mRNA_L-elsbetiae_contig7601.16520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7601.16520.1
Unique NamemRNA_L-elsbetiae_contig7601.16520.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7601.16520.1 vs. uniprot
Match: D8LI98_ECTSI (Stc1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI98_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.200e-30
Identity = 105/136 (77.21%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:    1 KLREGKIAEDKLRCKDCTLKAATAEREKAASKSSKGGSSGAEGKGEPLSCSVCK-RDLPTASFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAE 405
            KLREGK+AEDK++CK+C  KAAT ERE+A S++SK  S+G EGK EPLSCS CK + LP +SFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         ARLKAASAECAREAE
Sbjct:   34 KLREGKLAEDKVKCKECVAKAATEERERA-SQNSKASSNGGEGKDEPLSCSACKQKSLPRSSFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAGAAARLKAASAECAREAE 168
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BLAST of mRNA_L-elsbetiae_contig7601.16520.1 vs. uniprot
Match: A0A6H5KHQ9_9PHAE (Stc1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 9.720e-24
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 KLREGKIAEDKLRCKDCTLKAATAEREKAASKSSKGGSSGAEGKGEPLSCSVCKRD-LPTASFTNTQARKPDASRKCRD 234
            KLREGK+AEDK++CK+C  KAAT ERE+A S++SK  S+  EGK EPLSCSVCK+  LP +SFTNTQARKP+ SRKCRD
Sbjct:   53 KLREGKLAEDKVKCKECVAKAATEERERA-SENSKASSNDGEGKDEPLSCSVCKQKRLPRSSFTNTQARKPETSRKCRD 130
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7601.16520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI98_ECTSI8.200e-3077.21Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHQ9_9PHAE9.720e-2469.62Stc1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7601contigL-elsbetiae_contig7601:2864..4159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D8LI98
Hectar predicted targeting categoryother localisation
EggNOG OGs2CIRJ@1,2S951@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003700.2
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7601.16520.1prot_L-elsbetiae_contig7601.16520.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7601 2864..4159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.066578-CDS-L-elsbetiae_contig7601:2863..29461622816845.066578-CDS-L-elsbetiae_contig7601:2863..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 2864..2946 +
1691683856.81456-CDS-L-elsbetiae_contig7601:2863..29461691683856.81456-CDS-L-elsbetiae_contig7601:2863..2946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 2864..2946 +
1622816845.0794492-CDS-L-elsbetiae_contig7601:3403..36931622816845.0794492-CDS-L-elsbetiae_contig7601:3403..3693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 3404..3693 +
1691683856.8252108-CDS-L-elsbetiae_contig7601:3403..36931691683856.8252108-CDS-L-elsbetiae_contig7601:3403..3693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 3404..3693 +
1622816845.0916152-CDS-L-elsbetiae_contig7601:4127..41591622816845.0916152-CDS-L-elsbetiae_contig7601:4127..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 4128..4159 +
1691683856.83379-CDS-L-elsbetiae_contig7601:4127..41591691683856.83379-CDS-L-elsbetiae_contig7601:4127..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7601 4128..4159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7601.16520.1

>prot_L-elsbetiae_contig7601.16520.1 ID=prot_L-elsbetiae_contig7601.16520.1|Name=mRNA_L-elsbetiae_contig7601.16520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
KLREGKIAEDKLRCKDCTLKAATAEREKAASKSSKGGSSGAEGKGEPLSC
SVCKRDLPTASFTNTQARKPDASRKCRDCSAAAEAAEAEALRVARAAKMS
EAQAASAAATKLPKGAAGAAARLKAASAECAREAE
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mRNA from alignment at L-elsbetiae_contig7601:2864..4159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7601.16520.1 ID=mRNA_L-elsbetiae_contig7601.16520.1|Name=mRNA_L-elsbetiae_contig7601.16520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig7601:2864..4159+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTGCGCGAGGGGAAGATTGCCGAGGACAAGCTTAGGTGCAAGGATTG
CACCTTGAAAGCCGCAACGGCAGAGCGCGAGAAGTGAGAGGACGGCGTTA
CAGCTCGCGCACACACCTCGGAGTATTGCCGTTAACCTGCAGCCAGTTGT
GTCTTGAAAGCGTTGAGAGTTTTGCCGACGTCATTATTTTGGCATAGACC
ATCGCTGTTCTGTAGCAGCACAATAATAGATTACCATCGCCTGCATTCGG
AGGCCTCAAAATTGTGCAGACGATAAAGGGGGGAAGGGTCTGTTCCATGA
CGAGCCTGTTCTACGGTCGTCGTTCTTCTAGCGAATCGATGCCAATGCAC
GAGGCCGAGGTAGGTAGTACAAACGGACGATTTTTGACGGCCTGCAATAA
TGGCACAACGCGCTCGCTTTCTTCTCGAAACCAACAGCAGCACACGCCTA
AATAGTGAAACTTTACCCCCCGCCAAGACTCATGGACGGGACGCTCGCCG
CCATCTCGCATCTATCGCCCTTCCAAAAACCGCCGAACAGGGCTGCATCC
AAAAGCAGCAAAGGCGGCAGCAGCGGTGCCGAGGGCAAAGGCGAGCCACT
CTCCTGCAGCGTCTGCAAACGAGACCTCCCCACGGCTAGCTTCACGAACA
CCCAGGCCCGCAAGCCCGACGCCTCAAGGAAATGCCGCGACTGCTCCGCG
GCCGCCGAGGCCGCCGAGGCCGAGGCCTTGAGGGTCGCGCGCGCGGCCAA
GATGAGCGAGGCGCAGGCGGCGTCCGCGGCCGCAACCAAGCTCCCCAAGG
GTGCCGCCGGAGCGGCGGCCCGCCTGAAAGGTAAGGTTTGGCTTCCGACA
AATAGTCTCCTGTTGCCGCTGATTTTTCTTTGTCATCACGTGGAATTGCG
TGGAAATGTCTTCCGCCCTGACCATGGACTAAAATCCCTTTGAAAAGCTT
CGCGCATTTTGATGCAGCTTCGGCGGGGGCAAGTTGCCCTTCGATGGGGG
CACACACAGGCTTGTAAAATGAAATTGATACTAGCTTTTTGTTTTGGAGG
GGGGACGAGATGGATCGATGCCCACCACACGTACTCTGTTTTGCAGACCG
AACATTTTATCTTCGCTCACATGTTGATCTCCGCGCGTGTTGAGGACAGC
CGCGCTTCCTCCACAAAATACCTTCTCTGCTGTACGTCAAAAGCCGAACG
ACAACGTCGTTGTTCTTGTTTTGTCTCCCCATGTAAATATCGCATGTTTG
GACGAAACAAAAAGCCGCTAGCGCCGAGTGCGCCAGAGAGGCAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7601:2864..4159+

>mRNA_L-elsbetiae_contig7601.16520.1 ID=mRNA_L-elsbetiae_contig7601.16520.1|Name=mRNA_L-elsbetiae_contig7601.16520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig7601:2864..4159+ (Laminarionema elsbetiae ELsaHSoW15)
AAACTGCGCGAGGGGAAGATTGCCGAGGACAAGCTTAGGTGCAAGGATTG
CACCTTGAAAGCCGCAACGGCAGAGCGCGAGAAAAACTGCGCGAGGGGAA
GATTGCCGAGGACAAGCTTAGGTGCAAGGATTGCACCTTGAAAGCCGCAA
CGGCAGAGCGCGAGAAGGCTGCATCCAAAAGCAGCAAAGGCGGCAGCAGC
GGTGCCGAGGGCAAAGGCGAGCCACTCTCCTGCAGCGTCTGCAAACGAGA
CCTCCCCACGGCTAGCTTCACGAACACCCAGGCCCGCAAGCCCGACGCCT
CAAGGAAATGCCGCGACTGCTCCGCGGCCGCCGAGGCCGCCGAGGCCGAG
GCCTTGAGGGTCGCGCGCGCGGCCAAGATGAGCGAGGCGCAGGCGGCGTC
CGCGGCCGCAACCAAGCTCCCCAAGGGTGCCGCCGGAGCGGCGGCCCGCC
TGAAAGGGCTGCATCCAAAAGCAGCAAAGGCGGCAGCAGCGGTGCCGAGG
GCAAAGGCGAGCCACTCTCCTGCAGCGTCTGCAAACGAGACCTCCCCACG
GCTAGCTTCACGAACACCCAGGCCCGCAAGCCCGACGCCTCAAGGAAATG
CCGCGACTGCTCCGCGGCCGCCGAGGCCGCCGAGGCCGAGGCCTTGAGGG
TCGCGCGCGCGGCCAAGATGAGCGAGGCGCAGGCGGCGTCCGCGGCCGCA
ACCAAGCTCCCCAAGGGTGCCGCCGGAGCGGCGGCCCGCCTGAAAGCCGC
TAGCGCCGAGTGCGCCAGAGAGGCAGAACCGCTAGCGCCGAGTGCGCCAG
AGAGGCAGAA
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