mRNA_L-elsbetiae_contig753.16428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig753.16428.1
Unique NamemRNA_L-elsbetiae_contig753.16428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI)

HSP 1 Score: 588 bits (1516), Expect = 4.010e-202
Identity = 294/357 (82.35%), Postives = 311/357 (87.11%), Query Frame = 1 
Query:   43 DYDDEPVLKYQRMGADVGSLLAA----DAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYPV 1101
            DYDDEPVLKYQRMGADVG LL      +AGEKETVVRMAVHDTCLVFG A+G ILLTDYHGNE RR+RPH K VTDLSMD+TGDFLAS SEDGTVVVTGLQPG NGE   PEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGG+AGKLLLNKKGWLGHDE+VLHKGEGP+SAIAWRGPLVAWASDGGLKIMDVDKGK GERISYVDKPRSLVD KEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQR  GSLSP +Q                    +A  +NRRTSVPLTNPIGGGLP+AVIGAPTAAAP +LEAPERYTQI AVWQSDCL+CGLSPFDS+T++LLG+PV
Sbjct:   18 DYDDEPVLKYQRMGADVGKLLGPVEEEEAGEKETVVRMAVHDTCLVFGMASGMILLTDYHGNEARRLRPHTKAVTDLSMDITGDFLASSSEDGTVVVTGLQPGANGEHTAPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGSAGKLLLNKKGWLGHDEVVLHKGEGPLSAIAWRGPLVAWASDGGLKIMDVDKGKGGERISYVDKPRSLVDFKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRG-GSLSPMKQPHLSPQGGNG----------SAGDSNRRTSVPLTNPIGGGLPMAVIGAPTAAAPVALEAPERYTQIVAVWQSDCLICGLSPFDSDTVVLLGFPV 363
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A6H5KF08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF08_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 3.080e-157
Identity = 227/272 (83.46%), Postives = 237/272 (87.13%), Query Frame = 1 
Query:  286 LASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYPV 1101
            L S SEDGTVVVTGLQPG NGE   PEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDE+VLHKGEGPVS++AWRGPLVAWASDGGLKIMDVDKGK GERISYVDKPRSLVD KEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQR  GSLSP RQ                    +A  NNRRTSVPLTNPIGGGLP+AVIGAPTAAAP +LEAPERYTQI AVWQSDCL+CGLSPFDS+T++LLGYPV
Sbjct:   25 LHSSSEDGTVVVTGLQPGANGEHTAPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEVVLHKGEGPVSSVAWRGPLVAWASDGGLKIMDVDKGKGGERISYVDKPRSLVDFKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRG-GSLSPMRQPHHSPPGGNG----------SAGDNNRRTSVPLTNPIGGGLPIAVIGAPTAAAPVALEAPERYTQIVAVWQSDCLICGLSPFDSDTVVLLGYPV 285
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A8J9SCR4_9CHLO (Vacuolar protein sorting-associated protein 41 homolog n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SCR4_9CHLO)

HSP 1 Score: 197 bits (501), Expect = 1.280e-52
Identity = 100/238 (42.02%), Postives = 144/238 (60.50%), Query Frame = 1 
Query:   49 DDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQI 762
            ++EP LKYQR+G DV  LL  +A        ++V D  L  GT +G + + DY GNE +RI  HK PV ++  D   +++ASCS+DGTVV+ G            EV ++  K P+ +V LDP Y  RK + FV GG AG+LLL  KGWLG+ + +LH GEGP+  I W G L++WA+D G+K+ D       +RI+Y+++PRS   L+  + +CHM WE  + L +GW D V V ++
Sbjct:   33 EEEPRLKYQRLGCDVAELLGNNAA-----TCLSVSDKILALGTHSGAVHVLDYIGNEVKRIEAHKGPVNEICFDEAVEYIASCSDDGTVVIQGFYTD--------EVTTFKYKRPIKSVALDPRYGSRKTREFVTGGLAGQLLLVSKGWLGNKDTILHSGEGPIQEIKWSGSLISWANDLGVKVYDTT---IHQRIAYIERPRS--SLRHDKLQCHMFWEGDSLLHIGWADCVKVARM 252
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A1Y1Z482_9FUNG (Vacuolar protein sorting-associated protein 41 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z482_9FUNG)

HSP 1 Score: 196 bits (497), Expect = 2.100e-52
Identity = 93/237 (39.24%), Postives = 148/237 (62.45%), Query Frame = 1 
Query:   43 DYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMV 753
            D D+EP LKYQR+GADV  +       K+TV  M + +  +V GT  G + + D++GNE ++ RPH   +  LS+D   +++A+ S+DG V++TGL           E+ ++    P+  + LDP ++++  + FV+GG AG+L++N+KGWLGH + ++H GEGP+ A+ WRG L+AWA+D G+KI D     + +RI+Y+D+P      +    RCH+ W+T   LL+GW D+V V
Sbjct:   36 DDDEEPKLKYQRIGADVSEIFT-----KDTVSIMKISERFMVLGTHWGMVHIMDFNGNEVKKFRPHSATINSLSIDEHEEYVATASDDGKVLITGLYND--------EISAFNYMRPVKCIALDPEFSKKSARQFVSGGMAGQLIMNQKGWLGHKDTIIHGGEGPIYALEWRGDLIAWANDTGVKIYDTT---SNQRITYIDRPAQ--SPRADLYRCHLCWKTEKTLLIGWADSVKV 254
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: I0Z1S7_COCSC (ARM repeat-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1S7_COCSC)

HSP 1 Score: 196 bits (497), Expect = 2.840e-52
Identity = 101/241 (41.91%), Postives = 144/241 (59.75%), Query Frame = 1 
Query:   40 GDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQI 762
            GD ++EP LKYQR+G DV  LL ++A        + V D  L  GT  GT+ + DY GNE +RI  HK PV ++  D   +++ASCS+DG+VV+ G            E+ +   K P+ +V LDP Y  RK + FV GG AG+LLL   GWLG+ + +LH GEGP+  I W G L++WA+D G+K+ D       +RI+Y+++PRS   LK  + +CHM WE  + L +GW D V V ++
Sbjct:   30 GDTEEEPRLKYQRLGCDVAELLGSNAA-----TCLCVSDKILALGTHNGTVHVLDYIGNEVKRIEAHKGPVNEICFDEAVEYIASCSDDGSVVIQGFYT--------EEITTVKYKRPIKSVALDPRYGSRKTREFVTGGLAGQLLL---GWLGNKDTILHSGEGPIQEIKWSGTLISWANDLGVKVYDTT---IHQRIAYIERPRS--SLKHEKLQCHMFWEGESLLHIGWADCVKVARV 249
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A061SE29_9CHLO (Vacuolar protein sorting-associated protein 41 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SE29_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 1.580e-51
Identity = 122/356 (34.27%), Postives = 174/356 (48.88%), Query Frame = 1 
Query:   31 EGGGDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYP 1098
            EG  D +DEP LKY R+G+    LL+  A        M V D  +  GT  G + L DY+GNE RR   HK  V DLS D   +F+ASCS+DG+V V  L      ++     YS     P+  V LDP Y+ RKD+     G AG+L+LN +GWLG  +IVLHKGEGP+  + W G L+AWA+D G+K+ D        RI ++++PR +    +H   C + WE+ T L +GWG  V+V +I+  +    R   ++S +                                           P  V+G P  A   +L +P RY +I A + +D +V G++PF  +  IL   P
Sbjct:   14 EGVDDGEDEPRLKYVRLGSSCADLLSRAAAS-----CMQVEDKMIALGTQQGGVHLLDYNGNEIRRFDSHKAAVNDLSFDAKSEFIASCSDDGSVAVHSLF----SDETTRLQYSR----PIKTVALDPNYSSRKDRQVACAGLAGQLVLNSRGWLGPKDIVLHKGEGPIQRLRWSGSLIAWANDKGIKVYDT---AVHHRIGFIERPR-VQPPGDHTSTCSLFWESDTLLYIGWGSRVLVARIVHEDDG--RGGKAVSDD-------------------------------------------PWKVLGGPAKAV--ALGSPSRYVEIVADFGTDYIVAGVAPFGHDLAILAYVP 305
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A061RNR9_9CHLO (Vacuolar protein sorting-associated protein 41 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNR9_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 4.270e-51
Identity = 122/356 (34.27%), Postives = 174/356 (48.88%), Query Frame = 1 
Query:   31 EGGGDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYP 1098
            EG  D +DEP LKY R+G+    LL+  A        M V D  +  GT  G + L DY+GNE RR   HK  V DLS D   +F+ASCS+DG+V V  L      ++     YS     P+  V LDP Y+ RKD+     G AG+L+LN +GWLG  +IVLHKGEGP+  + W G L+AWA+D G+K+ D        RI ++++PR +    +H   C + WE+ T L +GWG  V+V +I+  +    R   ++S +                                           P  V+G P  A   +L +P RY +I A + +D +V G++PF  +  IL   P
Sbjct:   14 EGVDDGEDEPRLKYVRLGSSCADLLSRAAAS-----CMQVEDKMIALGTQQGGVHLLDYNGNEIRRFDSHKAAVNDLSFDAKSEFIASCSDDGSVAVHSLF----SDETTRLQYSR----PIKTVALDPNYSSRKDRQVACAGLAGQLVLNSRGWLGPKDIVLHKGEGPIQRLRWSGSLIAWANDKGIKVYDT---AVHHRIGFIERPR-VQPPGDHTSTCSLFWESDTLLYIGWGSRVLVARIVHEDDG--RGGKAVSDD-------------------------------------------PWKVLGGPAKAV--ALGSPSRYVEIVADFGTDYIVAGVAPFGHDLAILAYVP 305
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A061RHQ1_9CHLO (Vacuolar protein sorting-associated protein 41 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RHQ1_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 8.700e-51
Identity = 122/356 (34.27%), Postives = 174/356 (48.88%), Query Frame = 1 
Query:   31 EGGGDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYP 1098
            EG  D +DEP LKY R+G+    LL+  A        M V D  +  GT  G + L DY+GNE RR   HK  V DLS D   +F+ASCS+DG+V V  L      ++     YS     P+  V LDP Y+ RKD+     G AG+L+LN +GWLG  +IVLHKGEGP+  + W G L+AWA+D G+K+ D        RI ++++PR +    +H   C + WE+ T L +GWG  V+V +I+  +    R   ++S +                                           P  V+G P  A   +L +P RY +I A + +D +V G++PF  +  IL   P
Sbjct:   14 EGVDDGEDEPRLKYVRLGSSCADLLSRAAAS-----CMQVEDKMIALGTQQGGVHLLDYNGNEIRRFDSHKAAVNDLSFDAKSEFIASCSDDGSVAVHSLF----SDETTRLQYSR----PIKTVALDPNYSSRKDRQVACAGLAGQLVLNSRGWLGPKDIVLHKGEGPIQRLRWSGSLIAWANDKGIKVYDT---AVHHRIGFIERPR-VQPPGDHTSTCSLFWESDTLLYIGWGSRVLVARIVHEDDG--RGGKAVSDD-------------------------------------------PWKVLGGPAKAV--ALGSPSRYVEIVADFGTDYIVAGVAPFGHDLAILAYVP 305
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A061SEK5_9CHLO (Vacuolar protein sorting-associated protein 41 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEK5_9CHLO)

HSP 1 Score: 182 bits (461), Expect = 9.060e-51
Identity = 121/356 (33.99%), Postives = 173/356 (48.60%), Query Frame = 1 
Query:   31 EGGGDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRNTGSLSPERQXXXXXXXXXXXXXXXXXXXXNASVNNRRTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVCGLSPFDSETLILLGYP 1098
            EG  D +DEP LKY R+G+    LL+  A        M V D  +   T  G + L DY+GNE RR   HK  V DLS D   +F+ASCS+DG+V V  L      ++     YS     P+  V LDP Y+ RKD+     G AG+L+LN +GWLG  +IVLHKGEGP+  + W G L+AWA+D G+K+ D        RI ++++PR +    +H   C + WE+ T L +GWG  V+V +I+  +    R   ++S +                                           P  V+G P  A   +L +P RY +I A + +D +V G++PF  +  IL   P
Sbjct:   14 EGVDDGEDEPRLKYVRLGSSCADLLSRAAAS-----CMQVEDKMIA--TQQGGVHLLDYNGNEIRRFDSHKAAVNDLSFDAKSEFIASCSDDGSVAVHSLF----SDETTRLQYSR----PIKTVALDPNYSSRKDRQVACAGLAGQLVLNSRGWLGPKDIVLHKGEGPIQRLRWSGSLIAWANDKGIKVYDT---AVHHRIGFIERPR-VQPPGDHTSTCSLFWESDTLLYIGWGSRVLVARIVHEDDG--RGGKAVSDD-------------------------------------------PWKVLGGPAKAV--ALGSPSRYVEIVADFGTDYIVAGVAPFGHDLAILAYVP 303
[Close]
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Match: A0A7S4KUA9_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUA9_GUITH)

HSP 1 Score: 191 bits (484), Expect = 4.040e-50
Identity = 98/238 (41.18%), Postives = 142/238 (59.66%), Query Frame = 1 
Query:   58 PVLKYQRMGADVGSLLAADAGEKETVVRMAVHDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCSEDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFVAGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKIMDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVMVLQILVR 771
            P LKYQR+G  V  +L     ++E+   + +HD  L  GTA G I + D+ GNE RR   H   V DLS+D  G+F+ASCS+DGTVV+ GL           E  S+  + P+ ++ LD  ++R+ ++ F +GG AG+LLLN+KGW    + V+H GEGPV +IAW   L+AW +D G+KI D       +RI+Y+D+P+    L+    +CH+ WET   LL+GW D V + Q+  R
Sbjct: 1031 PRLKYQRLGNSVSDIL-----KRESASAVRLHDKFLALGTAEGWIYILDFDGNEIRRFGAHTAVVNDLSIDRAGEFIASCSDDGTVVINGLFSA--------ECESFTYQRPVKSLALDAKFSRKGNRHFASGGLAGQLLLNEKGWFTSKDKVIHAGEGPVYSIAWADSLIAWTNDVGVKIFD---NATNQRITYIDRPKG--SLRPDAMKCHLCWETNNTLLIGWADFVKIAQVKER 1250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig753.16428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS06_ECTSI4.010e-20282.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF08_9PHAE3.080e-15783.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9SCR4_9CHLO1.280e-5242.02Vacuolar protein sorting-associated protein 41 hom... [more]
A0A1Y1Z482_9FUNG2.100e-5239.24Vacuolar protein sorting-associated protein 41 n=1... [more]
I0Z1S7_COCSC2.840e-5241.91ARM repeat-containing protein n=1 Tax=Coccomyxa su... [more]
A0A061SE29_9CHLO1.580e-5134.27Vacuolar protein sorting-associated protein 41 n=1... [more]
A0A061RNR9_9CHLO4.270e-5134.27Vacuolar protein sorting-associated protein 41 n=2... [more]
A0A061RHQ1_9CHLO8.700e-5134.27Vacuolar protein sorting-associated protein 41 (Fr... [more]
A0A061SEK5_9CHLO9.060e-5133.99Vacuolar protein sorting-associated protein 41 (Fr... [more]
A0A7S4KUA9_GUITH4.040e-5041.18Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig753contigL-elsbetiae_contig753:21389..28178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score594.3
Seed ortholog evalue3.7e-167
Seed eggNOG ortholog2880.D7FS06
Preferred nameVPS41
KEGG koko:K20184
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2066@1,KOG2066@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons7
Model size1101
Cds size1101
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.1639614-CDS-L-elsbetiae_contig753:21388..215531622816837.1639614-CDS-L-elsbetiae_contig753:21388..21553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 21389..21553 +
1691683851.027847-CDS-L-elsbetiae_contig753:21388..215531691683851.027847-CDS-L-elsbetiae_contig753:21388..21553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 21389..21553 +
1622816837.1785226-CDS-L-elsbetiae_contig753:22987..231151622816837.1785226-CDS-L-elsbetiae_contig753:22987..23115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 22988..23115 +
1691683851.0430384-CDS-L-elsbetiae_contig753:22987..231151691683851.0430384-CDS-L-elsbetiae_contig753:22987..23115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 22988..23115 +
1622816837.1893425-CDS-L-elsbetiae_contig753:24108..242461622816837.1893425-CDS-L-elsbetiae_contig753:24108..24246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 24109..24246 +
1691683851.056574-CDS-L-elsbetiae_contig753:24108..242461691683851.056574-CDS-L-elsbetiae_contig753:24108..24246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 24109..24246 +
1622816837.201065-CDS-L-elsbetiae_contig753:24991..251171622816837.201065-CDS-L-elsbetiae_contig753:24991..25117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 24992..25117 +
1691683851.0672557-CDS-L-elsbetiae_contig753:24991..251171691683851.0672557-CDS-L-elsbetiae_contig753:24991..25117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 24992..25117 +
1622816837.2142916-CDS-L-elsbetiae_contig753:25844..259371622816837.2142916-CDS-L-elsbetiae_contig753:25844..25937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 25845..25937 +
1691683851.077304-CDS-L-elsbetiae_contig753:25844..259371691683851.077304-CDS-L-elsbetiae_contig753:25844..25937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 25845..25937 +
1622816837.228343-CDS-L-elsbetiae_contig753:26343..264101622816837.228343-CDS-L-elsbetiae_contig753:26343..26410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 26344..26410 +
1691683851.0893207-CDS-L-elsbetiae_contig753:26343..264101691683851.0893207-CDS-L-elsbetiae_contig753:26343..26410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 26344..26410 +
1622816837.2429404-CDS-L-elsbetiae_contig753:27794..281781622816837.2429404-CDS-L-elsbetiae_contig753:27794..28178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 27795..28178 +
1691683851.1032493-CDS-L-elsbetiae_contig753:27794..281781691683851.1032493-CDS-L-elsbetiae_contig753:27794..28178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 27795..28178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig753.16428.1prot_L-elsbetiae_contig753.16428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig753 21389..28178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig753.16428.1

>prot_L-elsbetiae_contig753.16428.1 ID=prot_L-elsbetiae_contig753.16428.1|Name=mRNA_L-elsbetiae_contig753.16428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp
MDGAVSSGAGEGGGDYDDEPVLKYQRMGADVGSLLAADAGEKETVVRMAV
HDTCLVFGTATGTILLTDYHGNETRRIRPHKKPVTDLSMDVTGDFLASCS
EDGTVVVTGLQPGPNGEQPPPEVYSYGAKWPMLAVKLDPLYARRKDKTFV
AGGAAGKLLLNKKGWLGHDEIVLHKGEGPVSAIAWRGPLVAWASDGGLKI
MDVDKGKAGERISYVDKPRSLVDLKEHECRCHMLWETPTRLLVGWGDTVM
VLQILVREPKYQRNTGSLSPERQQQQQSPPAGGGGGGGGGYGGNASVNNR
RTSVPLTNPIGGGLPLAVIGAPTAAAPASLEAPERYTQIGAVWQSDCLVC
GLSPFDSETLILLGYPV
back to top

mRNA from alignment at L-elsbetiae_contig753:21389..28178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig753.16428.1 ID=mRNA_L-elsbetiae_contig753.16428.1|Name=mRNA_L-elsbetiae_contig753.16428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6790bp|location=Sequence derived from alignment at L-elsbetiae_contig753:21389..28178+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGAGCGGTCAGCAGCGGGGCGGGGGAGGGGGGAGGAGACTATGA
CGATGAGCCAGTGCTCAAGTATCAGAGGATGGGAGCGGACGTTGGCAGCC
TCCTCGCTGCCGATGCCGGCGAAAAGGAGACCGTCGTGAGGATGGCGGTC
CACGATACCTGCTTGGTGGGTTAGACTCTATCTAGACTATACATTGTAGT
GATTTGGAGCTCAGGCATCCAGATGTAGCATGGCGGCGCCCGCCTGTTTT
GTTGCTGTTTTGCGTTCGTCAAAAATGCATGATGTCATGGTCTTGATTGA
AGCGAGCTTCGTTCGTCTTGTGGACACATGCATGCACCTTATACGACACA
AGATAACACACCCCCTGGACCGCTTTTTAAAGCTCGATTAATCCGCAACG
AGTATGATTCTAATACCAAACGGCATGTTTTCGGACAGCTCTTGATAAGG
TCTCTCCAACGCCACCCTTTTCGGGAATGGCAATCTTCTCGCTGTGTGAG
TACTTGGGCTTTGAAAATCGGTCCAGGGGGTGTGTTATCTTGTGTCGTAC
TTCTGTACTATACGGTACATATGTGTGCCTTCGGAGTACTACTTGTACTG
CTGCTGTTAGACGTATCGTATGTACGGCAGAGGAGAGCAAGCGTTGAATG
GGTACTTGCGAAAGCAAAACAGCCTTGCCCCCCTTGCACCTATTTTTCCC
TGTTCACCTTTTTGGGAATGGCGACGGGCTTCCCATGCCCGCGCAAGGTA
CCTGCCAACCTGGTTTGTACGGTAGATAAACACACGCCCCACCCTTCCGT
GGAGATTTTCGACTCTCTCGAGAACGCGAACCAAGCCATGGTTCCGTTTT
TTACGCCTCAAACCGCAACTGCAATCGTTCGAGAACCCTCAGGTTCGGAA
TCGATTCCTCGCGTGACAACAAGCTGCGTACCTAGCTTGTTGTAGCATGT
GCGGCACTGCTATGTAGATGGATGCCCACAAGCGCTGCCGGGGCTTGTAG
CTCTTCTTTTGCTGTGTTCGCATGCTATAGCTTCATGCATTGATGCAATT
GATGCTGCTGCGCACTGCAGGTAGTGCGGGTGAAACCAGCTGCCATCCCG
TCCGCGAACAGCTTGGAAAGCAGCAGAGCACCAACATCCAGCGTGTAGGG
CGTAGGTGATTGTTCACTACACCGAGGGCTCTGTCAGTGGTAACTTCAAC
ACTCGACCAACCACCTCTATTAGTCAAGATATCTGCCAGCTATGTTGTAG
TGTCGGTGGCTTCCCTTCGTGAAATTTAAACGTAATGCAATGGCGGGGTT
GCTCTGGTACGTGAAGCTTCTTTAGTCGAGAACTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCTCTCTCCCTCTCCCTCTCCCTCCCA
CTCTACATACGTTTGTGAACGTCCACTCTTTCCGGCTTGAGTACCATAGT
CTTCCACCAGGCGCTTCAGTCCTCCGACACATGCTGCACTCACCAAATGG
CTCCCGCGCCTCCTCCACCTCCCACGCCCATCCGTTGAACCCCTCCTTCG
AACCAACCCGCCGCCGGCGGATTGACGCATTCATCCATCCATCTGCCAGG
TTTTCGGGACTGCGACAGGGACTATCCTGCTGACGGACTACCACGGCAAC
GAAACTCGACGAATACGGCCGCACAAGAAACCCGTGACCGATCTAAGCAT
GGACGTCACCGGCGACTTCTTGGCCAGGCAAGTAGCCTTTTCCCGTCACG
GCTTTCTTTCACTTGGCTTGACACTGGGCCTGGCTTGGCTTGGCTTGGCT
TGGCTTGGCTCGGCTTGACTTGACTTTCTTTAGACTTAACTTTATTTGAC
TTTATTTGACTTGACTTGACTTGGCTTGACTGGGCTTGGCTTGGCTTGGC
TTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGC
TTGACTTGACTTTCTTTGACTTAACTTTCTTTGACTTTATTTGACTTGAC
TTGACTTGGCTTGACTGGGCTTGACTTGGCTTGGCTTGGCTTGGCTTGAC
TTGACTTGGCTTGGCTTGGCTTGGCTCGGCTTGACTTGACTCTCTTTGAC
TTAACTTTATTTGGCTTGGCTTGGCTTGGCTTGACTTGGCTTGACTTGGC
TTGACTGGACTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTCGGC
TTGACTTGACTTTCTTTGACTTAACTTGGCTTGGCTTGGCTTGACTTGGC
TTGACTGGACTTGGCTTCGCTTGGCTTGGCTTGGCTTGACTTGGTTTGAC
TTAATTTGACTTGACTTGACTTGACTTGACTTGACTTGACTTGACTGGCG
GGGCGGGAGGGTAGCGGGCGCAGCACGGGGGCGGCGTGTTTTGCCTCGCC
TCGCCTGCTCTCTCATGTACATATGTATGTATGCAGCTTTTGTGGGTGTG
TCGGTCGCCTGTTCTTGTCCCGCGGCTTGAACAAGCAATGTGCGCGTTTG
AGATCGACACAAAGGGTGCGTTTCACGGTTTGGAGGATATGTATGTAACC
CTCTGGCCGAGACTTTGCTTTTCTATCTGATCGCGGGGTCTTCGTGTGTG
TGTGTGTGTGTGTATGTATGTGTGCGTGCGTGCGTGCGTGAGTGAGTGTG
CGCGGTTTCTCCCGTGTTTTCCCTTCTTATTTTTCTTCCTGTGTTGCTGT
CTTATACTCCTTGTATTTAGCTGCTCGGAAGACGGCACAGTGGTCGTTAC
GGGGTTGCAGCCGGGACCCAACGGCGAGCAACCCCCCCCGGAGGTGTACA
GCTACGGTGCCAAGTGGCCGATGCTGGCCGTCAAGCTGGACCCCCTCTAC
GCCAGAAGGTGTGGTGTTGTAGTACGAAATAGTCTATCTTCACTCGTGCT
CGATGTTTACAGTACGGTACGATGTGCCTCTGGTTGCAAAAGCAACACGC
CAAAAAAATTGAGGAGACCAGAAATAGGGCGTACATCCCGGAATGGAGAT
CCCCCCACGCGAAAAAAACTTGTTCCGCGCGATGTGATTGATGGCCTAGG
GCGCTGGCTGGATGAAACGACCAAAAGCCAATGCCGAACAGCAGCAGCGG
TGTTATGCAAGCACGCTGCAGCCCGTGATGTGATGGCGGTGTCGCGTCAT
GTCGGGGTCCATTCGGGGCGCTAGCTGTGTACCTCTCCGACGGAAAGGAA
CAGCACCAACTCGCACCAACCCTCTGTTGGTGGTACTGCCGCTGTACTAG
TTAACTGTAGCACGCGCGATCTGTTTATTAAGCCTCCCACTCTGTAACAG
TTCAACTGCATCGCGTCGGCACCCAAGGTCGTGTGCGGTGTGTGTGTGTG
TGCCCGGCAACGGCGCGTCGCGGTTGCCAACTGTCCGTTCGCTCAGCCGG
TGGCTTTTTTCCCTCCAACGCAGAAACACTTTAGATCATGCGTGAATCAA
TCTTGTTTTTTCGTCTCCTTAACGTGTTTGTACATAGCGGCCGGCGGGCC
TTTCTTTCCTCTTTTATTTATTTGTTTATTTACTCCCCGTATTTATTTTT
TGTTACTGTCTTTTTTGGTATTTATTTCTCTTTTTCCCTCTTTTTACATA
CAGGAAAGACAAGACGTTCGTGGCGGGCGGCGCCGCCGGCAAGCTGCTGC
TCAACAAGAAGGGGTGGCTCGGGCACGACGAGATTGTCCTCCACAAGGGG
GAGGGGCCGGTGTCCGCCATCGCCTGGAGGTATGACATGATACATAAGAG
AATCTACGGTTGTGCGTGCGCGCCGTTCGTCTGCGTTTTTTTGTTTTGAA
TATGCATATCAGCGTCGCTTAAGGTCGCATGAGCCGATCGCTTGGTGGAG
TTTTTTGTTCTTCTTTTTCTCCCTGGTCAGAGCTACTTTCTCCTCAGCCG
CGTTGGATCATGACGTCGGCCGACCCGGACACCAGTACAACACGACCGAT
GCATGCACCAACACATAAATAAGACACAACAGCAGTAACATGGTTTCAAA
GAGAGCACATCGTAGACTTCGTGAGAGAAATCAAACCGGTGCGAGGTATG
CAGCCAGCATCAGCGTGATTTCAGTTTTTTTTTTTTTTAATCTTCACACC
TATGCCAGCACTATTTAGAGCCTCCTTGCCACGAAGGGCGTTTTGCCAGA
GAGTACTGATCCGTGGTCACACAGAAGGGTTCCTCTCCCTGAGGCCCCCA
GGCTGTGATCAGAAAACGCGACTCTTCGAGCTAAGTAACTAACGAACGAC
CGTTCTGTGGCACTCTCGCGTCTCCCCTCCGCGCGTTGATGCTGGTGCCG
GTGTGTTGATATTGATGCTTGTGCTGATGTTTTGATGCCGATGGAAATGT
TTTGATGCTGATGCTGACGCCGATGCTGATGTTGTTTTGGTGTTGATGCT
TTGTGCTGATGTTTTTATGTATCCTGATGGTGGTGCTGACGTCGACACGG
CCAAAGGGGTCCTCTCGTGGCGTGGGCATCGGACGGGGGGCTGAAGATCA
TGGATGTCGACAAAGGCAAAGCAGGAGAACGAATAAGCTACGTTGACAAG
TGAGCGAGAGAGATGCGGCGGCGGGATGGGGACGTGGGGGGCGAGAGAGA
CAGAAACAGAGACAGAGACAGAAAAAAAGAGGCGCCGTGAATGTCGTACA
GTACCCACCTGCTCGGCACGCTGCTCCCGGAGCAAGAAATTCAACTGTTT
CATCCACGCACAACACGTGACGGCTGTGCCGTATACCTACCCCACTGCTG
CTGCTGCTGTGTCTTTTTTTAGAGCCGATCCGGGCGCGTTGGTGATCATG
CGGGCAGTGCGGTTTTTGTGACATGATGAACAACGGACGATAGGTATTCT
TGCCACAAGGCAACCTGCCAATGATGTACCAATCCATTCCATACCAACCA
TACCATACCATACCATACCATACCGCCCCTGCCCCTTGATGTTTTGTTGT
CTCAGGCCGCGGTCTCTGGTAGACTTGAAGGAGCACGAGTGCCGATGCCA
CATGCTGTGGGAAACCCCGACGGTAAGCGGCATGCGCCATTACAGATGCT
ACATACATAACATAACGCGTGCAGATGCCATCTTGTTTTCTTCTCTCCTT
GCTGTCCCCGGGTCGTGTGCTTTGCGTTTTTGGTGCTGTGGTTGCTGTCG
ATTGAGAAGATATCTCTGGCGTAGGGTAACCTTTTCGATCGGGCCCGGGG
GGCCCGCGGTTTCACCCCGGGGGGGCCGCGGTCTGGCCCCGGCCTGCCTC
TGAGGTGCTCGACCGGGGGGTGAAACAATTGAGACACCAAAGCAAGCACG
ATACCTCGTGCCGGCTGCTGTTTTTTTTAATCGCAACAAGAATATTTAGC
ATGGGAACAAAGGACAGCATCCTTAGGTGCTCGACCCCCTTACCTTCGGT
TCGCGCGCCACGCTCACTCACCCGGGTTGCGGGGGGCTTCGTAACGCGTT
TTTTTGCAGTTTTGATCACGAGCACCGAGAATGCGGAGCCCCCGCTGGCC
CGCTTTCGCTATATATATTGTAGGGCCGGGCAGTCATTCCATGATGGCTC
CGGCTGTAGTTGTGATCCAAAACCCCTTCCGTTTACCTTCAAAATAATCT
CTTTGGATTGCTCTACAGCCTGATACCATCGCGTCGCGAAGATTTTCGGG
GCATGTTTTCGGCGGCCAAATCCGCGATAAGGGTTCAAATTGGGGAGCCT
TTCTGGAGAAAAAACGATCTAACATCGTTGGTGGTAGTCAACATCATTGG
AGGTAGATTCATGGTGCGTGATTTTCTGCCCGTCTGTAAAGAGAGGTGAC
TTCGGGTGTTCGCTTGTGTGACCGTCATGCCTGGGATCCAGAGATTAAAA
TTCTGCCAAGCGTCTACAATATGCAATATATGCGTATGTTCCTCCACTGC
TGTGTACCGAAACACCGAGCGATTTCGTGTACTCCTTTGAAGGCCGACAG
CCGCGTGAAGTTTGCTGTTGGGGGGCAAAAATTGAGCCCGAAAAGCGGCA
GCAGGAGGCTTCCTCCAGTCGCGACGACGCAGCATTCCTCGGGCTCAGGG
AAAAACGAACGCATATATGCATATATGCCGCTTGCGGGCGTATTTAGAAT
AAGATATATCTGAGGCCTTCTATATAAAATTTGGAGATCAAGCGACGGCC
TGTGTGAGGGGCATAGTCTTGCTGAAAAATAGGTGGTGGGCGACTCACAA
CCGAGCTCAGCGAAAATAAACCGCTTGCGGGCTGTGAGAGGAATTTCCCA
CTTGTGTGGACCCCAGTGAACATTCTTATTTCACGGAGCCCCCACAACCC
GTGAGATTGTCTGAGCACGCACGCACCCCCCCGGGATGTGTCTACCTGCG
TAACAATCTCACGGCACCCCCCCCTCCCCCCCCATAACCACTGCGCTCCC
TTGCAGCGCCTGCTCGTGGGCTGGGGAGACACCGTGATGGTCCTCCAGAT
CCTCGTTCGCGAGCCAAAGTACCAACGCAACACCGGGAGCCTCTCCCCCG
AGAGGCAGCAGCAGCAGCAATCTCCTCCGGCCGGAGGAGGGGGAGGGGGA
GGGGGAGGCTACGGCGGCAACGCGAGCGTCAACAACCGGCGGACGTCGGT
GCCCCTGACGAACCCCATCGGCGGCGGCCTGCCCCTGGCGGTGATCGGCG
CGCCGACGGCGGCCGCGCCCGCGTCGCTCGAGGCCCCCGAGAGGTACACC
CAGATCGGGGCGGTGTGGCAGTCCGACTGCCTCGTGTGCGGCCTCTCGCC
GTTCGACAGTGAAACGCTCATCCTTCTTGGCTACCCCGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig753:21389..28178+

>mRNA_L-elsbetiae_contig753.16428.1 ID=mRNA_L-elsbetiae_contig753.16428.1|Name=mRNA_L-elsbetiae_contig753.16428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig753:21389..28178+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGAGCGGTCAGCAGCGGGGCGGGGGAGGGGGGAGGAGACTATGA
CGATGAGCCAGTGCTCAAGTATCAGAGGATGGGAGCGGACGTTGGCAGCC
TCCTCGCTGCCGATGCCGGCGAAAAGGAGACCGTCGTGAGGATGGCGGTC
CACGATACCTGCTTGATGGACGGAGCGGTCAGCAGCGGGGCGGGGGAGGG
GGGAGGAGACTATGACGATGAGCCAGTGCTCAAGTATCAGAGGATGGGAG
CGGACGTTGGCAGCCTCCTCGCTGCCGATGCCGGCGAAAAGGAGACCGTC
GTGAGGATGGCGGTCCACGATACCTGCTTGGTTTTCGGGACTGCGACAGG
GACTATCCTGCTGACGGACTACCACGGCAACGAAACTCGACGAATACGGC
CGCACAAGAAACCCGTGACCGATCTAAGCATGGACGTCACCGGCGACTTC
TTGGCCAGGTTTTCGGGACTGCGACAGGGACTATCCTGCTGACGGACTAC
CACGGCAACGAAACTCGACGAATACGGCCGCACAAGAAACCCGTGACCGA
TCTAAGCATGGACGTCACCGGCGACTTCTTGGCCAGCTGCTCGGAAGACG
GCACAGTGGTCGTTACGGGGTTGCAGCCGGGACCCAACGGCGAGCAACCC
CCCCCGGAGGTGTACAGCTACGGTGCCAAGTGGCCGATGCTGGCCGTCAA
GCTGGACCCCCTCTACGCCAGAAGCTGCTCGGAAGACGGCACAGTGGTCG
TTACGGGGTTGCAGCCGGGACCCAACGGCGAGCAACCCCCCCCGGAGGTG
TACAGCTACGGTGCCAAGTGGCCGATGCTGGCCGTCAAGCTGGACCCCCT
CTACGCCAGAAGGAAAGACAAGACGTTCGTGGCGGGCGGCGCCGCCGGCA
AGCTGCTGCTCAACAAGAAGGGGTGGCTCGGGCACGACGAGATTGTCCTC
CACAAGGGGGAGGGGCCGGTGTCCGCCATCGCCTGGAGGAAAGACAAGAC
GTTCGTGGCGGGCGGCGCCGCCGGCAAGCTGCTGCTCAACAAGAAGGGGT
GGCTCGGGCACGACGAGATTGTCCTCCACAAGGGGGAGGGGCCGGTGTCC
GCCATCGCCTGGAGGGGTCCTCTCGTGGCGTGGGCATCGGACGGGGGGCT
GAAGATCATGGATGTCGACAAAGGCAAAGCAGGAGAACGAATAAGCTACG
TTGACAAGGGTCCTCTCGTGGCGTGGGCATCGGACGGGGGGCTGAAGATC
ATGGATGTCGACAAAGGCAAAGCAGGAGAACGAATAAGCTACGTTGACAA
GCCGCGGTCTCTGGTAGACTTGAAGGAGCACGAGTGCCGATGCCACATGC
TGTGGGAAACCCCGACGGCCGCGGTCTCTGGTAGACTTGAAGGAGCACGA
GTGCCGATGCCACATGCTGTGGGAAACCCCGACGCGCCTGCTCGTGGGCT
GGGGAGACACCGTGATGGTCCTCCAGATCCTCGTTCGCGAGCCAAAGTAC
CAACGCAACACCGGGAGCCTCTCCCCCGAGAGGCAGCAGCAGCAGCAATC
TCCTCCGGCCGGAGGAGGGGGAGGGGGAGGGGGAGGCTACGGCGGCAACG
CGAGCGTCAACAACCGGCGGACGTCGGTGCCCCTGACGAACCCCATCGGC
GGCGGCCTGCCCCTGGCGGTGATCGGCGCGCCGACGGCGGCCGCGCCCGC
GTCGCTCGAGGCCCCCGAGAGGTACACCCAGATCGGGGCGGTGTGGCAGT
CCGACTGCCTCGTGTGCGGCCTCTCGCCGTTCGACAGTGAAACGCTCATC
CTTCTTGGCTACCCCGTCCGCCTGCTCGTGGGCTGGGGAGACACCGTGAT
GGTCCTCCAGATCCTCGTTCGCGAGCCAAAGTACCAACGCAACACCGGGA
GCCTCTCCCCCGAGAGGCAGCAGCAGCAGCAATCTCCTCCGGCCGGAGGA
GGGGGAGGGGGAGGGGGAGGCTACGGCGGCAACGCGAGCGTCAACAACCG
GCGGACGTCGGTGCCCCTGACGAACCCCATCGGCGGCGGCCTGCCCCTGG
CGGTGATCGGCGCGCCGACGGCGGCCGCGCCCGCGTCGCTCGAGGCCCCC
GAGAGGTACACCCAGATCGGGGCGGTGTGGCAGTCCGACTGCCTCGTGTG
CGGCCTCTCGCCGTTCGACAGTGAAACGCTCATCCTTCTTGGCTACCCCG
TC
back to top