mRNA_L-elsbetiae_contig7538.16439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7538.16439.1
Unique NamemRNA_L-elsbetiae_contig7538.16439.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 3.310e-74
Identity = 161/325 (49.54%), Postives = 188/325 (57.85%), Query Frame = 1 
Query:    1 GGQLVNGLASVTFCFAVAQGLAYPIGLDAAASLAMGIQ-------VVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAP---RHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQ-----GMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVSTPTLEAGADKKYGGQAAYQKYKRDTPALRFRL 930
            GG  V  L +V FC  +AQG+AYP+GL  AA+LAMGIQ       V A     L +   + D  G   F             Q  G   A   R DG   +  +     AP   R     A       RR G+ L     +  + S       RP   +     QA++     G+WVFFT +PMLVLH VDP+G MG++  AQD  GLAV  +GFALEVVADGQKR FK + ANAGKFIDVGLWSRCRHPNY+GEM +W GFFI CSRGVV GSGWL LVGP F TA+L  VSTP LE GADKKYGG AAY +YKR TP+L FRL
Sbjct:  238 GGGFVKDLGNVLFCGLLAQGVAYPLGLAGAAALAMGIQARPRVGAVGAGAERDLLRLHRYADLHGGDNF-------------QHVGLPAAFFRRGDGRNVRGRIPAGDGAPALDRRCSPQA------PRRHGSGLDLD-HKAWNLSVCEDTARRPRLQVQRGAGQASEVSRLLGIWVFFTAVPMLVLHKVDPRGSMGNIL-AQDAFGLAVWATGFALEVVADGQKRAFKADAANAGKFIDVGLWSRCRHPNYLGEMTLWAGFFIFCSRGVVAGSGWLALVGPLFGTAILTFVSTPMLEQGADKKYGGHAAYHEYKRTTPSLFFRL 541
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: D7FIU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU2_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.790e-71
Identity = 124/180 (68.89%), Postives = 144/180 (80.00%), Query Frame = 1 
Query:    1 GGQLVNGLASVTFCFAVAQGLAYPIGLDAAASLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKT-KALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKG 537
            GG     LA+V FC  +AQG+AYP+GLDAAA+LAMGIQ++AW+PSALAQ ETFYDFTGMLTF+AVT FS LGF+ +FF  E+A +  E      +  LS+A  APRHLVA A+VL WTTR LGTFLFARI+RDGHDSRFNGVRDRPLKFL+FW VQ   G+WVFFT LPMLVLH VDP+G
Sbjct:   12 GGGFGKDLANVLFCGLLAQGVAYPLGLDAAAALAMGIQILAWVPSALAQNETFYDFTGMLTFMAVTTFSTLGFLLRFFDGEMAAMFGEGSSPAMEHPLSIATAAPRHLVATALVLTWTTR-LGTFLFARIRRDGHDSRFNGVRDRPLKFLVFWFVQ---GIWVFFTSLPMLVLHKVDPRG 187
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A835YPX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX5_9STRA)

HSP 1 Score: 221 bits (562), Expect = 8.670e-63
Identity = 133/307 (43.32%), Postives = 171/307 (55.70%), Query Frame = 1 
Query:   10 LVNGLASVTFCFAV-AQGLAYPIGLDAAASLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGS-GWLTLVGPTFVTALLVLVSTPTLEAGADKKYGGQAAYQKYKRDTPALRF 924
            +V G      C A+  Q LAYP+GL+   +L +GIQ + ++PS   + E FYD TG  TFI   L +  GF R   G +     R+                  L+A  +V+ W  R LGT+LFAR+ R G DSRFNGVRD   + LLFW VQ   G+W   TP+ +L+L    P       R   D  G A  L G A+EV AD QK  ++  P N GKFIDVG+WS  RHPNYVGE+++W G + +C  G+ G   GW TLV P FV+ L V +S P +E  ADKK+GG A YQ YKR T AL +
Sbjct:   40 VVRGTIVQIICMAIFTQALAYPVGLNKPVALGLGIQWLVYLPSLALKTERFYDLTGSSTFI---LLATTGFARNGAGFDWHSNWRQ------------------LLATGMVVAWAAR-LGTYLFARVCRVGEDSRFNGVRDNAARALLFWTVQ---GVWTVVTPMAVLMLQAAPPVAE----RCWWDYAGGAAWLLGMAIEVAADAQKSAWQAVPTNWGKFIDVGMWSWSRHPNYVGEVLLWWGVWGVCYGGLRGQPWGWYTLVAPVFVSLLFVYISVPLIEEHADKKWGGLAEYQAYKRRTRALLY 317
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: D7FIU1_ECTSI (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU1_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 8.320e-57
Identity = 96/130 (73.85%), Postives = 106/130 (81.54%), Query Frame = 1 
Query:  541 MGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVSTPTLEAGADKKYGGQAAYQKYKRDTPALRFRL 930
            MG++  AQD  GLAV  +GFALEVVADGQKR FK + ANAGKFIDVGLWSRCRHPNY+GEM +W GFFI CSRGVV GSGWL L+GP F TA+L  VSTP LE GADKKYGG AAY +YKR TP+L FRL
Sbjct:    1 MGNIL-AQDAFGLAVWATGFALEVVADGQKRAFKADAANAGKFIDVGLWSRCRHPNYLGEMTLWAGFFIFCSRGVVAGSGWLALMGPLFGTAILTFVSTPMLEEGADKKYGGHAAYHEYKRTTPSLFFRL 129
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A849GG99_9GAMM (DUF1295 domain-containing protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A849GG99_9GAMM)

HSP 1 Score: 203 bits (517), Expect = 1.310e-56
Identity = 119/276 (43.12%), Postives = 161/276 (58.33%), Query Frame = 1 
Query:   94 SLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPAL 918
            +LA  I  +A++PSALAQ E FYD TG +T+I VT+ + L             LS  D +             R L+  A+V+VW+ R L TFLF RI RDG DSRF+ +++RPL+F + W +Q   G+WV  T    L + T    GG  +  GA  + G+ +  +G  +E+VAD QK  F+ +P N G+FI  GLW+  RHPNY GE+V+WTG  I+    V+ G  W TL+ P FVT LL  VS  P LE  ADK++GGQ  Y++YKR TP L
Sbjct:   45 ALAFIINWLAFVPSALAQTERFYDLTGGITYITVTVVAVL-------------LSGADDI-------------RALLVAAMVMVWSLR-LATFLFRRISRDGKDSRFDNIKNRPLRFFMAWTLQ---GLWVLLTAAAALAVIT----GGEREPLGAIGIAGIVIWAAGMLIEIVADRQKSNFRSDPDNKGRFISTGLWAWSRHPNYFGEIVLWTGMAIIAVP-VLQGWQWATLISPVFVTFLLTRVSGVPMLEEQADKRWGGQDDYEQYKRSTPVL 285
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A520WYX4_9GAMM (DUF1295 domain-containing protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A520WYX4_9GAMM)

HSP 1 Score: 202 bits (515), Expect = 2.460e-56
Identity = 121/275 (44.00%), Postives = 161/275 (58.55%), Query Frame = 1 
Query:   97 LAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPAL 918
            LA  I  +A+IPSA+AQ E +YD  G +T+I VT+ + L             LS E  L             R  +   +VLVW+ R L TFLF RI R G DSRF+ ++ RP+ FL+ W +Q   G+WV  T    L + T    GG  +  G    +G+A+ L+GF +EVVAD QK  FK +PAN GKFI+VGLW+  RHPNY GE+VIWTG  ++ +  V+ G  W TL+ P FV  LL  VS  P LE  AD+++GGQ  Y++YKR+TP L
Sbjct:   46 LAFAINWLAFIPSAIAQTEHYYDLVGGITYITVTIVAVL-------------LSTELDL-------------RSTIVAGMVLVWSLR-LATFLFRRISRAGKDSRFDTIKTRPVSFLMAWTIQ---GLWVLLTAAAALAVIT----GGNREPLGVIGYLGIAIWLAGFVIEVVADRQKSNFKADPANKGKFINVGLWAWSRHPNYFGEIVIWTGIAVI-ALPVLQGWQWATLISPVFVIFLLTKVSGVPMLEQKADERWGGQDDYEEYKRNTPVL 285
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A7Y1YX42_9GAMM (DUF1295 domain-containing protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1YX42_9GAMM)

HSP 1 Score: 202 bits (515), Expect = 2.850e-56
Identity = 118/276 (42.75%), Postives = 162/276 (58.70%), Query Frame = 1 
Query:   94 SLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPAL 918
            +LA G+  +A+IPSALAQ E +YD TG +T+I VT+ + L             LS E  L             R  +  A+V+ W+ R L TFLF RI RDG DSRF+ +++RPL+F + W +Q   G+WV  T    L + T    GG+ +  GA  + G+ +   G  +E+++D QK  FK +PAN G+FI+VGLW+  RHPNY GE+V+WTG  I+    V+ G  W TL+ P FVT LL  VS  P LE  AD+++GGQ  Y+ YKR TP L
Sbjct:   45 ALAFGVNWLAFIPSALAQTERYYDLTGGITYITVTVVAVL-------------LSGELDL-------------RAALVAAMVMFWSLR-LATFLFRRISRDGKDSRFDDIKNRPLRFFMAWTLQ---GLWVLLTAAAALAVIT----GGVREPLGAVGIAGIIIWSVGILIEIISDRQKSKFKGDPANKGRFINVGLWAWSRHPNYFGEIVLWTGMAIVAVP-VLQGWQWATLISPVFVTLLLTRVSGIPLLEEKADERWGGQEDYESYKRSTPVL 285
[Close]
BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A520XP78_9ACTN (DUF1295 domain-containing protein n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A520XP78_9ACTN)

HSP 1 Score: 198 bits (503), Expect = 1.300e-54
Identity = 112/275 (40.73%), Postives = 159/275 (57.82%), Query Frame = 1 
Query:   97 LAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPAL 918
            LA G+  +A++P+  A+ E +YD TG +T++ VTL +               ++  D L  +A+           +A A+V+ WT R LGTFLF RI+RDG D RF+ ++  PL+F   W +Q   G+WV  T    L + T   +  +G +      +G+AV L+GFA+E VAD QK VFK +PAN G+FI  GLW+  RHPNY GE+ +W G  I+    V+ G  W+ L+ P FVT LL+ VS  P LEA +DK++G + AYQ YK  TP L
Sbjct:   45 LAFGVNWIAFLPANAARTEKYYDLTGSITYLTVTLVA---------------VALSDNLDARAV-----------IAAAMVIAWTVR-LGTFLFRRIRRDGRDGRFDEIKTSPLRFFSAWTIQ---GLWVLLTAAAALAIITTTERRDLGWVA----YLGIAVWLAGFAVEAVADRQKSVFKQDPANDGRFITTGLWAWSRHPNYFGEITLWAGMAIMAIP-VLSGWQWVVLISPVFVTLLLMRVSGIPMLEARSDKRWGEEEAYQAYKAATPVL 284
[Close]
BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: A0A7Y1UXG8_9ACTN (DUF1295 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UXG8_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 4.880e-54
Identity = 115/277 (41.52%), Postives = 154/277 (55.60%), Query Frame = 1 
Query:   91 ASLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPAL 918
            A LA GI  +A+IP+  AQ E +YD TG LT+  VT               VA +   D L  +A+           +   +VL+WT R LG FLF RIQRDG D RF+ ++  PL+FL  W +Q   G+WV  T    L + T   +  +  L      VG+AV + GFA+E +AD QK VFK +PAN G+FI  GLW+  RHPNY GE+ +WTG  I+    ++ G  W  L+ P FVT LL  +S  P LE  AD+++G + AYQ+YK  TP L
Sbjct:   43 AFLAFGINWLAFIPANAAQTEKYYDLTGSLTYTTVT---------------VAAVLLSDDLDARAI-----------IVAVLVLIWTAR-LGAFLFRRIQRDGKDGRFDEIKVNPLRFLASWTIQ---GLWVLLTAAAALAIITTSDRKDLDALA----YVGIAVWVIGFAIEAIADRQKSVFKQDPANKGRFITTGLWAWSRHPNYFGEITLWTGIAIIAIP-ILSGWQWAVLISPIFVTLLLTRLSGLPMLEKRADERWGDEQAYQQYKARTPVL 284
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BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Match: UPI001AD08851 (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AD08851)

HSP 1 Score: 195 bits (496), Expect = 1.240e-53
Identity = 118/282 (41.84%), Postives = 159/282 (56.38%), Query Frame = 1 
Query:   88 AASLAMGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAELSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGHDSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDLRGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRHPNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVS-TPTLEAGADKKYGGQAAYQKYKRDTPALRFRL 930
            A +LA  IQ +A++P+ L Q E FYD TG LT+I++                           T A++   +   R ++  A+V+VW  R LG+FLF RIQ+ G D RF+  +   ++FL  W +Q   G+W+ FT    LV  T   +  +     A  +VGL V + GFA+EVVAD QK  F  NPAN GKFI  GLWSR RHPNY GE+ +W G  ++ +  V+ G  W+ L+ P FVT L+  VS  P LEA ADKK+GGQA Y+ YK+ TP L  RL
Sbjct:   42 AVALAFLIQWLAFLPAYLRQTEKFYDITGSLTYISII--------------------------TLAVIFSPRIDARSIILWALVVVWAVR-LGSFLFRRIQKAGKDDRFDKFKPSFIRFLNVWTIQ---GLWITFTAAAALVAITTTNRKELD----AFALVGLLVWIFGFAIEVVADSQKSRFSANPANKGKFIRTGLWSRSRHPNYFGEIALWVGVAVI-ALPVLQGWQWVALISPVFVTLLITRVSGVPMLEAKADKKWGGQAEYESYKKRTPVLIPRL 288
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7538.16439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH77_9PHAE3.310e-7449.54S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
D7FIU2_ECTSI2.790e-7168.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPX5_9STRA8.670e-6343.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FIU1_ECTSI8.320e-5773.85S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A849GG99_9GAMM1.310e-5643.12DUF1295 domain-containing protein n=1 Tax=Woeseiac... [more]
A0A520WYX4_9GAMM2.460e-5644.00DUF1295 domain-containing protein n=1 Tax=Chromati... [more]
A0A7Y1YX42_9GAMM2.850e-5642.75DUF1295 domain-containing protein n=1 Tax=Woeseiac... [more]
A0A520XP78_9ACTN1.300e-5440.73DUF1295 domain-containing protein n=3 Tax=Acidimic... [more]
A0A7Y1UXG8_9ACTN4.880e-5441.52DUF1295 domain-containing protein n=1 Tax=Acidimic... [more]
UPI001AD088511.240e-5341.84Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7538contigL-elsbetiae_contig7538:3514..9092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue1.4e-49
Seed eggNOG ortholog2880.D7FIU2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF1295
Ec32 orthologEc-20_002880.1
Exons9
Model size2035
Cds size834
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.974039-UTR-L-elsbetiae_contig7538:3513..46121622816837.974039-UTR-L-elsbetiae_contig7538:3513..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7538 3514..4612 -
1691683851.6312804-UTR-L-elsbetiae_contig7538:3513..46121691683851.6312804-UTR-L-elsbetiae_contig7538:3513..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7538 3514..4612 -
1622816838.0979555-UTR-L-elsbetiae_contig7538:8990..90921622816838.0979555-UTR-L-elsbetiae_contig7538:8990..9092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7538 8991..9092 -
1691683851.7585762-UTR-L-elsbetiae_contig7538:8990..90921691683851.7585762-UTR-L-elsbetiae_contig7538:8990..9092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7538 8991..9092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.9875064-CDS-L-elsbetiae_contig7538:4612..47381622816837.9875064-CDS-L-elsbetiae_contig7538:4612..4738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 4613..4738 -
1691683851.6454325-CDS-L-elsbetiae_contig7538:4612..47381691683851.6454325-CDS-L-elsbetiae_contig7538:4612..4738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 4613..4738 -
1622816837.9977016-CDS-L-elsbetiae_contig7538:5222..53091622816837.9977016-CDS-L-elsbetiae_contig7538:5222..5309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 5223..5309 -
1691683851.657661-CDS-L-elsbetiae_contig7538:5222..53091691683851.657661-CDS-L-elsbetiae_contig7538:5222..5309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 5223..5309 -
1622816838.0083346-CDS-L-elsbetiae_contig7538:6008..61221622816838.0083346-CDS-L-elsbetiae_contig7538:6008..6122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6009..6122 -
1691683851.6704438-CDS-L-elsbetiae_contig7538:6008..61221691683851.6704438-CDS-L-elsbetiae_contig7538:6008..6122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6009..6122 -
1622816838.0198941-CDS-L-elsbetiae_contig7538:6336..64101622816838.0198941-CDS-L-elsbetiae_contig7538:6336..6410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6337..6410 -
1691683851.6829324-CDS-L-elsbetiae_contig7538:6336..64101691683851.6829324-CDS-L-elsbetiae_contig7538:6336..6410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6337..6410 -
1622816838.0354342-CDS-L-elsbetiae_contig7538:6722..67881622816838.0354342-CDS-L-elsbetiae_contig7538:6722..6788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6723..6788 -
1691683851.699109-CDS-L-elsbetiae_contig7538:6722..67881691683851.699109-CDS-L-elsbetiae_contig7538:6722..6788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6723..6788 -
1622816838.0460155-CDS-L-elsbetiae_contig7538:6987..71001622816838.0460155-CDS-L-elsbetiae_contig7538:6987..7100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6988..7100 -
1691683851.7149527-CDS-L-elsbetiae_contig7538:6987..71001691683851.7149527-CDS-L-elsbetiae_contig7538:6987..7100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 6988..7100 -
1622816838.063296-CDS-L-elsbetiae_contig7538:7599..77831622816838.063296-CDS-L-elsbetiae_contig7538:7599..7783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 7600..7783 -
1691683851.7264297-CDS-L-elsbetiae_contig7538:7599..77831691683851.7264297-CDS-L-elsbetiae_contig7538:7599..7783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 7600..7783 -
1622816838.0767884-CDS-L-elsbetiae_contig7538:8200..82581622816838.0767884-CDS-L-elsbetiae_contig7538:8200..8258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 8201..8258 -
1691683851.735796-CDS-L-elsbetiae_contig7538:8200..82581691683851.735796-CDS-L-elsbetiae_contig7538:8200..8258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 8201..8258 -
1622816838.087904-CDS-L-elsbetiae_contig7538:8978..89901622816838.087904-CDS-L-elsbetiae_contig7538:8978..8990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 8979..8990 -
1691683851.7478278-CDS-L-elsbetiae_contig7538:8978..89901691683851.7478278-CDS-L-elsbetiae_contig7538:8978..8990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7538 8979..8990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7538.16439.1prot_L-elsbetiae_contig7538.16439.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7538 4613..8990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7538.16439.1

>prot_L-elsbetiae_contig7538.16439.1 ID=prot_L-elsbetiae_contig7538.16439.1|Name=mRNA_L-elsbetiae_contig7538.16439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
MGIQVVAWIPSALAQKETFYDFTGMLTFIAVTLFSALGFVRQFFGEEVAE
LSREDGLKTKALLSVAKQAPRHLVAMAVVLVWTTRRLGTFLFARIQRDGH
DSRFNGVRDRPLKFLLFWCVQATQGMWVFFTPLPMLVLHTVDPKGGMGDL
RGAQDMVGLAVCLSGFALEVVADGQKRVFKDNPANAGKFIDVGLWSRCRH
PNYVGEMVIWTGFFILCSRGVVGGSGWLTLVGPTFVTALLVLVSTPTLEA
GADKKYGGQAAYQKYKRDTPALRFRLL*
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mRNA from alignment at L-elsbetiae_contig7538:3514..9092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7538.16439.1 ID=mRNA_L-elsbetiae_contig7538.16439.1|Name=mRNA_L-elsbetiae_contig7538.16439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5579bp|location=Sequence derived from alignment at L-elsbetiae_contig7538:3514..9092- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCCAGCTCGTCAACGGCTTGGCGAGTGTTACCTTCTGCTTCGCCGT
GGCGCAAGGGCTCGCATACCCGATCGGGCTCGACGCTGCCGCGTCTCTAG
CAATGGGAATTCAGGTAACTCCTTGCGTGGAACTAGTCTTTACAAATCCT
GTCTTTCCTATATCCTGCTTTTACTCGATCGCGAGCATCAGCAGGCGCCC
TTTGGCGCCTACGTGCACTATCGACTTGCTCCGGGTCGTGGTTCTTCAAC
AGATGGTTAGCGCAAGACTCATGGACGGCTTCTCAGATGGCTTCCCACCA
ACCCGACTGATGGATCGTTTCTTCGCGTTCTAGTCCTCGATAAATAGCGG
TATTGTTGTCGAAGGCGCTGTTGGTGACCCGCCTTTCGCCTCAAGGCTTT
TCCCCACTGGCACTTGGGAAGGAAGAGGTATTGGATTTTGGGTGCGGTTT
CTCCCGTCGGATGCACTCCGATGTTGCGCATGGCAAGGGCGCACGTGCAA
TGTATCTCGCCCATTTGAGGGCGACGAGATAAACGAAAATGGTATGCACG
CATGAATAATACACAGCCATGCCTTGCCACGCCATGCCATGCCGCACAAC
AGGGCTGGGATCGCTCGTACTTAAACACATTCAGCAATGCCTGCGTGTGC
AGCAGTGCTGCGTGTGCTTTGCTGGGGGTGGTTTTTGCCGCCGCAGCGCC
TGTCCCACCCGCACCGATCAGAGTGCAGCAGCTGCTGTCTGCACCAAGCG
ATCGAGAAAAAGCCCGCCCGAAGCCTGCGTCCTTTTGTTGTGCTTTCTGG
TGCCCTTTTCCTTGTGGTATGGCCTCTTGAACAGGTTGTTGCGTGGATCC
CGTCCGCCTTGGCACAGAAGGAGACTTTTTACGACTTCACAGGTGCGCGG
CGAGATAAAGCGGAAACAACCTGAGCCGAGGAGTCGGGTCCCCGTGGATA
GCCTTTTATTCTTTTTCGGCGTTTACTTCTTCTGCGGCGGATAGCGCGTG
CTCGCTTGTTTGGTTGGCTGTTGGTTCCTAGAGCAGTAGTTCGGGGGTGG
GGTCCGCTCAGGTGTCCGTGTGCGTTGCTTATGCTTTTGTTTTCGGGTTC
TTTGCTGTGTGTGTGTGTGTGTGTGTGTGTCGCTCTTGAATTTGTCGGTG
TTCTCGGCTCGTCAAAACGTGGCCGTGTCTCTTACGATAGACTTTTAATG
TTGCTCTCCTCTGGCTCGAACTCGCCGCGACGTGTTGCCCCCATCAGTCA
ACTTTTCTGGCGTCCGTCCCACACCCCGGAACAACAACGTCTTCACACGT
CGACGGCAGGCATGCTGACCTTCATCGCGGTGACCCTGTTCAGCGCGCTC
GGCTTCGTGCGCCAGTTTTTTGGCGAAGAGGTGGCCGAACTGTCCCGGGA
GGATGGACTGAAGACGAAGGCCCTCCTCTCTGTTGCTAAGCAGGCCCCGC
GGCATCTCGTGGCCATGGCTGTGGTCTTGGTCTGGACCACACGGTGGGTC
TTTTTTTTCGCCCTTGCTGCGTGTCTGCGGGTACACGCGTGCTCGCCGCA
GCCGTGGTTTAGGCTCTTGCGTTTGTTCTTGCTTCGCGGTATGAAAAGCT
GTGGGGTATGTAGTGATGGTGCACTTCAGGAAGAGCCGTTTTTCGTTGTC
CAAGCAGCAGTGGTCGAGAATGTTGTGAAATCTGCTGCTGTAACTCTCTT
TTTGAGACCTTCTCGTGCGGCTCACATAGTATGGCTGCTGCGCAGCGACA
GGTGGTGTGAGGTTTGCCGCTGCTGACGCATGGGCGTTCAACCCGCGGTG
AACAAAATGGCCGGCTATTGCACCCGCCCCTCCGGCAGTTGCTGGTCTTT
CGAATTTGTTGAGCACGGCCGCTGGGCACGTCATCGATAGCCATCACGAT
CTGCTGGGGCCTACGTACAGTGTCCTCGACAGACATTCCTCGAAAGCTGT
TCTTCTGCTCCTTCCCTCCTTGCTTTCTTCCCTCCTTCCGAGCAGACTCG
GGACATTTTTGTTTGCGAGGATCCAAAGGGATGGTCACGACTCGAGGTTC
AACGGCGTCAGGGACCGCCCCCTCAAGTTTCTCCTCTTCTGGTGCGTGCA
GGCAAGTTTTGGGGCGCGCTGGGCTGCGCCCGCCCCTCAGCAGTCCTGCC
GTGTTCCAGGACTTGGCGGCAAGTACCCGAACCTCCCTGCGTGCGATGTT
CCTTCGTTCTTATCTCGTGTGGTGTTTCTTGGTTTCGATTCCTGCCTGAC
CCCAGCCCCCCTCGCTCTCCGCTATCCGCGCTTCGATTGTGTCTTGGTCG
GAAGCCCAGGGGATGTGGGTATTTTTCACCCCGCTGCCGATGCTAGTTCT
TCACACAGTCGACCCGAAAGGTGAGAGCCAGGATTCGGTGACTGCGCAAA
CATGCATGGGTAGGTCATGATATTTCGCGGCTGTGCCTAGTGCTGTGTAT
TTAGTGCACGTTTTTCGTTTTACCGCGGATGTGTATCTATGAAGTTTGTA
TGCTGTGCTGTGCCGGAATCGTTGAATACATGTAAAACCAACGCCGACAC
CTGATATATTTTTAATATTCGCCCCAGCGCCCCAGACGGTGTTGCCGGTA
GGTACATGGCGTTTTTCGATCACCGCCATCACCATCGCCACTGTCTATCG
CCAACAAATGACTGCAATTTCGTGTCGTCCAGGTGGCATGGGCGACCTGC
GTGGCGCCCAGGACATGGTCGGGTTGGCCGTATGCCTGTCTGGCTTTGCT
TTAGAGGTGCGGCCTAGGATGAGAGACATCGGAGCTGACTCTCACGCATT
GGTTGAGTTTTTCCCCCGTCGTATTCCGTGTTGGTCCACCAGCTGCTTTT
TGTGGAGTCCAGCAGCGTGAGTTCATGTGCTAATTTATGGTCGTGCATGG
GAGGAGAGAACGCCCCCCCCCCCCCCCTTAATACTGAAGAACCTTTACTT
CCTGCTGTGGCGACTTTCAGGTGGTAGCCGACGGCCAAAAACGAGTTTTC
AAAGACAACCCTGCAAACGCGGGCAAGTTCATTGATGTCGGCCTCTGGTC
CCGCTGCCGGCACCCAAACTACGTCGGAGAGATGGTGAGATCTATCTCGA
GGCGGCATGCATCCCACCGTTTTTTTTTCGCTTGTGTCGGCACACAGCTG
ATGACCCTGCTGTACTGCTGTAACTGCTGTTAGGTCTGTTGTTGCTACTT
TCTTGAGGCCATGCTTTTCACACAGAGCTTAATTGCGGGCCTTTGGCATC
ATCCCGCTTCCTTGGGGTCTTTTCGACGGCGTCCGGGGTGAGGCGAGGGT
CAGTTTTGGCTCCAACCAGCACCTCCCCCTGCTACATTGGTGCACAGCCT
CGGCGTCCGCCAAATGTCAGGCCCAAATCTTGGTTCTAGAACCGCGGTGC
ACGTATCACTACGTCGTACAAGTATGTTCGATGACTTTCGCGTCGTGCCG
CCCTTTTTTTTTTTTTTTTCCTTGTCTCAGTTTGTCTTGTGTGCACCAAA
TGCGGTAGATACCCGGTGTCCATCCCGGTAGTGAGCGGTCCTGCCCTCGT
CGAACTTTTTCCAATTCTGCTCTCTGTCGGACTGGAAGAAAAACATTTTG
ATGTTTGCTGCGCGACAGTTTGGAATCGCGTCTCAGGAATCTTGTGCTCC
GTGCGATAGGAATCTGGCTGTGGGTTCAAACATTGGCAATACATCTGTTT
GGGTTCGAAAGCCAGACGCACCTCATCTGATGTGCCTTTTTCATGTTTAT
CTGACAGCGCATCAAACGACTACCCGTCCGCAGGTGATTTGGACCGGCTT
CTTCATTTTGTGCAGCCGCGGGGTGGTGGGTGGCTCCGGGTGGCTGACTC
TTGTCGGGCCGACGTTCGTGGTGAGTTCTGTGTTTCATACTGCGATGCTT
GGTTGCAACCCACCAGAGTTGCAACAGCAACAAGATTGGTGTAGGTCGCG
ACTGCCGTTCAGTACCAACAGGAGCTACCCTGGCAAGTTTACGTCTGACT
GAGCCTTGGACTTGATTATTCTTGAAAGGGGATCGGAGAGGGGGTTGCGT
TAGGTTGAGGCGGATAAGGCTCGATTGACGTCCCGTCGTCAAGCGGCAGC
ATGAGAGAGAGCGGGGGGGAAAGGAAAGGGAGCCAGACTTTTGCGTGACC
TGTCTTACAACCTGTTGGCCTACTACCTTTTTCATCAACTTTTTCGGTTT
CGGGCGTCTCTTGCAAATAATGCGTTGGTGCTTCCCGAAGGTATCTCGCA
CTGACCCCTATGCGACCACCCCCCTCCCACCGACTCACTTGCGTGTGTAA
ATCTCCGCCCCACGAACCGTGCTATGTATACCCTGCTTATCCACCCGTGC
ACAGACGGCGTTACTGGTTCTCGTCAGCACCCCAACGCTGGAGGCAGGAG
CAGATAAGAAATACGGCGGGCAGGCGGCCTATCAGAAGTACAAGCGGGAC
ACACCGGCGTTGCGCTTCCGGTTGTTGTAGACAGCAAATGTGAAAACATG
GCCGATTGAGGCGGAGCCAAGCGAGTGTCTAGCTGCGTCTTTTGCGAACA
TAATGTAAATTGTGCGATGTGTTTTTCTCGAGCTTGCTGTGTCGTGGCTC
GAATCGGGGAAGACTGCCTCGTCACTGTCATGGTTTTACCCTCTGGCTAG
GGCACCATGTTTTCGCGACGAGGGTTGGTTGGAGTTGAGCAGGTTCCTGT
ACAGATGCGGCCGGCATTTGTGAAAGAACCTGGCAGTTAAAAACTTGAGG
GCTTGGATTTTTCAAAAATTAAAACATGGCCATGAAAATATGTGCTGGGT
TTGGAGGTGCACTAAGAACAAAAACCTACAGAGAGATGCGTAAAGCTCGA
ACTCAAGAAAATAATCGGGTCCTCAACACGGTGTGGCTGGAAGATAAGAA
CTTGGGTCTCAACGCCAGACCGACGAGCTAGCCCTTCTGGACGACGACGA
CGGCAGGGACTCGGACGACCCCGGACGACGAGACACGCGAAATGGGAATC
TGGGAAGGCTTTCGCATTCAAGAGTCTAAAAACCCGCTAAATACTCTTGA
CAGACTGCTTTCGGAACATGGAGTGCTCGTCAGGCTAGGCATGGGGTGGT
TTGGGGTGTTGATCACTCGGCAATCTCAGCAGCGCACCCGCCACCGTGAC
GATTACCGTGTGCATCTCGAGCTAGACCAGAGTAACGCGTAAGATGGAGT
TTCCACTAGAAAAGTACAGCGGAGATCCAGATGCGGTGATAGACTCAAGG
GTTGCTTTACAGGAGTATCTATGGCAGAGCAGGTGGATGGGGTCGGAGCC
GCATCCAAGTTGGGTGTACGTAGAGCGGGAAAGGGTGCGCACCGCCGACG
TGATCCTTGTGAACGAAGAAGGTTGAGAAGGTTGCTCCGGAGATTTGAGA
GCCACCAAAGAGCGTTGTGTCACATACATATGTATCTAGTGTGGACTATT
GTTGTAGACTAAGCATCTCTGGAGTATTTACGTATTTACTCGATCGTGAA
ATAAGGACAAGAACCCTCCCGTTTTTTGGCGGGTGTCTGCTCGAAATAAG
AACTTGGCGAATAAGAAAAGGTGCTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7538:3514..9092-

>mRNA_L-elsbetiae_contig7538.16439.1 ID=mRNA_L-elsbetiae_contig7538.16439.1|Name=mRNA_L-elsbetiae_contig7538.16439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig7538:3514..9092- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAATTCAGATGGGAATTCAGGTTGTTGCGTGGATCCCGTCCGCCTT
GGCACAGAAGGAGACTTTTTACGACTTCACAGGTTGTTGCGTGGATCCCG
TCCGCCTTGGCACAGAAGGAGACTTTTTACGACTTCACAGGCATGCTGAC
CTTCATCGCGGTGACCCTGTTCAGCGCGCTCGGCTTCGTGCGCCAGTTTT
TTGGCGAAGAGGTGGCCGAACTGTCCCGGGAGGATGGACTGAAGACGAAG
GCCCTCCTCTCTGTTGCTAAGCAGGCCCCGCGGCATCTCGTGGCCATGGC
TGTGGTCTTGGTCTGGACCACACGGCATGCTGACCTTCATCGCGGTGACC
CTGTTCAGCGCGCTCGGCTTCGTGCGCCAGTTTTTTGGCGAAGAGGTGGC
CGAACTGTCCCGGGAGGATGGACTGAAGACGAAGGCCCTCCTCTCTGTTG
CTAAGCAGGCCCCGCGGCATCTCGTGGCCATGGCTGTGGTCTTGGTCTGG
ACCACACGCAGACTCGGGACATTTTTGTTTGCGAGGATCCAAAGGGATGG
TCACGACTCGAGGTTCAACGGCGTCAGGGACCGCCCCCTCAAGTTTCTCC
TCTTCTGGTGCGTGCAGGCAACAGACTCGGGACATTTTTGTTTGCGAGGA
TCCAAAGGGATGGTCACGACTCGAGGTTCAACGGCGTCAGGGACCGCCCC
CTCAAGTTTCTCCTCTTCTGGTGCGTGCAGGCAACCCAGGGGATGTGGGT
ATTTTTCACCCCGCTGCCGATGCTAGTTCTTCACACAGTCGACCCGAAAG
CCCAGGGGATGTGGGTATTTTTCACCCCGCTGCCGATGCTAGTTCTTCAC
ACAGTCGACCCGAAAGGTGGCATGGGCGACCTGCGTGGCGCCCAGGACAT
GGTCGGGTTGGCCGTATGCCTGTCTGGCTTTGCTTTAGAGGTGGCATGGG
CGACCTGCGTGGCGCCCAGGACATGGTCGGGTTGGCCGTATGCCTGTCTG
GCTTTGCTTTAGAGGTGGTAGCCGACGGCCAAAAACGAGTTTTCAAAGAC
AACCCTGCAAACGCGGGCAAGTTCATTGATGTCGGCCTCTGGTCCCGCTG
CCGGCACCCAAACTACGTCGGAGAGATGGTGGTAGCCGACGGCCAAAAAC
GAGTTTTCAAAGACAACCCTGCAAACGCGGGCAAGTTCATTGATGTCGGC
CTCTGGTCCCGCTGCCGGCACCCAAACTACGTCGGAGAGATGGTGATTTG
GACCGGCTTCTTCATTTTGTGCAGCCGCGGGGTGGTGGGTGGCTCCGGGT
GGCTGACTCTTGTCGGGCCGACGTTCGTGGTGATTTGGACCGGCTTCTTC
ATTTTGTGCAGCCGCGGGGTGGTGGGTGGCTCCGGGTGGCTGACTCTTGT
CGGGCCGACGTTCGTGACGGCGTTACTGGTTCTCGTCAGCACCCCAACGC
TGGAGGCAGGAGCAGATAAGAAATACGGCGGGCAGGCGGCCTATCAGAAG
TACAAGCGGGACACACCGGCGTTGCGCTTCCGGTTGTTGTAGACGGCGTT
ACTGGTTCTCGTCAGCACCCCAACGCTGGAGGCAGGAGCAGATAAGAAAT
ACGGCGGGCAGGCGGCCTATCAGAAGTACAAGCGGGACACACCGGCGTTG
CGCTTCCGGTTGTTGTAG
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