCAGGGC
CTTGATGCAGCAGTTCAAGAACAGCGTCTTGGACGAAGACGGCTTGTCGG
TGCGTGAGTTGAGCGAGGAGGGCGCTAGGAGGGTCGCCGACCAAGCTGCG
GACGGCCTTCTGGACCTGGCCTTGATGCAGCAGTTCAAGAACAGCGTCTT
GGACGAAGACGGCTTGTCGGTGCGTGAGTTGAGCGAGGAGGGCGCTAGGA
GGGTCGCCGACCAAGCTGCGGACGGCCTTCTGGACCTG
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