mRNA_L-elsbetiae_contig7527.16418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7527.16418.1
Unique NamemRNA_L-elsbetiae_contig7527.16418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 1.040e-110
Identity = 170/196 (86.73%), Postives = 187/196 (95.41%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYISQV 654
            R P++PIAEALDLVK GAKA FDETVEVAMVLN+DPRKANQTVRGTVQLP+GSGK+VRVAVFAKG+DA AATAAGADIVG +DL+AS+M+G I+FERCVATPEMMS+VGRAARVLGPRGLMPNAK+GSVTRDV AAV+AAKGGQAQFRAGKNG LH+GVGKVSF RSDL+ENVRATMVAISNLKPE+IKGKYISQV
Sbjct:   50 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGTEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAISNLKPEVIKGKYISQV 245
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A6G0WIL3_9STRA (Ribosomal protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIL3_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.230e-75
Identity = 125/193 (64.77%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYI 645
            ++P+  + +AL L K  A  KFDETV++ + L +DPRK NQ+VRG V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA I  GKI+F+RCVATP+MM LVGR ARVLGPRGLMPN K+G+VT+DV AA++AAKGGQ +FRA K G++H GVGKVSF    LVEN+RA MVAI   KPE  KGKYI
Sbjct:   40 KKPLLSLPDALTLCKQHAVRKFDETVDIVVELGVDPRKPNQSVRGVVMLPNGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKIDFDRCVATPDMMGLVGRVARVLGPRGLMPNPKLGTVTQDVTAAIQAAKGGQVEFRAEKKGIVHAGVGKVSFSDEALVENIRAFMVAIGEAKPEGAKGKYI 232
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC)

HSP 1 Score: 235 bits (599), Expect = 1.420e-74
Identity = 122/193 (63.21%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYI 645
            ++P   +  AL   K  A  KFDETV++ + L +DPRK NQ+VRG V LP G+GK+VRVAVFAKGE A  A AAGA IVGA+DLLA I  GK++F+RC+ATP+MM+LVGR ARVLGPRGLMPN K+G+VT+DV+AA+ AAKGGQ +FRA K G++H GVGKVSF    L+EN+RA MVAI + KPE  KGKYI
Sbjct:   41 KKPFLDLPTALANCKENAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKTVRVAVFAKGEKAEEAKAAGATIVGAEDLLADIQAGKLDFDRCIATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYI 233
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A485K7N6_9STRA (Ribosomal protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7N6_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.010e-74
Identity = 123/193 (63.73%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYI 645
            ++P+  + +AL   +  A  KFDETV++ + L +DPRK NQ+VRG V LP G+GK VRVAVFAKGE A  A AAGA IVGA+DLLA I  GK++F+RCVATP+MM+LVGR ARVLGPRGLMPN K+G+VT DV AA++AAKGGQ +FRA K GV+H GVGKVSF  + L+EN+RA MVAI   KPE  KGKYI
Sbjct:   40 KKPLLLLPQALTTCREHAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKVVRVAVFAKGEKAEEAKAAGASIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTNDVTAAIQAAKGGQVEFRAEKKGVVHAGVGKVSFTDAALIENIRAFMVAIGEAKPEGAKGKYI 232
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A024UFR5_9STRA (Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UFR5_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.310e-74
Identity = 122/193 (63.21%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYI 645
            ++P+ P+  AL   K GA  KFDETV++ + L +DPRK NQ+VR  V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA I  GK++F+RCVATP+MM+LVGR ARVLGPRGLMPN K+G+VT+DV AA+KAA+GGQ +FRA K G++H GVGKVSF    L+EN+RA MVA+   KPE  KGKYI
Sbjct:   42 KKPLLPLNVALVECKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVSLPHGTGKVVRVAVFAKGDKADEARAAGAAIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYI 234
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: UPI001A95871A (50S ribosomal protein L1 n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95871A)

HSP 1 Score: 231 bits (590), Expect = 1.250e-73
Identity = 120/196 (61.22%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYISQV 654
            R  ++ + +A+ L+K+GAKAKFDETVE+AM L IDPR A+Q VRG V LP G+GK+VRVAVFA+G+ A  ATAAGADIVGADDL   I+ G INF+RC+ATP+MM +VGR  +VLGPRGLMPN K+G+VT DVA AV+AAK G  +FRA K G++H G+GK SF    L EN+RA + AIS  KP   KG YI +V
Sbjct:   17 RDALYSLTDAVTLIKNGAKAKFDETVEIAMNLGIDPRHADQMVRGVVNLPNGTGKTVRVAVFARGDKADQATAAGADIVGADDLAEQILAGNINFDRCIATPDMMGVVGRLGKVLGPRGLMPNPKLGTVTPDVAGAVQAAKAGSVEFRAEKTGIVHAGIGKASFSEDALAENIRAFIDAISRAKPTGAKGTYIEKV 212
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A143DB78_9PROT (50S ribosomal protein L1 n=4 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DB78_9PROT)

HSP 1 Score: 229 bits (585), Expect = 6.740e-73
Identity = 118/196 (60.20%), Postives = 152/196 (77.55%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYISQV 654
            R  ++ + EA+ LVK G++AKFDET+EVA+ L +DPR A+Q VRG V+LP G+GK+VRVAVFAK   A  A AAGADIVGA++LL SI +GKI+F+RC+A+P+MM LVGR A++LGPRGLMPN K+G+VT DVA+AVKAAK GQ QFR  K G++H G+GK SF+   LVENVRA + A+   KP   KG Y+ +V
Sbjct:   17 REKLYTLVEAVGLVKGGSRAKFDETIEVAVNLGVDPRHADQMVRGVVELPHGTGKAVRVAVFAKAGKADEAKAAGADIVGAEELLESIQQGKIDFDRCIASPDMMGLVGRVAKILGPRGLMPNPKLGTVTVDVASAVKAAKAGQVQFRVEKAGIVHAGIGKASFDEGKLVENVRAFVDALQKAKPSGAKGSYMQKV 212
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A420DQY0_9RHOB (50S ribosomal protein L1 n=1 Tax=Sulfitobacter guttiformis TaxID=74349 RepID=A0A420DQY0_9RHOB)

HSP 1 Score: 229 bits (584), Expect = 9.560e-73
Identity = 118/190 (62.11%), Postives = 148/190 (77.89%), Query Frame = 1 
Query:   85 IAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYISQV 654
            + EA+ L+K+ +  KFDET+E+AM L IDPR A+Q VRG V LP G+GK VRVAVFA+G  A  ATAAGADIVGA+DL+  IM GKI F+RC+ATP+MM +VGR  +VLGPR LMPN KVG+VT DVAAAVKAAKGG+ QF+A K GV+H GVGKVSF+ + LVEN+RA + A++  +P   KG Y+ Q+
Sbjct:   23 VEEAVSLIKANSNTKFDETIEIAMNLGIDPRHADQMVRGVVGLPNGTGKDVRVAVFARGPKADEATAAGADIVGAEDLMDIIMGGKIEFDRCIATPDMMPVVGRLGKVLGPRNLMPNPKVGTVTMDVAAAVKAAKGGEVQFKAEKGGVVHAGVGKVSFDEAKLVENIRAFVSAVAKARPAGAKGSYLQQI 212
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: W4FM96_9STRA (Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM96_9STRA)

HSP 1 Score: 230 bits (587), Expect = 9.640e-73
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:   67 RRPMHPIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYI 645
            ++P+ P+  AL   K GA  KFDETV++ + L +DPRK NQ+VR  V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA I  GK++F+RCVATP+MM+LVGR ARVLGPRGLMPN K+G+VT+DV AA+ AA GGQ +FRA K G++H GVGKVSF    L++N+RA MVA+   KPE  KGKY+
Sbjct:   41 KKPLVPLNVALAACKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVTLPHGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYV 233
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BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Match: A0A3M2EF17_9PROT (50S ribosomal protein L1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EF17_9PROT)

HSP 1 Score: 229 bits (584), Expect = 1.160e-72
Identity = 119/191 (62.30%), Postives = 147/191 (76.96%), Query Frame = 1 
Query:   82 PIAEALDLVKSGAKAKFDETVEVAMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADIVGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGSVTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMVAISNLKPEIIKGKYISQV 654
            P+ EA+ LVK  AKAKFDET+E+AM L +DPR A+Q VRGTV LP G+GK+VRVAVFA+G  A  A  AGADIVGA+DL+  I  G+I+F+RC+ATP+MM LVGR  ++LGPR LMPN KVG+VT DVA AVKAAKGGQ QFRA K GV+H GVGK SF+   L+ENVRA + A++  +P   KG YI ++
Sbjct:   22 PLEEAVKLVKENAKAKFDETIEIAMSLGVDPRHADQMVRGTVTLPNGTGKNVRVAVFARGPKADEAREAGADIVGAEDLVERIQAGQIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVAEAVKAAKGGQVQFRADKGGVVHAGVGKASFDEKALLENVRAFIDAVNKARPSGAKGTYIKRI 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7527.16418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI1.040e-11086.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0WIL3_9STRA1.230e-7564.77Ribosomal protein n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A067C8G8_SAPPC1.420e-7463.21Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=47... [more]
A0A485K7N6_9STRA2.010e-7463.73Ribosomal protein n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A024UFR5_9STRA4.310e-7463.21Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860... [more]
UPI001A95871A1.250e-7361.2250S ribosomal protein L1 n=1 Tax=Azospirillum sp. ... [more]
A0A143DB78_9PROT6.740e-7360.2050S ribosomal protein L1 n=4 Tax=Haematospirillum ... [more]
A0A420DQY0_9RHOB9.560e-7362.1150S ribosomal protein L1 n=1 Tax=Sulfitobacter gut... [more]
W4FM96_9STRA9.640e-7361.66Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID... [more]
A0A3M2EF17_9PROT1.160e-7262.3050S ribosomal protein L1 n=1 Tax=Alphaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7527contigL-elsbetiae_contig7527:2278..8237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.6
Seed ortholog evalue2.3e-87
Seed eggNOG ortholog2880.D8LST1
Preferred nameMRPL1
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942,ko:K02863
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0081@1,KOG1569@2759
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Ec32 orthologEc-15_002720.1
Exons6
Model size657
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7527.16418.1prot_L-elsbetiae_contig7527.16418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7527 2278..8236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.4186058-CDS-L-elsbetiae_contig7527:2277..24241622816836.4186058-CDS-L-elsbetiae_contig7527:2277..2424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 2278..2424 +
1691683850.42353-CDS-L-elsbetiae_contig7527:2277..24241691683850.42353-CDS-L-elsbetiae_contig7527:2277..2424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 2278..2424 +
1622816836.4303994-CDS-L-elsbetiae_contig7527:3321..34081622816836.4303994-CDS-L-elsbetiae_contig7527:3321..3408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 3322..3408 +
1691683850.4372551-CDS-L-elsbetiae_contig7527:3321..34081691683850.4372551-CDS-L-elsbetiae_contig7527:3321..3408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 3322..3408 +
1622816836.4428356-CDS-L-elsbetiae_contig7527:5250..53531622816836.4428356-CDS-L-elsbetiae_contig7527:5250..5353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 5251..5353 +
1691683850.4467018-CDS-L-elsbetiae_contig7527:5250..53531691683850.4467018-CDS-L-elsbetiae_contig7527:5250..5353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 5251..5353 +
1622816836.4534464-CDS-L-elsbetiae_contig7527:6275..63791622816836.4534464-CDS-L-elsbetiae_contig7527:6275..6379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 6276..6379 +
1691683850.4567888-CDS-L-elsbetiae_contig7527:6275..63791691683850.4567888-CDS-L-elsbetiae_contig7527:6275..6379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 6276..6379 +
1622816836.4653876-CDS-L-elsbetiae_contig7527:7284..73921622816836.4653876-CDS-L-elsbetiae_contig7527:7284..7392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 7285..7392 +
1691683850.466836-CDS-L-elsbetiae_contig7527:7284..73921691683850.466836-CDS-L-elsbetiae_contig7527:7284..7392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 7285..7392 +
1622816836.4778838-CDS-L-elsbetiae_contig7527:8131..82361622816836.4778838-CDS-L-elsbetiae_contig7527:8131..8236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 8132..8236 +
1691683850.4772139-CDS-L-elsbetiae_contig7527:8131..82361691683850.4772139-CDS-L-elsbetiae_contig7527:8131..8236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7527 8132..8236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7527.16418.1

>prot_L-elsbetiae_contig7527.16418.1 ID=prot_L-elsbetiae_contig7527.16418.1|Name=mRNA_L-elsbetiae_contig7527.16418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
KSKNKKNRKSSPSQAQAAAAAARRPMHPIAEALDLVKSGAKAKFDETVEV
AMVLNIDPRKANQTVRGTVQLPRGSGKSVRVAVFAKGEDAAAATAAGADI
VGADDLLASIMEGKINFERCVATPEMMSLVGRAARVLGPRGLMPNAKVGS
VTRDVAAAVKAAKGGQAQFRAGKNGVLHIGVGKVSFERSDLVENVRATMV
AISNLKPEIIKGKYISQV
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mRNA from alignment at L-elsbetiae_contig7527:2278..8237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7527.16418.1 ID=mRNA_L-elsbetiae_contig7527.16418.1|Name=mRNA_L-elsbetiae_contig7527.16418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5960bp|location=Sequence derived from alignment at L-elsbetiae_contig7527:2278..8237+ (Laminarionema elsbetiae ELsaHSoW15)
AAGTCCAAGAACAAGAAGAACCGCAAGTCGTCGCCGAGCCAGGCTCAGGC
GGCCGCTGCAGCCGCGCGGAGGCCCATGCACCCCATCGCCGAGGCTCTGG
ACCTGGTGAAGAGCGGCGCGAAGGCCAAGTTCGACGAGACTGTCGAGGTG
ACTCGCTGTTCGCCCTCGAGTTTTTCATTCATCCTCTTATCTTATCCTGC
AAGTTTATGTATACATCACACGAAGCGCTTCGATACAAGTTCCCAGCCTC
TATCTTATCCTGCAAGTTTATGTATGCATCACACGAAGTGCCTCGTATAT
ATATACAAGTCCCCCCTTTCAGACATTGCTCATGGCCGGGACATTTCGGG
GGGTGAAGCAAGACAACAGCAGTGTTGGAATGCTGTTGTTGGAGTTGCGC
ACACTATGAGTTACCGCGTCACACGAAAGAGCCGGGACGGGCGTACGTCG
CCACGTGCGTCGCCAGCCTGAAAAGTCTCCGGAAAAGTCTAGCTCCAGTC
CCCTTAAGTGGCTTGACCAACAGGCCCACAGACCCTGCACCCCAAAGGAA
AACTCAATCTGTATTTATATATTCATACGAAAGTAATAGTCTATGCCTGT
GGGCAAAATACATTTTATCTGCACATGGTGCTCTTTCGTCTTTGTTCCGA
TCGCCCCCTTAAGTTTGCCGAAGGGGGGATGCATTGTGAGCAGAAGCCAG
CCATCTCTGTTGCGTCGGCGCTTCCCTCCCGTGCCGGGCTCTTAAGGGTG
ATCGGCACTACTATCTGTTGGGCCTGTGCCGATGGCGCGGACGATGTTGA
TATCTGCCACAGCAGTAGTCTACTTACCCCTTTTTTGACCACGCCCCCAG
ATCTTGTCTCCGCCATCACGTTGCCTCTCGCGTCGTCTCCCCCCTCCACT
CCCCGCCCCCGTGTGTGCAGGTTGTTGGTGCCTGCACCTTCATTTCCGTC
CCTCAACCGCCCATTAATTGTCTGTTCGCGCCCCGCATCACACTGCCTCT
CGCGTCTCCCCCCTCCCCCCACTCCCCACCCCCGTGTGTGCAAGGTGGCT
ATGGTGCTGAATATTGACCCCCGGAAGGCGAACCAGACGGTCAGGGGCAC
CGTGCAGTTGCCCAGGGGTAGTGGCAAGTCGGTGAGAGTGGGCCGGGGGA
GGGGCGTCAATTTTTCTGTCAATGTGTTTTGTAACTTGGTACTTCGTACT
TGGAAAAGAGAGAGGAAGAAGAACAAATACGAGGAAGGAAGGGGGGGGAG
GGGGGCAGACCGGGGGTTCGCTGGGCATATTCGAAGTATTATATGTATGT
ATAGAAGTATGCCTCAAAGCAACGAGATTAGGAGGGGGGGAGAGTTGGTG
CTGGGGGGACAGTTCGCAAGCTGTTGTTGGCGCCTCTTCTAAGAACAACA
GAACAAGCAACCGGCTTTTTGAATGTGCTGTTCGATTCTTCGGGGTTCGG
ATTTATCTTCTTTTAGCAGCGCTCGGCCTGTGCGCAGGCTAAAGTTGCGC
GACGTCCGGCAGACATGCAAAGGCTGCATACACACTGACCTTACGTACGT
CGGGGGCTCCGTGCGGTCAAGGCCGTGGGATGCAGCCGGGTAAAGGTGCA
GCGGATGAGGTATCGTTCTGCTCTCTCTCTCTCGACAGAGAGAGTTTTCG
CGTGAAAGTCAAGACACCCCTTGTTTTTATCCGTGTCTTCATCAAGACCT
GTGGTGTTTTGCCAATTGGCAGAGGTATTTCCCGCGCTGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCCCTTCCCTTCCCT
TCTTCCTCNNNNNNNNNNTTCCCGTAAAGGCAAAGCCCCCCCTTTTTTTT
TCCCGTTCTTCCCCAAAGCCCTTGGGTTTTTTCCCATTTGGCGGGGGTTT
TCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCATTTTTTCCTTATCCTGG
TGCCCACTTTTGAATGGCTCACATGTCAGACAACCGGTCTGGTTTCCTCA
GGAATGGTATTTTGGTAGGTAGGTACAACAGCAGTGTTGCTCGTCCATAT
AAGGCTGTATGTACATAATTTACGCAGCCACGACTTGCGATACGTGCAAC
GAGGCGTTCGTGTCACATGAGACCGTAATTAGAGGATGCAGCCACGACCT
TGCGTGCGTCTGTTTTAAGTCTCGTTCGAGCGTGTGTAAGTCTCGCGCGC
AAGGGAAGCAGGCCCAGTGCCCATGGAGGCCAGTGGTCCGAGACACCGAC
CGGCCGACCTCGCGCGTGCTGCTTCGAAGAAAAAAGTGGCACGGGGTCAT
GATAAAGAGAATGGGATACCGTAGGTGACACAAGACACCACACCCCCTGG
ACAGATTTTCAAAGCTCGATTCCTCCCCCGCCAGAAGAGTGAGTGCCAAA
AAAGGTGGCGTTGGAAATATCTAGTCGAGGGCTGTCCGAAAATGTCAGGT
CGTTTGGTGCTGGCACCTTCTTCGTTGCGGAGTATTGGAGCTCTAAAATT
CGGTCCAGGGGGTGTGGTATCTTGTGTCACCTATATACGGTAGATAGTGT
AGGATAAAAGAACGCGCTTCTTTTCACTCCGTTTTTGGGTAAATACACGT
GCTGATGTAGCGCGGTCGGTGCGCATGTTTTCGGTTTCTCCACCCGCCGC
CATCATGTTTCCGCGAATAACTTGTTCCCCCTCAAAAAAGCGTCGAGCGC
GCGCGTCACGGTGTTTGCTCTCTCTCGCCGGTATTTTTTTTTTTTTTTTT
TTTTTTAATTTTTTTTTCGTTTTGTTGGGTTGCGGGGTGGGTTTGGTGGA
GGGAGGGGGAGGGGGGGCGGGGAGCGGGGGGGGGGCGGNNNNNNNNNNTT
GTGTATCAAAAAACCTGTTGGTGCCCGGGGGTAGGGCGTTTGGTGATCGC
GTCACGGTGTCGCCTCCTTCTCGCCGGTATTTTTTTTTTTTTTTTTTTTG
TAAATGATTTTGTCGTGATGCAGGTTCGCGTGGCGGTTTTCGCGAAGGGA
GAGGATGCGGCGGCGGCGACCGCGGCGGGGGCGGACATCGTTGGCGCCGA
CGATCTCCTGGCGTCCATCATGGAAGGTGGAACGATATAGTTGCTGCTGC
TGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGCGCTGCGT
GCTAATTTACACGAGGCGCACGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCACACCCTCCCCGGCAACACAAAACAACAAGAAAACAAAAAA
AAAACAAAAAAAAAAANNNNNNNNNGCGCCCCCCCCCCCCCCCCGCCATA
CGCGTTTCAATCGATATTTCTTTCGGAAAAAAAAAAGAAACAAAAAAAAA
GAAAAAGAAAAGTCGACACCCTTGACAGCGACATGATGCAGCAGTAGTAC
AGCCTTGGTAGTGGACTCGTTTCGGTCTCCGAAGGTGCATCGGATTAAAT
CAAGCGTTTCAGGGTTCCAAGTACATACATACTACATACTACATACATAC
ATACATACACCCGTACATACGTACATGCAAAAAAAAAATAGTCTACCTGG
CGCATGGACATACATGTTTGTTTGTCCAACATTTTTAACCCCCCTCCCCC
CCTCCCACCCCCCCTCGTCCATACACAAGCCCCGGTGTTTAGCTTTTACA
CCAGCGGAGTAATAAACCTAGGTTTCGGTTGGAAGTACATAAACGCGAAA
AACCTAGGCCTACGCTAGGTTTCTGACCTTTTGGTTCACCACGGCGGTCG
GCCTAACACGCACCCTAACCACCCTAAACCCTAACCCCAACCCTAACCCT
AACCCTAACCCACACCCACACACCAGGCTAGGTTGGTGTGCCGGGTTTAG
GCCTAGGTCGCTGTACCGAGCTACTGGTGTAAATAAGACTTGACCCCAGG
GCTGGTGTATATACGCGCTGCGCCCTCCCTCCCTCCGGCTGCCCTTTGTA
CTCCGCTTTACTTGCTACCCATGTGCCGTCCCCTCTCCGCCGCTCCAGGC
AAGATCAACTTCGAGCGATGCGTAGCCACGCCGGAGATGATGTCCCTCGT
CGGCAGAGCGGCCAGGGTGCTGGGCCCGCGGGGCCTCATGCCCAACGCTA
AGGTGAAGGGAAGAGACTGCCGGAGTTTTTCAGTATCCTTTGCAAGTGTT
ATCTGCTGTATTTTTTTATGAAAGGAATCATATGGGTTAAAGTATGGTAA
CGGCTAATGGAGGGGGTCGGTTTGGGTTAGGGTTAGGGTTACGGAACCGC
TGTCTATATTTATTTACTGTTACTGTAGACTTGTAACTCTTCGTAAAGAC
GGCCCCGAAATGTTGACCCCGCCTCCACCACCACCATCGGCTCTCTCCCC
CCCCCTCTCTCTATGTATGTTATTTGTCTATCTATCTGTGGCGCCCCCGC
CACGCCCTGCCCCCCGTTCCCGCGGCATAGTTAGTCCCAACACACCGACC
GGAAACCATCTGCCGTGTTCTCCCCGCCGCCGTGTTGGGCCTGAAGACTG
GCAAAAATATATATGTATATTGAATCGCGAGTTTCCTCCGCCACGTTTTC
GGGAAAATAATAAGTCATTGGCAGAGAGGGAAAAGTGGATGCATGTCACA
CCGGAGATAAACCGCACGAAGAGATGTGCGCCTGCTTGTTTACCCAGGTT
TGTACCCCATACTCCGCATCGACTGTTTTGCTCGTAGTTTGCCTCGCAAG
TGTGTACGTATAAACCACGCCTCTTTTGTCTTTTTGCGTCTTTTTTGCTT
CGTCCGTTTGTGCATCGCCTGTCGCCTGTTGCCTGCCCGCGAGACACGCC
GTGCATGGTGGTACGAGCGTGCACACATGTTGTGACGTGTGAGCATGAGC
ATGGCGTGCGGCGTCGTTGTCTAACGCCCCCCCCCCCCCTGCTCTCCCTC
TCCCTCTCCCTCTCCCTCTCCCTCTCCATCTCCCTCTCCTTCTCCCTCTC
CCCCTCCCCCTCCCCCTCCCTCCTTCTTTTTCTCTCTCTTACAATTTCCA
CCCAAAGGTTGGCAGCGTGACTAGGGATGTGGCGGCGGCCGTCAAGGCGG
CGAAGGGGGGGCAGGCGCAGTTCCGGGCGGGGAAGAACGGGGTTCTGCAC
ATCGGGGTCGGAAAGGTGTGTTGTGCGCGTGCATGCGTTCACGCGTGGGA
GAGGGGGGGATGAGCGAGAGGGCAAAAGGACGACAGGCTTTTGACACAGG
CACCCTGTCTGTCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTGTT
TTTTTACCTTCTCCCCTCTTTGCGTCTCTCCCTTTCTTTTTTTTTTTTTC
TGTTTTTCTCCTTCCCTTCTTTCNNNNNNNNNNGGGGCGAGAGGGCAAAA
GGACGACAGGCTTTTGACACAGGCCCCCTGTCTGTCTCCCCCCCCCCCCC
CCCCTACCCCCGCTGCTTGTTATTTATCTAAGTTCCCCTCTTCTGTGGGT
CTAACTTTGTCTGTCTTTCTGTCTGTGTGTCATCTCTCTCTCTCTCGCTC
TCTCTCTCTCTTGTTGTCTCTCTCTCTCCCCCCCTCTCTCCCCTTCCCTC
TCTCCCTCTCGACCGACGGGATGAATGTTTTTTTTTTAAGTAAACAATGA
ATCGAAGATGGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTT
CAAACGGTATTCCTATACAGAGACGTAATGTTTATGTGGGCAGCAGAAGA
TTTTACGACATGTACAATGTGATGTGTGTATTTCTGTGTATCATCGATCG
TATTACGCCATGTACAATATGATGTGTGTATTTCTGTGTATCATCGATCT
CGTCTCCCTCCGCCGTTTCGTTCAATCAATGAACATATTTTATGTTGTCG
ATAGGTGAGCTTCGAGAGGTCCGACCTTGTCGAGAACGTGCGCGCCACCA
TGGTGGCGATCTCCAACCTCAAGCCCGAGATCATCAAGGGGAAGTACATC
TCGCAGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7527:2278..8237+

>mRNA_L-elsbetiae_contig7527.16418.1 ID=mRNA_L-elsbetiae_contig7527.16418.1|Name=mRNA_L-elsbetiae_contig7527.16418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig7527:2278..8237+ (Laminarionema elsbetiae ELsaHSoW15)
AAGTCCAAGAACAAGAAGAACCGCAAGTCGTCGCCGAGCCAGGCTCAGGC
GGCCGCTGCAGCCGCGCGGAGGCCCATGCACCCCATCGCCGAGGCTCTGG
ACCTGGTGAAGAGCGGCGCGAAGGCCAAGTTCGACGAGACTGTCGAGAAG
TCCAAGAACAAGAAGAACCGCAAGTCGTCGCCGAGCCAGGCTCAGGCGGC
CGCTGCAGCCGCGCGGAGGCCCATGCACCCCATCGCCGAGGCTCTGGACC
TGGTGAAGAGCGGCGCGAAGGCCAAGTTCGACGAGACTGTCGAGGTGGCT
ATGGTGCTGAATATTGACCCCCGGAAGGCGAACCAGACGGTCAGGGGCAC
CGTGCAGTTGCCCAGGGGTAGTGGCAAGTCGGTGGCTATGGTGCTGAATA
TTGACCCCCGGAAGGCGAACCAGACGGTCAGGGGCACCGTGCAGTTGCCC
AGGGGTAGTGGCAAGTCGGTTCGCGTGGCGGTTTTCGCGAAGGGAGAGGA
TGCGGCGGCGGCGACCGCGGCGGGGGCGGACATCGTTGGCGCCGACGATC
TCCTGGCGTCCATCATGGAAGGTTCGCGTGGCGGTTTTCGCGAAGGGAGA
GGATGCGGCGGCGGCGACCGCGGCGGGGGCGGACATCGTTGGCGCCGACG
ATCTCCTGGCGTCCATCATGGAAGGCAAGATCAACTTCGAGCGATGCGTA
GCCACGCCGGAGATGATGTCCCTCGTCGGCAGAGCGGCCAGGGTGCTGGG
CCCGCGGGGCCTCATGCCCAACGCTAAGGCAAGATCAACTTCGAGCGATG
CGTAGCCACGCCGGAGATGATGTCCCTCGTCGGCAGAGCGGCCAGGGTGC
TGGGCCCGCGGGGCCTCATGCCCAACGCTAAGGTTGGCAGCGTGACTAGG
GATGTGGCGGCGGCCGTCAAGGCGGCGAAGGGGGGGCAGGCGCAGTTCCG
GGCGGGGAAGAACGGGGTTCTGCACATCGGGGTCGGAAAGGTTGGCAGCG
TGACTAGGGATGTGGCGGCGGCCGTCAAGGCGGCGAAGGGGGGGCAGGCG
CAGTTCCGGGCGGGGAAGAACGGGGTTCTGCACATCGGGGTCGGAAAGGT
GAGCTTCGAGAGGTCCGACCTTGTCGAGAACGTGCGCGCCACCATGGTGG
CGATCTCCAACCTCAAGCCCGAGATCATCAAGGGGAAGTACATCTCGCAG
GTGGTGAGCTTCGAGAGGTCCGACCTTGTCGAGAACGTGCGCGCCACCAT
GGTGGCGATCTCCAACCTCAAGCCCGAGATCATCAAGGGGAAGTACATCT
CGCAGGTG
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