mRNA_L-elsbetiae_contig7562.16460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7562.16460.1
Unique NamemRNA_L-elsbetiae_contig7562.16460.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7562.16460.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.650e-18
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = -2 
Query:  159 DDREWHQEELVLLMEAAVAHPHQWDTVARRVAGGRTPSACMKRFLSLAIEEVVGEEGDGKVSAPALPA 362
            D+REW +EELVLLMEAAVA+P++WD VAR+VAGGRTP  CM+RFLSLA+E+VV  +G+ K+ A A+PA
Sbjct:  741 DEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPVECMQRFLSLAVEDVV--QGNEKLPA-AVPA 805
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7562.16460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE3.650e-1867.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7562contigL-elsbetiae_contig7562:1577..1944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.2993538-CDS-L-elsbetiae_contig7562:1576..19421622816840.2993538-CDS-L-elsbetiae_contig7562:1576..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7562 1577..1942 +
1691683853.494507-CDS-L-elsbetiae_contig7562:1576..19421691683853.494507-CDS-L-elsbetiae_contig7562:1576..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7562 1577..1942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7562.16460.1prot_L-elsbetiae_contig7562.16460.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7562 1577..1942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7562.16460.1

>prot_L-elsbetiae_contig7562.16460.1 ID=prot_L-elsbetiae_contig7562.16460.1|Name=mRNA_L-elsbetiae_contig7562.16460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
CCCCCCLTRPPKPSWSASAPLPLPTLTPVLPPVPASAVDPVPGEVPTVEE
AAFAGSAGAETFPSPSSPTTSSIARLRNRFMHAEGVRPPATRRATVSHWC
GCATAASISRTSSSWCHSRSSL
back to top

mRNA from alignment at L-elsbetiae_contig7562:1577..1944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7562.16460.1 ID=mRNA_L-elsbetiae_contig7562.16460.1|Name=mRNA_L-elsbetiae_contig7562.16460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=368bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:1577..1944+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTGCTGCTGCCTCACCAGGCCTCCCAAGCCCTCCTGGTCGGC
GTCAGCGCCCTTGCCGCTACCGACGCTCACACCAGTACTGCCGCCCGTGC
CCGCGTCCGCCGTCGACCCGGTGCCGGGAGAAGTCCCCACCGTGGAGGAA
GCCGCCTTCGCCGGCAGTGCCGGCGCTGAGACCTTCCCGTCCCCTTCCTC
CCCGACCACTTCCTCGATAGCGAGGCTGAGAAACCGCTTCATGCACGCCG
AGGGGGTGCGTCCCCCCGCGACCCGGCGCGCCACGGTGTCCCACTGGTGC
GGGTGCGCCACCGCCGCCTCCATCAGCAGGACCAGCTCCTCCTGGTGCCA
TTCTCGGTCGTCGTTGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7562:1577..1944+

>mRNA_L-elsbetiae_contig7562.16460.1 ID=mRNA_L-elsbetiae_contig7562.16460.1|Name=mRNA_L-elsbetiae_contig7562.16460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:1577..1944+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTGCTGCTGCCTCACCAGGCCTCCCAAGCCCTCCTGGTCGGC
GTCAGCGCCCTTGCCGCTACCGACGCTCACACCAGTACTGCCGCCCGTGC
CCGCGTCCGCCGTCGACCCGGTGCCGGGAGAAGTCCCCACCGTGGAGGAA
GCCGCCTTCGCCGGCAGTGCCGGCGCTGAGACCTTCCCGTCCCCTTCCTC
CCCGACCACTTCCTCGATAGCGAGGCTGAGAAACCGCTTCATGCACGCCG
AGGGGGTGCGTCCCCCCGCGACCCGGCGCGCCACGGTGTCCCACTGGTGC
GGGTGCGCCACCGCCGCCTCCATCAGCAGGACCAGCTCCTCCTGGTGCCA
TTCTCGGTCGTCGTTGTGCTGCTGCTGCTGCTGCCTCACCAGGCCTCCCA
AGCCCTCCTGGTCGGCGTCAGCGCCCTTGCCGCTACCGACGCTCACACCA
GTACTGCCGCCCGTGCCCGCGTCCGCCGTCGACCCGGTGCCGGGAGAAGT
CCCCACCGTGGAGGAAGCCGCCTTCGCCGGCAGTGCCGGCGCTGAGACCT
TCCCGTCCCCTTCCTCCCCGACCACTTCCTCGATAGCGAGGCTGAGAAAC
CGCTTCATGCACGCCGAGGGGGTGCGTCCCCCCGCGACCCGGCGCGCCAC
GGTGTCCCACTGGTGCGGGTGCGCCACCGCCGCCTCCATCAGCAGGACCA
GCTCCTCCTGGTGCCATTCTCGGTCGTCGTTG
back to top