mRNA_L-elsbetiae_contig7698.16630.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7698.16630.1
Unique NamemRNA_L-elsbetiae_contig7698.16630.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: D8LT77_ECTSI (Branched-chain-amino-acid aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT77_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.630e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:  425 ASAAVTSDPFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDWD 586
            +S A TSDPF+HLPG+EPSLLTV RTTTPREK+DKSTLVFG+TF+ HMLHLDWD
Sbjct:   71 SSPAATSDPFQHLPGIEPSLLTVERTTTPREKQDKSTLVFGQTFSDHMLHLDWD 124
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: D8LT74_ECTSI (Branched-chain-amino-acid aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT74_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.250e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  461 LPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDWDLDG 595
            LP L+ S+L+V RTTTPREK+DKS LVFG+TF+ HMLHLDWD +G
Sbjct:   33 LPVLQTSMLSVERTTTPREKQDKSKLVFGQTFSDHMLHLDWDSEG 77
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: W6Q1D6_PENRF (Branched-chain-amino-acid aminotransferase n=21 Tax=Penicillium TaxID=5073 RepID=W6Q1D6_PENRF)

HSP 1 Score: 57.0 bits (136), Expect = 3.520e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:  461 LPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            LPGL+PS LT+ +TTTP+E K+   LVFG+ FT HML ++W
Sbjct:   30 LPGLDPSKLTITKTTTPKELKESKDLVFGKYFTDHMLSVEW 70
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: A1CY02_NEOFI (Branched-chain-amino-acid aminotransferase n=17 Tax=Aspergillus TaxID=5052 RepID=A1CY02_NEOFI)

HSP 1 Score: 57.0 bits (136), Expect = 3.570e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 2 
Query:  440 TSDPFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            TS P   L GL+PS LTV +TTTP+E      LVFG+TFT HML ++W
Sbjct:   39 TSAPASQLAGLDPSKLTVTKTTTPKELLAPKDLVFGKTFTDHMLSIEW 86
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: V5FTW6_BYSSN (Branched-chain-amino-acid aminotransferase n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5FTW6_BYSSN)

HSP 1 Score: 56.2 bits (134), Expect = 6.540e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:  461 LPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            LPGL+PS LT+ +TTTP+E      LVFG+TFT HML ++W
Sbjct:   43 LPGLDPSKLTITKTTTPKEPLPPQELVFGKTFTDHMLSIEW 83
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: A0A0F4YJW5_TALEM (Branched-chain-amino-acid aminotransferase n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YJW5_TALEM)

HSP 1 Score: 56.2 bits (134), Expect = 6.690e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 2 
Query:  461 LPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            LPGL+PS LT+ RTTTP+E      LVFG+TFT HML ++W
Sbjct:   47 LPGLDPSKLTITRTTTPKELIPPEQLVFGKTFTDHMLTIEW 87
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: H6BV59_EXODN (Branched-chain-amino-acid aminotransferase n=2 Tax=Herpotrichiellaceae TaxID=43219 RepID=H6BV59_EXODN)

HSP 1 Score: 56.2 bits (134), Expect = 6.690e-6
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:  428 SAAVTSDPFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            S ++  DP + LPG++PS L V +T TP+E      LVFG TFT HML ++W
Sbjct:   53 SLSLDDDPAKSLPGIDPSKLEVTKTITPKELVPNKDLVFGRTFTDHMLSIEW 104
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: A0A2T3AY28_AMORE (Branched-chain-amino-acid aminotransferase n=1 Tax=Amorphotheca resinae ATCC 22711 TaxID=857342 RepID=A0A2T3AY28_AMORE)

HSP 1 Score: 53.9 bits (128), Expect = 4.000e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 2 
Query:  449 PFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            P  +L G++PS LT+ +TTTP    D   LVFG TFT HML L+W
Sbjct:   37 PSANLQGIDPSKLTITKTTTPASLVDPKQLVFGRTFTDHMLSLEW 81
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: A0A4S3JPK5_9EURO (Uncharacterized protein n=1 Tax=Aspergillus tanneri TaxID=1220188 RepID=A0A4S3JPK5_9EURO)

HSP 1 Score: 52.4 bits (124), Expect = 4.640e-5
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 2 
Query:  437 VTSDPFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            VT      L GL+P  LTV +TTTP+E      LVFG+TFT HML ++W
Sbjct:   40 VTPATTSQLAGLDPRKLTVTKTTTPKELVPSKDLVFGKTFTDHMLSIEW 88
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BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Match: A0A0D2GY18_9EURO (Branched-chain-amino-acid aminotransferase n=2 Tax=Fonsecaea multimorphosa TaxID=979981 RepID=A0A0D2GY18_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-5
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 2 
Query:  428 SAAVTSDPFRHLPGLEPSLLTVGRTTTPREKKDKSTLVFGETFTGHMLHLDW 583
            S A   D +  LPG++PS L V +T TP+E      LVFG TFT HML ++W
Sbjct:  301 SLAAEDDIYSKLPGIDPSKLEVTKTITPKELVPNKDLVFGRTFTDHMLSIEW 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7698.16630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LT77_ECTSI2.630e-2081.48Branched-chain-amino-acid aminotransferase n=2 Tax... [more]
D8LT74_ECTSI3.250e-1171.11Branched-chain-amino-acid aminotransferase n=2 Tax... [more]
W6Q1D6_PENRF3.520e-658.54Branched-chain-amino-acid aminotransferase n=21 Ta... [more]
A1CY02_NEOFI3.570e-656.25Branched-chain-amino-acid aminotransferase n=17 Ta... [more]
V5FTW6_BYSSN6.540e-658.54Branched-chain-amino-acid aminotransferase n=2 Tax... [more]
A0A0F4YJW5_TALEM6.690e-660.98Branched-chain-amino-acid aminotransferase n=1 Tax... [more]
H6BV59_EXODN6.690e-648.08Branched-chain-amino-acid aminotransferase n=2 Tax... [more]
A0A2T3AY28_AMORE4.000e-553.33Branched-chain-amino-acid aminotransferase n=1 Tax... [more]
A0A4S3JPK5_9EURO4.640e-551.02Uncharacterized protein n=1 Tax=Aspergillus tanner... [more]
A0A0D2GY18_9EURO4.650e-548.08Branched-chain-amino-acid aminotransferase n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7698contigL-elsbetiae_contig7698:3982..5422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog2880.D8LT77
Preferred nameBCAT1
KEGG rclassRC00001,RC00006,RC00036,RC00066
KEGG koko:K00036,ko:K00826
KEGG ReactionR00835,R01090,R01214,R02199,R02736,R10907,R10991
KEGG Pathwayko00030,ko00270,ko00280,ko00290,ko00480,ko00770,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko05230,map00030,map00270,map00280,map00290,map00480,map00770,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map05230
KEGG ModuleM00004,M00006,M00008,M00019,M00036,M00119,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000278,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0004084,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006550,GO:0006551,GO:0006573,GO:0006807,GO:0006810,GO:0007049,GO:0007275,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009082,GO:0009083,GO:0009097,GO:0009098,GO:0009099,GO:0009790,GO:0009791,GO:0009792,GO:0009987,GO:0010033,GO:0010817,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022402,GO:0030170,GO:0030879,GO:0031974,GO:0032501,GO:0032502,GO:0034097,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0046394,GO:0046395,GO:0046903,GO:0048037,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050878,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0052654,GO:0052655,GO:0052656,GO:0065007,GO:0065008,GO:0070013,GO:0070279,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1903047,GO:1990823,GO:1990830
EggNOG free text desc.branched-chain-amino-acid transaminase activity
EggNOG OGsCOG0115@1,KOG0975@2759
Ec32 ortholog descriptionbranched chain amino acid aminotransferase
Ec32 orthologEc-12_005530.1
EC1.1.1.363,1.1.1.49,2.6.1.42
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04147
Exons2
Model size597
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7698.16630.1prot_L-elsbetiae_contig7698.16630.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7698 3982..5043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.4644623-CDS-L-elsbetiae_contig7698:3981..41011622816854.4644623-CDS-L-elsbetiae_contig7698:3981..4101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 3982..4101 -
1691683863.556547-CDS-L-elsbetiae_contig7698:3981..41011691683863.556547-CDS-L-elsbetiae_contig7698:3981..4101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 3982..4101 -
1622816854.478572-CDS-L-elsbetiae_contig7698:4947..50431622816854.478572-CDS-L-elsbetiae_contig7698:4947..5043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 4948..5043 -
1691683863.5720963-CDS-L-elsbetiae_contig7698:4947..50431691683863.5720963-CDS-L-elsbetiae_contig7698:4947..5043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7698 4948..5043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.4927142-UTR-L-elsbetiae_contig7698:5043..54221622816854.4927142-UTR-L-elsbetiae_contig7698:5043..5422Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 5044..5422 -
1691683863.5829184-UTR-L-elsbetiae_contig7698:5043..54221691683863.5829184-UTR-L-elsbetiae_contig7698:5043..5422Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7698 5044..5422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7698.16630.1

>prot_L-elsbetiae_contig7698.16630.1 ID=prot_L-elsbetiae_contig7698.16630.1|Name=mRNA_L-elsbetiae_contig7698.16630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MRPAATAPGSAEVHPASAAVTSDPFRHLPGLEPSLLTVGRTTTPREKKDK
STLVFGETFTGHMLHLDWDLDG
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mRNA from alignment at L-elsbetiae_contig7698:3982..5422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7698.16630.1 ID=mRNA_L-elsbetiae_contig7698.16630.1|Name=mRNA_L-elsbetiae_contig7698.16630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1441bp|location=Sequence derived from alignment at L-elsbetiae_contig7698:3982..5422- (Laminarionema elsbetiae ELsaHSoW15)
CTCGAGATTGCACTCGATTTCAAAAGTTGGTTCAGCGCAAGTGGCCTCCT
TTGAATCTCTAGCATTCCCGTCCCCTATACGACGCAAAATTACCAGAGGT
AGACTAAGTTTTTCACAACGAACGCCTCCGCGTGGCAGAACTCTCGATTT
CCCAAAATAGTTGTCACGTCTCTGCGCCTTCCTTCTTGTGGCAGGTGGGC
TGGGATTCCACACCGTCCTTGTGGCTCGCATCGCCAGGGAAGCCTCGAGT
GGAGTCTCCACATCTGCAAACCTGATTTGACCGTCCTTTTCGCGAGCAGC
AGCAGAAGCGCAGCAGACCCAACTGGGCGCCACGTGTACTCGACCACTCT
CGGCGTGCGCGGCGGAGCATCCCCGACCGATGCGGCCGGCAGCCACTGCA
CCAGGGAGCGCTGAGGTGCACCCTGCGTCTGCAGCTGTGACGAGCGATCC
GTTCCGACACCTTCCAGGACTGGAGGTGGGTGGGTGTGTTTCGTTCACTC
GCGAAAGGGGGTGGTTGAATGTACATGCGGCGGCGAGTTATTGCCATGCG
ACGGCGGTAAAGATGTGCGAGAAGCCTCCCTCATAATCTTTGAGCGTTTG
CGTTGCTTTGGGTGGGCTGGCTGGGTGCAGGTTAGCATCAGACAGCTTGA
GGAGCGTGGAATGTGCGAGATGTGTGTTTCTTTTGCTCGGTTCAAAGCTT
GGTACCCAGGCGGTCCGCTGTGAGTAATTCGGTGTGCCGCTTGTATCGCG
GAAGGGTGGTCGGAAAGTGGTCACTCGTTGCCGTTACCGTCAACCGTTAG
CCGCAAGTGTGCGTTCTTTATCAGAACGGTGTGCTGCAATCGCTCTACGA
TCCCCTCGGAGCTTGGAAAATGACTGGCGTCAAACAAACCGTTGATGCTC
CCACGGAGGAGATCATATGACGGTCCTCAGTGAGAGGCGTTGCTGAGATG
GTGGCGCAGAGGAGAGAGTGTAGCCAAACGTGGGGGGATCGGTCCAAGTG
TGTGTGGGGGTGTTTTATGCAACAACCAAGCAGACTGCTGTAGGTTTCAA
TAACGTTGATTACCGACCGCCGCTTCCATCAATGACAAGACGACGCCCTC
TCGACCGCAGCACTACTCTCAGCCTGCTTCCCTCACCCCCGCCACACTTG
CTCTGGGGTTGGGCGTGCTTCCAACACGCCGAAGACCAAGCTGCCCATCG
TGCTCCGCTCTGGCTTGTCTGGAATCGCCAACCTTTCCCTCATCCTCGGC
ACGCCCCCGCCCCCGCCCGTCGACTGTTCCGTTTCATGATGTGATCCATT
CAATATTCCGCGCGGACACAGCCGTCGTTGCTGACGGTGGGGCGTACGAC
GACCCCGCGCGAGAAGAAGGACAAGTCGACGCTGGTGTTCGGCGAGACGT
TCACGGGCCACATGCTGCACCTCGACTGGGACCTCGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7698:3982..5422-

>mRNA_L-elsbetiae_contig7698.16630.1 ID=mRNA_L-elsbetiae_contig7698.16630.1|Name=mRNA_L-elsbetiae_contig7698.16630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig7698:3982..5422- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCCGGCAGCCACTGCACCAGGGAGCGCTGAGGTGCACCCTGCGTC
TGCAGCTGTGACGAGCGATCCGTTCCGACACCTTCCAGGACTGGAGATGC
GGCCGGCAGCCACTGCACCAGGGAGCGCTGAGGTGCACCCTGCGTCTGCA
GCTGTGACGAGCGATCCGTTCCGACACCTTCCAGGACTGGAGCCGTCGTT
GCTGACGGTGGGGCGTACGACGACCCCGCGCGAGAAGAAGGACAAGTCGA
CGCTGGTGTTCGGCGAGACGTTCACGGGCCACATGCTGCACCTCGACTGG
GACCTCGACGGGCCGTCGTTGCTGACGGTGGGGCGTACGACGACCCCGCG
CGAGAAGAAGGACAAGTCGACGCTGGTGTTCGGCGAGACGTTCACGGGCC
ACATGCTGCACCTCGACTGGGACCTCGACGGG
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