mRNA_L-elsbetiae_contig7712.16655.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7712.16655.1
Unique NamemRNA_L-elsbetiae_contig7712.16655.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7712.16655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7712contigL-elsbetiae_contig7712:4168..5783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7712.16655.1prot_L-elsbetiae_contig7712.16655.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7712 4335..5783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.5764003-UTR-L-elsbetiae_contig7712:4167..43341622816856.5764003-UTR-L-elsbetiae_contig7712:4167..4334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7712 4168..4334 -
1691683865.1900935-UTR-L-elsbetiae_contig7712:4167..43341691683865.1900935-UTR-L-elsbetiae_contig7712:4167..4334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7712 4168..4334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.5880594-CDS-L-elsbetiae_contig7712:4334..45691622816856.5880594-CDS-L-elsbetiae_contig7712:4334..4569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7712 4335..4569 -
1691683865.1999435-CDS-L-elsbetiae_contig7712:4334..45691691683865.1999435-CDS-L-elsbetiae_contig7712:4334..4569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7712 4335..4569 -
1622816856.5987458-CDS-L-elsbetiae_contig7712:5736..57831622816856.5987458-CDS-L-elsbetiae_contig7712:5736..5783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7712 5737..5783 -
1691683865.2105443-CDS-L-elsbetiae_contig7712:5736..57831691683865.2105443-CDS-L-elsbetiae_contig7712:5736..5783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7712 5737..5783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7712.16655.1

>prot_L-elsbetiae_contig7712.16655.1 ID=prot_L-elsbetiae_contig7712.16655.1|Name=mRNA_L-elsbetiae_contig7712.16655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
RRPITSGCSSEPASGRSRNCARFHRGTSSAPSAAGKQYKTWEAAKSRGSS
ALLYCLVACMPRLRGRVGIRVVHPRETPKTAGGVDTALWCDRR*
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mRNA from alignment at L-elsbetiae_contig7712:4168..5783-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7712.16655.1 ID=mRNA_L-elsbetiae_contig7712.16655.1|Name=mRNA_L-elsbetiae_contig7712.16655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1616bp|location=Sequence derived from alignment at L-elsbetiae_contig7712:4168..5783- (Laminarionema elsbetiae ELsaHSoW15)
AGACGGCCGATCACCTCAGGGTGCAGCTCAGAGCCCGCGAGCGGCAGGTT
AGTATGTAGTGTATAGTGTGTGTCTCTCAACAAGAGAGCGGTTTGTTTTG
CGTCTCTCGTGAAGATCCTGCTGCCGCTGCTGCACCGCCGCTGCTGCTGC
TGCTGCCGCCGCCGCTGCCGCTTTTGCATGCGTAAAACTGGCACGCCTTT
TTACCTCTCTAGACTAACCTCCTAGCCCTCGAGACGTATGTAGCGAAAAA
GGGGGGGGCTCGTGTTGAACCCCGGCGTGAAAAGTGCTGAGCACGGCATT
CCAATCCCGAGCCGGAAGTGGAATCGGCGTCTCCAACCAACTGCTTGTGT
TCGATCACGGAAGGAAGCTGCCTGCGTTCGGGGGCAGGTTCGTCCGGAAG
AAAACACACATATGTATGCAACATCTACTCTCCTCCCATGAATATATAGT
CCGATACACAAGATGGCAACCACACTGTCTTGTTGAGCCTGTCATTAGTA
ACAGGCGAGATTGTATCACTAACAAATGCCCGGGATCTAGAAACAAACCC
CTCGACTAAAACGCCACTACTGTGTGTACCCTCCCAAAAGGCATACGGCT
GGAGTTGAGAGACAAAAATAAAAAAACTTGGATGGAATGCTTGAGGCCCC
CTCTTCTTGGTCTTGATGCAAACCGGCCCCACGGCGTGAAACGTGCCCCG
GAGTCTTGGCCAACCTCGCCGTACGAACTTCATACATGACGAACTACTAC
AGCAGTATTGTACGGAAAAGTTGGTTTGTATACCCTGCAGCACAAGTGAG
GGCGTGTCAATATCCATCTCTCTCCCCCTCACCTCGCGAAAAATGTACCG
TAGTAGGTGACATAAGATAAGACACCCCCTGGACCGATATTGAAAGCTTG
GTTACTCCGCAACGAATACGATTCTAACCACAAACGCAACATTTTCGGAA
AGCTCTCGACGAGATCTTTTCCAACGCCGCCCTCTTTTCGGTACTGACGC
TCTGCTTGCTGTGGAGTACTTGAGCTTTGAAAATTGGTCCAGGGTGTCTT
ATCTTATGTCACCTATGGTGGTATTCATGGCCCACCTGCCACAGCCACTT
ACGGTACCTTACATCCCGCTGAACTCCTTGTGAGCGGCTGATACATAACC
TCCACTCTCCCGCCCATCACTCTCCCACCCTCAATACCGTTCGGTACGGC
CACCCTCCATCAAGATCGAGGAACTGCGCGAGATTTCACAGGGGAACCTC
GTCCGCGCCCAGCGCCGCCGGGAAGCAGTACAAGACCTGGGAGGCAGCAA
AGAGCCGGGGGTCTAGTGCGCTCCTCTATTGTTTGGTGGCATGCATGCCA
AGACTGCGTGGGAGGGTGGGCATACGTGTTGTACACCCTCGCGAGACGCC
GAAAACAGCAGGAGGAGTAGACACGGCTCTATGGTGCGATCGTAGATGAT
GGAGCAAAGAATGATGTCTGAAGCACCGGGGAAGATTCTTTGACAAGCGC
GATAGTCTATATAGGTTCCAAAATCTCTCACTTTGGGCGCCAAGCTGCAC
TGTGTATGGCAAAGATCGGAGAGAACATGCCCCCGGGAGAGGTGGACGTT
AGTTCTTTTTGTCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7712:4168..5783-

>mRNA_L-elsbetiae_contig7712.16655.1 ID=mRNA_L-elsbetiae_contig7712.16655.1|Name=mRNA_L-elsbetiae_contig7712.16655.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig7712:4168..5783- (Laminarionema elsbetiae ELsaHSoW15)
AGACGGCCGATCACCTCAGGGTGCAGCTCAGAGCCCGCGAGCGGCAGAGA
CGGCCGATCACCTCAGGGTGCAGCTCAGAGCCCGCGAGCGGCAGATCGAG
GAACTGCGCGAGATTTCACAGGGGAACCTCGTCCGCGCCCAGCGCCGCCG
GGAAGCAGTACAAGACCTGGGAGGCAGCAAAGAGCCGGGGGTCTAGTGCG
CTCCTCTATTGTTTGGTGGCATGCATGCCAAGACTGCGTGGGAGGGTGGG
CATACGTGTTGTACACCCTCGCGAGACGCCGAAAACAGCAGGAGGAGTAG
ACACGGCTCTATGGTGCGATCGTAGATGAATCGAGGAACTGCGCGAGATT
TCACAGGGGAACCTCGTCCGCGCCCAGCGCCGCCGGGAAGCAGTACAAGA
CCTGGGAGGCAGCAAAGAGCCGGGGGTCTAGTGCGCTCCTCTATTGTTTG
GTGGCATGCATGCCAAGACTGCGTGGGAGGGTGGGCATACGTGTTGTACA
CCCTCGCGAGACGCCGAAAACAGCAGGAGGAGTAGACACGGCTCTATGGT
GCGATCGTAGATGA
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