mRNA_L-elsbetiae_contig7528.16419.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16419.1
Unique NamemRNA_L-elsbetiae_contig7528.16419.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16419.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.530e-22
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 LQEPLVWALRRTAERDFLRAGPCLDSPGIGWDGLDMEHLPSPVDQVSPRPGLDQRGEGVPGTGMRGALQP 210
            LQEPLVWALRRTA R++LR GPCL+S G+GWDGLD++ LP PVDQ  PRPG  QRG    G+   GALQP
Sbjct: 4824 LQEPLVWALRRTAGREYLRPGPCLESSGLGWDGLDVDRLPPPVDQAGPRPGPGQRG--ASGSDGGGALQP 4891
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BLAST of mRNA_L-elsbetiae_contig7528.16419.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-20
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 LQEPLVWALRRTAERDFLRAGPCLDSPGIGWDGLDMEHLPSPVDQVSPRPGLDQRG 168
            LQEPLVWALRRTA R++LR GPCL+S G+GWDGLD++ LP PVDQ  PRPG  QRG
Sbjct: 4392 LQEPLVWALRRTAGREYLRPGPCLESSGLGWDGLDVDRLPPPVDQAGPRPGPGQRG 4447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE3.530e-2267.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI1.080e-2073.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:4550..4844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.5436563-CDS-L-elsbetiae_contig7528:4549..48431622816836.5436563-CDS-L-elsbetiae_contig7528:4549..4843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 4550..4843 +
1691683850.5019343-CDS-L-elsbetiae_contig7528:4549..48431691683850.5019343-CDS-L-elsbetiae_contig7528:4549..4843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 4550..4843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16419.1prot_L-elsbetiae_contig7528.16419.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 4550..4843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16419.1

>prot_L-elsbetiae_contig7528.16419.1 ID=prot_L-elsbetiae_contig7528.16419.1|Name=mRNA_L-elsbetiae_contig7528.16419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
LQEPLVWALRRTAERDFLRAGPCLDSPGIGWDGLDMEHLPSPVDQVSPRP
GLDQRGEGVPGTGMRGALQPPPPPSSREEGKEAAASAAAAAVAAGFLA
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mRNA from alignment at L-elsbetiae_contig7528:4550..4844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16419.1 ID=mRNA_L-elsbetiae_contig7528.16419.1|Name=mRNA_L-elsbetiae_contig7528.16419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=295bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:4550..4844+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCAGGAGCCGCTCGTGTGGGCGCTGCGGCGGACTGCCGAGCGGGATTT
TCTCCGCGCGGGCCCCTGCCTCGACTCTCCCGGGATAGGATGGGACGGGC
TGGACATGGAGCACCTGCCGTCGCCCGTGGACCAGGTAAGCCCTAGACCA
GGCCTCGATCAGCGAGGAGAGGGGGTTCCGGGCACTGGCATGAGGGGGGC
CTTGCAGCCGCCGCCGCCGCCATCATCGCGAGAAGAGGGCAAGGAAGCTG
CTGCCAGCGCTGCCGCCGCGGCGGTCGCCGCTGGTTTCCTGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:4550..4844+

>mRNA_L-elsbetiae_contig7528.16419.1 ID=mRNA_L-elsbetiae_contig7528.16419.1|Name=mRNA_L-elsbetiae_contig7528.16419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:4550..4844+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCAGGAGCCGCTCGTGTGGGCGCTGCGGCGGACTGCCGAGCGGGATTT
TCTCCGCGCGGGCCCCTGCCTCGACTCTCCCGGGATAGGATGGGACGGGC
TGGACATGGAGCACCTGCCGTCGCCCGTGGACCAGGTAAGCCCTAGACCA
GGCCTCGATCAGCGAGGAGAGGGGGTTCCGGGCACTGGCATGAGGGGGGC
CTTGCAGCCGCCGCCGCCGCCATCATCGCGAGAAGAGGGCAAGGAAGCTG
CTGCCAGCGCTGCCGCCGCGGCGGTCGCCGCTGGTTTCCTGGCGCTGCAG
GAGCCGCTCGTGTGGGCGCTGCGGCGGACTGCCGAGCGGGATTTTCTCCG
CGCGGGCCCCTGCCTCGACTCTCCCGGGATAGGATGGGACGGGCTGGACA
TGGAGCACCTGCCGTCGCCCGTGGACCAGGTAAGCCCTAGACCAGGCCTC
GATCAGCGAGGAGAGGGGGTTCCGGGCACTGGCATGAGGGGGGCCTTGCA
GCCGCCGCCGCCGCCATCATCGCGAGAAGAGGGCAAGGAAGCTGCTGCCA
GCGCTGCCGCCGCGGCGGTCGCCGCTGGTTTCCTGGCG
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