mRNA_L-elsbetiae_contig7657.16589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7657.16589.1
Unique NamemRNA_L-elsbetiae_contig7657.16589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: D8LG27_ECTSI (Voltage dependent anion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG27_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.370e-27
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:   10 DILSDDYSLKRTLKMKHTTPHGLTVTSKSEHNKGVNGALEAKFFHSKSGVSIDKAKV 180
            DILSDDY+LKRTLKMKHTTPHG+TVT+KSEH+KGVNGALEAKFFH+KSGVSIDKAK+
Sbjct:   63 DILSDDYNLKRTLKMKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKL 119
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: A0A6H5L9E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.780e-18
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   52 MKHTTPHGLTVTSKSEHNKGVNGALEAKFFHSKSGVSIDKAKV 180
            MKHTTPHG+TVT+KSEH+KGVNGALEAKFFH+KSGVSIDKAK+
Sbjct:    1 MKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKL 43
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: A0A835YRG3_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.710e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    7 ADILSDDYSLKRTLKMKHTTPHGLTVTSKSEHN--KGVNGALEAKFFHSKSGVSIDK 171
            +D+L+DDYSLK TLK+KHTTPH +  T+++EH    GV G L+ K+ H  SG S+DK
Sbjct:   15 SDLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDK 71
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: A0A835YZM2_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.100e-10
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   10 DILSDDYSLKRTLKMKHTTPHGLTVTSKSEHN-KGVNGALEAKFFHSKSGVSIDKAKV 180
            D+L+DD+SLKRT+K+KHTTPH +  T ++EH    V G ++ K+ H  SG ++DK  +
Sbjct:   16 DLLTDDFSLKRTVKVKHTTPHNVNFTIENEHKGSAVAGKVQLKYAHKPSGFALDKVTI 73
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: W7U0F0_9STRA (Voltage-dependent anion-selective channel n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0F0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.370e-9
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 PSADILSDDYSLKRTLKMKHTTPHGLTVTSKSEHNKGVNGALE------AKFFHSKSGVSIDKAKVR 183
            P+  IL+DDYSLKRTLK+KH TP G+ VT+++E   G +G  +       K+ H+ +G S+DK +++
Sbjct:   15 PADTILNDDYSLKRTLKVKHVTPDGVAVTTENELT-GKDGKFDLKAKISGKYKHAATGFSVDKLQLK 80
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BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Match: W7U446_9STRA (Voltage-dependent anion-selective channel protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U446_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.070e-7
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 SADILSDDYSLKRTLKMKHTTPHGLTVTSKSE-HNKGVNGALEAKFFHSKSGVSIDKAKVR 183
            +AD+L+DD++ KR LK+K  TP G+T TS+ E  +KGV   L AK+ H  SG+S+DK + +
Sbjct:   10 TADLLNDDFTYKRKLKIKLPTPDGVTWTSEGELSSKGVMAKLAAKYKHP-SGISLDKLEFK 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7657.16589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LG27_ECTSI1.370e-2789.47Voltage dependent anion channel n=1 Tax=Ectocarpus... [more]
A0A6H5L9E4_9PHAE2.780e-1888.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRG3_9STRA2.710e-1254.39Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
A0A835YZM2_9STRA5.100e-1046.55Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
W7U0F0_9STRA4.370e-943.28Voltage-dependent anion-selective channel n=2 Tax=... [more]
W7U446_9STRA9.070e-747.54Voltage-dependent anion-selective channel protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7657contigL-elsbetiae_contig7657:7738..7947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog2880.D8LG27
KEGG koko:K15040
KEGG TC1.B.8.1
KEGG Pathwayko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05166,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Eukaryotic porin
EggNOG OGs2D161@1,2SGUK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.8716483-CDS-L-elsbetiae_contig7657:7737..79471622816850.8716483-CDS-L-elsbetiae_contig7657:7737..7947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7657 7738..7947 +
1691683860.9671264-CDS-L-elsbetiae_contig7657:7737..79471691683860.9671264-CDS-L-elsbetiae_contig7657:7737..7947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7657 7738..7947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7657.16589.1prot_L-elsbetiae_contig7657.16589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7657 7738..7947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7657.16589.1

>prot_L-elsbetiae_contig7657.16589.1 ID=prot_L-elsbetiae_contig7657.16589.1|Name=mRNA_L-elsbetiae_contig7657.16589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
PSADILSDDYSLKRTLKMKHTTPHGLTVTSKSEHNKGVNGALEAKFFHSK
SGVSIDKAKVRVCVCACLF*
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mRNA from alignment at L-elsbetiae_contig7657:7738..7947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7657.16589.1 ID=mRNA_L-elsbetiae_contig7657.16589.1|Name=mRNA_L-elsbetiae_contig7657.16589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig7657:7738..7947+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTCTGCAGATATCCTGAGCGATGACTACAGCTTGAAGCGGACCCTGAA
GATGAAGCACACCACCCCGCACGGGCTGACCGTGACCTCCAAGAGCGAGC
ACAACAAGGGCGTCAACGGTGCCCTGGAGGCCAAGTTCTTCCACTCCAAG
TCGGGGGTCTCTATCGACAAGGCTAAGGTGCGCGTGTGTGTCTGTGCGTG
TCTGTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7657:7738..7947+

>mRNA_L-elsbetiae_contig7657.16589.1 ID=mRNA_L-elsbetiae_contig7657.16589.1|Name=mRNA_L-elsbetiae_contig7657.16589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig7657:7738..7947+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTCTGCAGATATCCTGAGCGATGACTACAGCTTGAAGCGGACCCTGAA
GATGAAGCACACCACCCCGCACGGGCTGACCGTGACCTCCAAGAGCGAGC
ACAACAAGGGCGTCAACGGTGCCCTGGAGGCCAAGTTCTTCCACTCCAAG
TCGGGGGTCTCTATCGACAAGGCTAAGGTGCGCGTGTGTGTCTGTGCGTG
TCTGTTTTAACCCTCTGCAGATATCCTGAGCGATGACTACAGCTTGAAGC
GGACCCTGAAGATGAAGCACACCACCCCGCACGGGCTGACCGTGACCTCC
AAGAGCGAGCACAACAAGGGCGTCAACGGTGCCCTGGAGGCCAAGTTCTT
CCACTCCAAGTCGGGGGTCTCTATCGACAAGGCTAAGGTGCGCGTGTGTG
TCTGTGCGTGTCTGTTTTAA
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