mRNA_L-elsbetiae_contig782.16770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig782.16770.1
Unique NamemRNA_L-elsbetiae_contig782.16770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: D7G8X7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8X7_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 7.360e-98
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFASP 435
            ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPF GGCFNLEIEFPAEYPFKAPKV+FVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQ   MLQEPHADNPLEADIARQLAEDK+AFTQTAKKWTLDFASP
Sbjct:    8 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFGGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQ---MLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFASP 148          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A835Z9K8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.190e-65
Identity = 95/143 (66.43%), Postives = 119/143 (83.22%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            EL ELRK  L+WC   P+DD+IM W+AM+VGPD++P++GG F L+IE   EYPFKAPKVKF+TRIYHPN++T+ GEIC+DILN+NWGPTLN+++VLNT+RQ   ML EP A++PLE DIARQLAEDK  F +TA K+T DFAS
Sbjct:    8 ELTELRKAPLDWCQCGPVDDNIMHWSAMMVGPDNSPYAGGVFQLDIEMSPEYPFKAPKVKFLTRIYHPNIRTEGGEICADILNDNWGPTLNLSHVLNTLRQ---MLLEPSAESPLEPDIARQLAEDKAQFLKTAAKYTADFAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A6V1MVK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MVK4_HETAK)

HSP 1 Score: 200 bits (509), Expect = 9.830e-64
Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            EL  L K  L++    P  DDIM+W AMLVGP +TP+ GG FNLE++FPAEYPFKAPKVKF+TRIYHPN+KTDSGEIC+D++NENWGPTLN  YVL  I+Q   +L+EP AD+PLEADI RQL ED+ AF +TA KWT D+A+
Sbjct:    8 ELQALEKAPLDFVTAGPAGDDIMKWQAMLVGPANTPYEGGVFNLELDFPAEYPFKAPKVKFLTRIYHPNIKTDSGEICADLINENWGPTLNTQYVLTVIKQ---LLEEPSADSPLEADIGRQLTEDENAFKETAAKWTADYAT 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A024U3D9_9STRA (UBC core domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U3D9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.600e-62
Identity = 86/143 (60.14%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  EWC + P+DDD++ W AM+VGP++TP++GG F++++ FPAEYPFKAPKVKF+TR+YHPNVK+ SGEIC+DI+NE+WGPTLNV + L  ++Q   ML++P ADNPLE +IA+ L  +++ F  TA+KWT DFAS
Sbjct:    8 ELAEFNKNSPEWCTVGPVDDDLLHWNAMVVGPENTPYAGGVFSIDLVFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADIINESWGPTLNVLHCLTALKQ---MLEQPDADNPLEPEIAKLLHGNRDVFNDTARKWTKDFAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A067CHA9_SAPPC (UBC core domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA9_SAPPC)

HSP 1 Score: 196 bits (497), Expect = 6.600e-62
Identity = 85/143 (59.44%), Postives = 117/143 (81.82%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  +WC +  +DDD++ W AM+VGPD++P++GG F++++ FPAEYPFKAPKVKF+TR+YHPNVK+ SGEIC+D++NENWGPTLNV + L  ++Q   +L++P  DNPLE +IA+QL  +++AF +TAKKWT DFAS
Sbjct:    8 ELAEFNKNSPDWCTVGTVDDDLLHWNAMVVGPDNSPYAGGVFSIDLLFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADVINENWGPTLNVMFCLTALKQ---ILEQPDGDNPLEPEIAKQLQCNRDAFNETAKKWTKDFAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: G4YF85_PHYSP (UBC core domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=G4YF85_PHYSP)

HSP 1 Score: 195 bits (496), Expect = 9.370e-62
Identity = 86/143 (60.14%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  EWC +  +DDD+M W AML GP+D+P+SGG FNL+++FP+EYPFKAPKV+F+TR+YHPNVK+ SGEIC+DI+NENWGPTLNV + L  I+Q   +L++P  DNPLE +IA+Q+ E+K  F +TA++WT  +AS
Sbjct:    8 ELAEFEKNSPEWCTVSAVDDDLMHWNAMLAGPEDSPYSGGVFNLDLQFPSEYPFKAPKVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQ---ILEQPDMDNPLEPEIAKQMHENKADFEKTAQEWTKQYAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A835YRR6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR6_9STRA)

HSP 1 Score: 195 bits (496), Expect = 9.370e-62
Identity = 91/143 (63.64%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAEL+++ L+WC  +P +DDI++WTA +VGPD TP+ GG FN+ +EFPAEYPFKAPKVKF TRIYHP+V+T +GEIC+D+L  NWGPTLNVT+VLNTIRQ   ML EP  ++PLE +I R L EDK+AF + A K T +FAS
Sbjct:    8 ELAELKRSPLDWCTCEPQEDDILQWTATIVGPDGTPYEGGIFNISLEFPAEYPFKAPKVKFQTRIYHPHVRTATGEICADVLLNNWGPTLNVTFVLNTIRQ---MLIEPSTESPLEPEIGRLLIEDKQAFIKNAAKCTAEFAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A2D4CAW9_PYTIN (UBC core domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAW9_PYTIN)

HSP 1 Score: 194 bits (492), Expect = 3.810e-61
Identity = 84/143 (58.74%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  +WC +  +DDD+M W AM+ GP+D+P+SGG F+L+++FP EYPFKAPK++F+T++YHPN+KT SGEIC+DI+NENW PTLNV + L  I+Q   +L++P  DNPLE +IARQL  DKEAF QTA++WT  +A+
Sbjct:    8 ELAEFEKNSPDWCTVGSVDDDLMHWNAMVAGPEDSPYSGGVFSLDLQFPNEYPFKAPKIRFLTKVYHPNIKTSSGEICADIINENWAPTLNVLHCLQAIKQ---ILEQPDVDNPLEPEIARQLQSDKEAFHQTAQEWTKQYAT 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: K3W7Y2_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7Y2_GLOUD)

HSP 1 Score: 190 bits (482), Expect = 1.270e-59
Identity = 83/143 (58.04%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  EWC +  +DDD+M W AML GP+++P+SGG F+++++FP EYPFKAP+V+F+TR+YHPNVK+ SGEIC+DI+NENWGPTLNV + L  I+Q   +L++P  DNPLE +IA+QL  ++E F  TAK+WT  +AS
Sbjct:    8 ELAEFEKNSPEWCTVGAVDDDLMHWNAMLAGPENSPYSGGVFSIDLQFPNEYPFKAPRVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQ---ILEQPDVDNPLEPEIAKQLQSNREEFDNTAKEWTKQYAS 147          
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Match: A0A397DVW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DVW9_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.050e-57
Identity = 87/143 (60.84%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFAS 432
            ELAE  KN  EWC + P+DDD++ W AM+VGP++TP++GG F++++ FPAEYPFKAPKVKF+TR+YHPNVK+ SGEIC+DI+NE+WGPTLNV + L  ++Q   ML++P ADNPLE +IA+QL   ++ F  TA+KWT DFAS
Sbjct:    8 ELAEFNKNSPEWCTVGPVDDDLLHWNAMVVGPENTPYAGGVFSIDLVFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADIINESWGPTLNVLHCLTALKQ---MLEQPDADNPLEPEIAKQLHGSRDVFNDTARKWTKDFAS 147          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig782.16770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X7_ECTSI7.360e-9895.83UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z9K8_9STRA4.190e-6566.43Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6V1MVK4_HETAK9.830e-6465.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024U3D9_9STRA6.600e-6260.14UBC core domain-containing protein n=4 Tax=Aphanom... [more]
A0A067CHA9_SAPPC6.600e-6259.44UBC core domain-containing protein n=4 Tax=Saprole... [more]
G4YF85_PHYSP9.370e-6260.14UBC core domain-containing protein n=17 Tax=Perono... [more]
A0A835YRR6_9STRA9.370e-6263.64Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A2D4CAW9_PYTIN3.810e-6158.74UBC core domain-containing protein n=2 Tax=Pythium... [more]
K3W7Y2_GLOUD1.270e-5958.04UBC core domain-containing protein n=1 Tax=Globisp... [more]
A0A397DVW9_9STRA1.050e-5760.84Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig782contigL-elsbetiae_contig782:436..5612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue3.5e-76
Seed eggNOG ortholog2880.D7G8X7
Preferred nameubcB
KEGG koko:K13280
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009653,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048856,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
EC3.4.21.89
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-15_004630.1
Exons4
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig782.16770.1prot_L-elsbetiae_contig782.16770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig782 436..5612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.395917-CDS-L-elsbetiae_contig782:435..5341622816866.395917-CDS-L-elsbetiae_contig782:435..534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 436..534 +
1691683872.5064764-CDS-L-elsbetiae_contig782:435..5341691683872.5064764-CDS-L-elsbetiae_contig782:435..534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 436..534 +
1622816866.4084618-CDS-L-elsbetiae_contig782:1763..18411622816866.4084618-CDS-L-elsbetiae_contig782:1763..1841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 1764..1841 +
1691683872.5180118-CDS-L-elsbetiae_contig782:1763..18411691683872.5180118-CDS-L-elsbetiae_contig782:1763..1841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 1764..1841 +
1622816866.41844-CDS-L-elsbetiae_contig782:3925..40631622816866.41844-CDS-L-elsbetiae_contig782:3925..4063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 3926..4063 +
1691683872.5291755-CDS-L-elsbetiae_contig782:3925..40631691683872.5291755-CDS-L-elsbetiae_contig782:3925..4063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 3926..4063 +
1622816866.4283838-CDS-L-elsbetiae_contig782:5489..56121622816866.4283838-CDS-L-elsbetiae_contig782:5489..5612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 5490..5612 +
1691683872.539998-CDS-L-elsbetiae_contig782:5489..56121691683872.539998-CDS-L-elsbetiae_contig782:5489..5612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig782 5490..5612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig782.16770.1

>prot_L-elsbetiae_contig782.16770.1 ID=prot_L-elsbetiae_contig782.16770.1|Name=mRNA_L-elsbetiae_contig782.16770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
QELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFP
AEYPFKAPKVKFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTI
RQASRMLQEPHADNPLEADIARQLAEDKEAFTQTAKKWTLDFASP*
back to top

mRNA from alignment at L-elsbetiae_contig782:436..5612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig782.16770.1 ID=mRNA_L-elsbetiae_contig782.16770.1|Name=mRNA_L-elsbetiae_contig782.16770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5177bp|location=Sequence derived from alignment at L-elsbetiae_contig782:436..5612+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCTGGCGGAGCTCCGAAAGAACAAGCTAGAATGGTGCGACATCCA GCCGATGGATGACGACATCATGCGGTGGACTGCGATGCTAGTGGGGCCGG TGAGGAAGAAAGGGGGTTCTGAGAGTACATAGGTTAAGGGTTAAGGTTAG GGCTAACCCTGTTGGGACCAGTGAAGCAGAAAGGGGGGTTCTTAGAGTAC ACACGTAAGAGGGAGGCCCTACAGGTGGGATTTTTCTCCCGGTGTATTTG CTGATTACCTCTGGCAGAGTTGTGCACGGGAGGTTTGGAACCTTTCTGCT ACATATTTCAGAACCCTAGTGGGACCGGTGAGGCAGAGAAGGGCTGAGAG TACCGTAGGTGACACAAGATACCACTCCCCGAGGACAGATTTTCAAAGCT CGATGATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGAGGTGGGAT TGGAAAGGTGTAGTCGAGGGCTGTCCGAACATGTGTTGCTTGGTGCTGGC ACCTTCTTCGTTACGGAGTAGGTAATGGAGCTCTAAAGTTCGGTCCGGGG GGTGTGGTACCTTGTGTCACCTACGGTATAAACGTAAGAGGGCGACACTG CAGGCGGGCTGCTTCTTCTCCCCGGAGTATTTGGTGGTTGACCTCTGGCA GAGGTGTGCGGGGGAGGTTTTGAACCCTTCTGCTACGTATTTCAGGTGTT TTTCCTGCTCGGCCGCACCTATACTTCATCAGCACTACTTGACCGCATCA AATGTGTGTGTGTGTGTGCGTCCTTCCCATTTATTTTGGATACAGTTCCC CCAGTTGGAGACGTGTACTACACCTTGCGGTGTACTTAGCGGTACTACAC TTTGCAGTGCATTTGTCTGTACAAGTTCTGGAATAGTATTATATGGACAT GTGGGAGTAATGGGTGGCGAGATCGGAACAGTTTTTAATGTGAAGACAGC AACAACAACTGTATTGGGATGTTAGTTCACCACGGACTCCAGTCCAGTCT CCAATGTGCGGAGATTATTTACTTTTGATTTCCTGATTTCTTTTGAAAGG GGGCCAAGTCGGCACATGCGAACATGTTGAAGAGTTCTACATCTAGGAAA GTAGGTTTACATATTCCTTCTCTGATCTTAGGGTTAGGGTTCGGACGAAA AAGGGTACAGGTAGTATACACTCTTGTGAAGATGTCGGTTATTTCGGGAA AGGCGCTGCGTAGTTGTATCGATCGCATGTGGTTCGGTTTGCACACCTGT CTGTTGACCAATCCAATCCGTGTTGCACGAATTCTCTCAACGTGGCGGCG TATTATCCTACTCTTTGGTGCGTTTCAGGATGACACGCCTTTCAGCGGGG GCTGCTTTAACTTGGAGATCGAGTTCCCAGCGGAGTACCCGTTCAAGGCG CCCAAGGTGTGTTTAAGGACCGCCTTTTTTTTCACTCTATAGGCTTCCAG CAGCAGAGCCCCTGATTCTGAAAAAGTGGCTGTGGGGGAGTTTTCACTCT ATTTTCTGGATTAGTACCGTAATCATGCGAAGGTTTGCACCCCCGTGTCA GCATTTTTCTAAAGCGTATTCCTCCACCAACTCCAGGAGGGTGCGAACAC TAACTGATACCTCTCTGGAAAGCCCCCGACGAGACGTTTCGAAAACCACC CTTTTCGGCAGTGGTGCCCTCCTGGTTGTGGAGAAGTACGCTTATAGAAA AACGCTAACACGCGGGTGCGAACCTTCGCATGATTACGGCACCCCCCCCG CTGCACCCACAGCTCTTTTTGAGAATTGGGGGCTCTGTTGCAAAAAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGATAGGGGCTCCGTAGCCCTAGCCCA TACCCAACCCTAACCCAAAACCCCGACCCCCCTTGGCCGATTCCCATGCT TTATATCCCATATGTTTCTGCGTAAGCCAAAGGCTGCGAAGGCTACTAAT GTTTCAATGCCAAGCACCGGGTGTTTTCAATTGGTGCAATTTTTTTATCC TCGTTATTGTTAACCTTAACATATGGGTTGAAAGTCCACGTTGCCTTCGC CCGTGTTATTATGGGGGCGACACGGATCGAGCAAGGCTGTTTCTGCTGTC TGCATTTCATGTATACGACCTTGTGTAGAAAGCAAAGCAAGTGGTAACTG CCTCTGCCCGTGTAGGGTGGGGTGTGGGGGCCCCAGGGGAGATAAAACAC TGCTGTAGGGTGGGTGTGTCGCCACGGAACGAGAGTTCTGGCGAGTTGCG CCTCTCTCGAACACGGGTTTTAAGTGATGGGAGTACAAAAATGCGCCGCA GGCGGCCGGTCCTTCCCAAGATCGTAGTTAGCCTTCTCGGGATTTCACGT ACAGATTAGTTGAGCTATGTAACATCTATGGGATGAAGTATGGACACGGC TACAATAAGCGCGGGAGGTCGGTTCGGGGTTAGGGTTATAGGCCCACGGA ACCCTTGCATCTACCGTAATCATGCGAAGGTTCGCACCCCCGTGTTTCGA AAACCACCCTTTCGGCAGTGGTGCCCTCCTGGTTGTGGAGAAATACGCTA ATAGAAAGACGCTAATACGGGGGTGCGAACCTTCGCATGATAACGGTAGA GTGAGCTATGTAACATCTATGGGATGAAGTATGGAAATGCCTACAATAAG CGGGAGGTCGGTTCGGGGTTAGGGTTAGGCCTACGGAACCCTTGCATCTA CCGTAATCATGCGAAGGTTCGCACCCCCGTGTTAGCTCGCATGACTACGG TATTTTCCATGTATGTAGATACCTTAATTTCTCTGCGAAGGTGGTGATCA CGGGAACTCGCACGGCGGTGCCGGCGCGAAAAGCGGCGGTTGAGCCGGGT CGGGTCGGGTCGAGTCGAGTCGTCGCGATTTGGACGTTACATTTCACGAT AGATGCGGGGTAATTGATGCTGTCTGAAAGTAACCAAGCAGAGGGAGCGG CGTTGAGCCAACGACAAAATAAGTAAAAAAAAGAAAAAATCCCCAGCATC GCAATTTTGTGTGTTGAGGGGCCACGCGAAGGTGTGTACCTTGTACTTTT TCGGCCAAAAGAGGGTGCTTGATGGGATTTTTCGCTTGAACACAGAGTAG GACACCCACCCTGTTTTGGCCGGAAAAGTACAAGTGTGCAGTATCTTGTT TTGGCCGCTGCCCTGTTGTAGTTTTGCCAGGCTGTTTGTTGCTGCCGCTG TGTTCGCAAAGAGTTGAGGAGTATCGCGGAGGAGTATCGCACGAGGAAGG GAGGCAGATAGGTCCGCGCCAAGAGCCCATATTTGTTGTTGTTGTCTTCA CATTCAAAACCGTTAAAAAAAACATATATATATATTACTCGGAGTATATA CTTGGAAGTATATATTAATATACTTGTATATATTATATATATTTTAGTAC ACACACCTACGAGTCCATACTAGTCCAACACTGACCGCGATCGATTCCCG GGGCGTGTTCTATGTACATGTATCTTACGAAACAAAACAGGTGAAGTTCG TGACACGGATCTACCACCCCAATGTCAAGACGGACTCCGGGGAGATCTGC TCGGACATCTTGAACGAGAACTGGGGGCCGACCCTCAACGTCACGTACGT CCTCAACACCATCCGCCAGGCAAGCCGAGTGTCAAGCATCCTGTGTGTAA TGTAGTCTGCCATCGCCTTTGGAATACAAACAGCTCAGTGTGCTGGAAGT GGGAGTTCCGCAACCACTGCGTCACCCAAACCGGGTGTTTTCCCGATCGA TGCCCTGGCCTCTTTTTTTTTTTTTTGTTCACTTGGAGTTTTTGTCCAGC TCAAAATTGCAGTAATACAGGACCGTGTGTGTGAATTGCAAAAAAACAAG ACGTATTTCTGTTTTGTTTTGTACCCCGCATAGCGTGTAGAGGGGAGCGA GGGGCTCCACACTATTTGTCTTGGAATTTTATCGCGTGCTGACCCTTCGG GTCCAATTTTATTTTCGTATACCTTTTTTTTGGTAAAAGTCATCCTGTGG CCACGGGAATTGACCGCATCAGTGTTGGAATTGTACGGACATGGGGAGGT ACTGGGTGGAGAGATCGGAACGGTTTTTTAATGTGAAGACAACATACATA CACATAGGTATGTATGTAGGACCATCATACCGTACGTAACACAAGGTACC ACCCCCGCTGGACAGATTCTCGAAGCTCGATTACTCCGTAACGGAGAAGA TGCCAGCACCAAACGGCACATATTTTTGGACAGCCCTCGACTAGATCTTT CCAACGGCACCCCCTTTCGGTACTGGCACTCTCCTTGCTGTCGAGGAATC GAGCTTTCAAAATCTGTCCAGGGGGGGTGGTATCTTGTGTCATCTGCGGT ATTCGGTTGGTTCGAGGTCGGCACATGATACGGAAAGTACATTGAAAATC TGTCCAGGGGGGGGGGGGGGGGGGCTGGTATCTTGTGTCATATGCGGTAT TCGGTTGGTTCGGGGTCGACATGAGATGAAAAGCACACGGCTGCCCTCGG GGGTGTTCGTTTTGTCGGATGCCGAAGGGACTGAAGAGAGAGAGCGGCCG TGTGCACTCTTCCGACCATGGGCACCTTGGAAGACCACCATATCTTGGTT AATGCTCTACAGATTACGCTTGGTTTTCCCGTCCACGTATGCATGTATGT ACGTGCGGTAAACTTCCTGTAAATTTCACGGAATACTGACTGATCGTCTT GTTCGTGAATCCCCTAGAAACAGGCGGGTGTGGGAAGCCTCGGCTTCCGA TAGCTCTCTTTCCTCTACCTGGCGTGATAATCTGTTTTTTTCTAGCCTTT TTTATTTTATTTTCCGAGTGGTGTGCACCCTACACCTTATATTTTTTTTA GTGCGTGGTATGTACTCCTATTATGCTTCTACATACAAAGTGTATACTTT GCAGATGTTGCAGGAGCCGCACGCGGACGCCATGCCCCTTCCCGCTCGAT TTTGAAATTTCGAGAAATGTTCCACTGTTGATTGAACATGGCCGATGCAA TAATTACGCGCTACACAACGCGCCCATCCCCCCCCCCCCCCTAATTTTCC GCAGATGTTGCAGGAGCCGCACGCGGACAACCCGCTGGAGGCAGACATCG CGAGGCAGCTCGCGGAGGACAAGGAGGCCTTCACCCAGACGGCAAAAAAA TGGACCCTCGACTTCGCCAGCCCGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig782:436..5612+

>mRNA_L-elsbetiae_contig782.16770.1 ID=mRNA_L-elsbetiae_contig782.16770.1|Name=mRNA_L-elsbetiae_contig782.16770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig782:436..5612+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCTGGCGGAGCTCCGAAAGAACAAGCTAGAATGGTGCGACATCCA
GCCGATGGATGACGACATCATGCGGTGGACTGCGATGCTAGTGGGGCCGC
AGGAGCTGGCGGAGCTCCGAAAGAACAAGCTAGAATGGTGCGACATCCAG
CCGATGGATGACGACATCATGCGGTGGACTGCGATGCTAGTGGGGCCGGA
TGACACGCCTTTCAGCGGGGGCTGCTTTAACTTGGAGATCGAGTTCCCAG
CGGAGTACCCGTTCAAGGCGCCCAAGGATGACACGCCTTTCAGCGGGGGC
TGCTTTAACTTGGAGATCGAGTTCCCAGCGGAGTACCCGTTCAAGGCGCC
CAAGGTGAAGTTCGTGACACGGATCTACCACCCCAATGTCAAGACGGACT
CCGGGGAGATCTGCTCGGACATCTTGAACGAGAACTGGGGGCCGACCCTC
AACGTCACGTACGTCCTCAACACCATCCGCCAGGCAAGCCGAGTGAAGTT
CGTGACACGGATCTACCACCCCAATGTCAAGACGGACTCCGGGGAGATCT
GCTCGGACATCTTGAACGAGAACTGGGGGCCGACCCTCAACGTCACGTAC
GTCCTCAACACCATCCGCCAGGCAAGCCGAATGTTGCAGGAGCCGCACGC
GGACAACCCGCTGGAGGCAGACATCGCGAGGCAGCTCGCGGAGGACAAGG
AGGCCTTCACCCAGACGGCAAAAAAATGGACCCTCGACTTCGCCAGCCCG
TGAATGTTGCAGGAGCCGCACGCGGACAACCCGCTGGAGGCAGACATCGC
GAGGCAGCTCGCGGAGGACAAGGAGGCCTTCACCCAGACGGCAAAAAAAT
GGACCCTCGACTTCGCCAGCCCGTGA
back to top