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Homology
BLAST of mRNA_L-elsbetiae_contig750.16398.1 vs. uniprot
Match: D7FII0_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI) HSP 1 Score: 181 bits (458), Expect = 1.260e-47 Identity = 216/538 (40.15%), Postives = 260/538 (48.33%), Query Frame = 1
Query: 1 MVPPENQKRGRSSSRSSSNLDAFPKRKMPTSTSTTSGVVDEVLVEICTPGARSAIHFVEGFSAS------RPWSGGXXXXXXXXXXXATRGRGRGLLSPTLFSRKPAASVPAASSFDTAGSVSAAAAASGKHHRRTASP-LDGVCLTLLGVSTGLKTPGVDTWAVAQALVDSSVDLRCRNVRGMTPLHLACSAGQVDVAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGEAVDTLSSPAETTPLHLSAGFSRLSCVHELLGRGADPSRRNKRGATPLDMVGTLIIPVDPDTDASXXXXXXKASAAREAFEKKLEQGSWVKVALARAQRWQRRRDAVLVWEALRKGAAGAXXXXXXXXXXXXPEGGSVGAPRKSRIERGGXXXXXXXXXXXXXXXXXXXXXAVVGGQGWLVAQLCMHPDEALMKSVILFL 1593
MVPP N+++ ++ D F +R +ST++ V +V++E CTPGARS I FV+ +A+ RP G G R + P L ++ S PA+S TA + A+ +GKHHRRT++P LDG LTLLGVS L TP D W VA+AL++S+ DLR RN RGMTPLHLACS G+VD A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DAGEAVD+ S+PA ELL RGADPSRRNKRGATPLDM G P+T + KA AREAFEKKL +G V++AL AQRWQR+R VLV E LRK A +GG++ + R+ER + V QGWLVAQLC+H D ALMK VI FL
Sbjct: 1 MVPPRNKQQS-----TTIGFDGFSQRSSCERSSTSTCGVGDVILEFCTPGARSPIDFVDATTAAAASCRGRPCGGNTTCY--------AHGSSRDVRPPVLLRQQ---SAPASS---TARPSAEASVYTGKHHRRTSTPPLDGARLTLLGVSKALNTPVQDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKASDLGTTALHNAGFTPLHVAARCGRLTALRALL----------------------------------------------------------DAGEAVDSPSTPAXXXXXXXXXXXXXXXXXXELLLRGADPSRRNKRGATPLDMGG-------PETMSG------KAKLAREAFEKKLAEGERVRLALTSAQRWQRKRGMVLVCETLRKRANAVLALADGAS-----DGGALAG--RERLER----DHGDTKRRFRRSLAGGSVASAVPSQGWLVAQLCVHADPALMKGVIEFL 437
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 189.5 |
Seed ortholog evalue | 4e-45 |
Seed eggNOG ortholog | 2880.D7FII0 |
KEGG ko | ko:K15503 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | response to abiotic stimulus |
EggNOG OGs | COG0666@1,KOG4177@2759 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01009,ko03400 |
Ec32 ortholog description | Ankyrin repeat-containing domain |
Ec32 ortholog | Ec-28_000350.1 |
Exons | 5 |
Model size | 1596 |
Cds size | 1596 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816834.1058528-CDS-L-elsbetiae_contig750:3204..3879 | 1622816834.1058528-CDS-L-elsbetiae_contig750:3204..3879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 3205..3879 - |
1691683848.5620563-CDS-L-elsbetiae_contig750:3204..3879 | 1691683848.5620563-CDS-L-elsbetiae_contig750:3204..3879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 3205..3879 - |
1622816834.1182508-CDS-L-elsbetiae_contig750:4427..4601 | 1622816834.1182508-CDS-L-elsbetiae_contig750:4427..4601 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 4428..4601 - |
1691683848.5756721-CDS-L-elsbetiae_contig750:4427..4601 | 1691683848.5756721-CDS-L-elsbetiae_contig750:4427..4601 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 4428..4601 - |
1622816834.1285286-CDS-L-elsbetiae_contig750:5147..5330 | 1622816834.1285286-CDS-L-elsbetiae_contig750:5147..5330 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 5148..5330 - |
1691683848.585811-CDS-L-elsbetiae_contig750:5147..5330 | 1691683848.585811-CDS-L-elsbetiae_contig750:5147..5330 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 5148..5330 - |
1622816834.1386573-CDS-L-elsbetiae_contig750:5945..6306 | 1622816834.1386573-CDS-L-elsbetiae_contig750:5945..6306 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 5946..6306 - |
1691683848.5981712-CDS-L-elsbetiae_contig750:5945..6306 | 1691683848.5981712-CDS-L-elsbetiae_contig750:5945..6306 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 5946..6306 - |
1622816834.1490574-CDS-L-elsbetiae_contig750:6363..6566 | 1622816834.1490574-CDS-L-elsbetiae_contig750:6363..6566 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 6364..6566 - |
1691683848.6065257-CDS-L-elsbetiae_contig750:6363..6566 | 1691683848.6065257-CDS-L-elsbetiae_contig750:6363..6566 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig750 6364..6566 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig750.16398.1 >prot_L-elsbetiae_contig750.16398.1 ID=prot_L-elsbetiae_contig750.16398.1|Name=mRNA_L-elsbetiae_contig750.16398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=532bp
MVPPENQKRGRSSSRSSSNLDAFPKRKMPTSTSTTSGVVDEVLVEICTPG ARSAIHFVEGFSASRPWSGGGGGGGGTSSGGATRGRGRGLLSPTLFSRKP AASVPAASSFDTAGSVSAAAAASGKHHRRTASPLDGVCLTLLGVSTGLKT PGVDTWAVAQALVDSSVDLRCRNVRGMTPLHLACSAGQVDVAKVLLLAGA DSHARDHRSRCPLHMAALSGSSELVTSLLACGADPNKASDVGTTALHNAA LLGRVEVSRALLMAGADANCADHNSFSPLYLASQNGHTHLVLDLLAAGAD AGIKTNRGFTPLHVAARCGRLPVLKALLDAGEAVDTLSSPAETTPLHLSA GFSRLSCVHELLGRGADPSRRNKRGATPLDMVGTLIIPVDPDTDASAGGG GGKASAAREAFEKKLEQGSWVKVALARAQRWQRRRDAVLVWEALRKGAAG AAAGAAADAVSDAPEGGSVGAPRKSRIERGGGDGGGGSKRCRRRRPQGRG GGAVVGGQGWLVAQLCMHPDEALMKSVILFL* back to topmRNA from alignment at L-elsbetiae_contig750:3205..6566- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig750.16398.1 ID=mRNA_L-elsbetiae_contig750.16398.1|Name=mRNA_L-elsbetiae_contig750.16398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3362bp|location=Sequence derived from alignment at L-elsbetiae_contig750:3205..6566- (Laminarionema elsbetiae ELsaHSoW15) ATGGTACCACCGGAAAACCAGAAGCGCGGAAGGAGCAGCAGCCGGAGCAG
CTCCAACCTCGACGCGTTTCCGAAGCGAAAGATGCCGACATCAACATCAA
CAACAAGCGGAGTCGTTGATGAGGTGCTTGTGGAGATCTGCACCCCCGGC
GCCCGATCGGCGATTCACTTCGTTGAGGGGTTCTCGGCATCTCGACCCTG
GAGGTCCCGCAACGGAAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCACCAGCAGCGGGGGCGGCGGCGGCGGCGGCGGCACCAGCAGCGGGGGC
GCCACCCGCGGCAGAGGGCGAGGTTTGCTCTCGCCGACCTTGTTCAGCCG
CAAGCCGGCGGCATCAGTGCCAGCAGCGTCATCGTTCGACACCGCCGGTA
GCGTTTCCGCCGCCGCCGCCGCCTCCGGCAAGCATCACCGCAGAACGGCG
TCGCCGCTGGACGGCGTGTGCCTGACGCTGCTGGGCGTGTCGACAGGGCT
CAAAACGCCCGGCGTCGACACGTGGGCGGTGGCCCAGGCGTTGGTGGACT
CCAGCGTCGATCTTCGCTGCAGAAACGTCAGGGGCATGACACCTCTCCAC
TTGGCCTGTTCTGCGGGACAGGTGAGGGACCTAAATATTTGAAATATTTA
ACGATTGGCGCTCACACGCAGACAGCTCAGAGAACTACCCCCCCCGTTTT
TATCTGTTTCCAGCCACTTATACATGGGTACAACAGCAGTCAGTAGTGTT
ATTTGGACTCATTTTTAAGGGGGCACATGTTGCCTGTCCCTTACCCGAGC
ACGAACGCGGCAAGACTATACCTGAGCCAGCAAATTACGGATGATTCAAA
TCGCATAAACGTACGTACGAAAAAAGTAGGAGTGTGCATACTCGGAGTAG
ATATCACTAACTGCTGCTGTCTCTCCCGGAAGTACACAGGTACTTCTACA
TACACAAATACATACGTGCAAGCACGTGGGGGGTACTTATTCCTTCTTCA
GTTGTCCGCGGAAAAAAAAACATAATGCGGGACACCTACCCTGCCGCCCT
CCCTTCCCAAATCTTACTCTCTCGCCCCCTCTCTTGTCTCTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCTGTCTACTACTCCT
ACTGCTGTGCGTGCACACCTCCTCTCCCCGTCTCAGGTTGACGTGGCAAA
GGTGCTCCTCCTGGCCGGCGCAGACTCGCACGCAAGGGACCACCGGTCGA
GGTGCCCGCTGCACATGGCGGCGCTGTCCGGAAGCTCGGAGCTGGTCACC
TCCTTGCTCGCGTGCGGAGCGGACCCCAACAAGGCCTCCGACGTGGGCAC
GACAGCTCTGCACAACGCGGTGAGTTATGTTTCTTCTTGTTCCTCGAGTC
GTGGGCGGGCGGGCGGGCGTGCTGGGCGTGGTGACTTGATGCCGGCGTGT
GTTTGTCCTCCCGGCTGACCGGCAGGTACAAGGTCCTGTAATATCGCTTG
AGAACGCCCCGGGGTGTAAGCATTTTTCGAAGCCGATTTGCTCCACAACC
GAGAGGGTATATACGATTGACAAAAATGTTAAATTTGGGAAGATCTCGAC
GAAATCCTTCCAACGGCGCATCGCTCGACAACAGCAACCCACCCGTTGCG
GAGAAAATTGGCTTTGAAAATTGTTTACACCCCGGGGCGTTCTCGAGGGA
TATTACGGTATGTAGATGCCCCTCGCAGCAGAAATAAATGTGCGTATCTC
CTTTTTTGCCAACAACTCGCAGCAAGAGTATTGCAGTCCATCCCTCTACA
CACACACACAAGAACGTCCGACTTTCTGACTGACTTCCGCATCTACGTGC
ATACCCCCTCTCCCCCGCTTGTCTTTTACTGGGCCACCCACGCCTTCCCT
CCAACTCTTCCGCAGGCGTTGCTCGGACGGGTGGAGGTGTCTCGGGCCCT
GCTTATGGCGGGTGCCGATGCGAACTGCGCCGACCACAACTCTTTCTCGC
CGCTGTACCTGGCCTCTCAAAACGGGCACACGCACCTCGTGCTCGACCTG
CTGGCCGCAGGAGCGGACGCGGGAATCAAGACCAACAGGGTGAGTTTTTG
GTTCGTGACGGCGTTCACGGAGGTTTGTTTTTGTGGGCCTGGGCCTGGGG
GGGGGGGGGGGGGGGGGGGGGGTTTACACCTCCGCTCACCCGAACCCCGT
CGGGGTAGGTTTTGGGGGGGAGAAAGTGGAAACCAACCCCCNNNNNNNNN
NAAAAGAACAGGGGTGGTGTTTTTTGTGGGGGGGGGGGTGCGGGGGGGTT
TTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTGGAGGTTT
TCAGCATGCTCGCACCGAGACCCCGTGGGGTTAAGTTTGGGTGCGAGAAA
ATGGTATAACAACCCCTGGGTACATATGCTGGACCACGCAAGGACGGCCA
AGATGCGTTTGCCGCAACTTGCTGCTCCTTGTACATAGAACCAGGCAACC
AACCACCCACCCCCCTACACAAACACTCACGCACGCACGCACGCACGCAC
AACCTGAAGACTAACTGAGGACAATCTGCCCCGCTCGTCGCTCCCACCCC
ACTCTCTGTTTTTTCTTTCTTGTCTTCGGCTCTCCAGGGATTCACCCCGC
TTCATGTTGCCGCTCGGTGTGGCCGGCTCCCGGTCCTCAAGGCCCTCCTG
GACGCGGGCGAGGCCGTCGACACGCTGTCCTCCCCCGCGGAGACCACCCC
GCTGCACCTCTCGGCCGGGTTCTCGCGGCTGAGCTGCGTGCACGAGCTTC
TCGGGCGCGGGGCCGACCCCTCCCGGCGGAACAAGCGCGGCGCGACGCCG
CTGGACATGGTGGGCACGCTCATCATCCCGGTCGACCCGGACACCGACGC
CAGCGCGGGCGGCGGCGGCGGCAAGGCCAGCGCCGCTCGGGAGGCGTTCG
AGAAGAAGCTGGAGCAGGGGTCGTGGGTCAAGGTCGCGCTGGCGAGGGCG
CAGAGGTGGCAACGGAGGCGGGACGCGGTGCTGGTGTGGGAAGCCCTCCG
TAAGGGTGCCGCCGGTGCCGCTGCCGGTGCCGCTGCGGACGCAGTCAGTG
ATGCGCCTGAGGGGGGAAGCGTTGGGGCACCGCGGAAGTCGCGGATCGAA
CGCGGTGGCGGCGACGGGGGCGGCGGCAGCAAGCGCTGCCGCCGCCGCCG
GCCGCAGGGGCGGGGCGGTGGGGCGGTGGTCGGCGGGCAAGGGTGGCTGG
TTGCGCAGCTTTGCATGCATCCCGACGAGGCTTTGATGAAGAGCGTTATT
CTGTTTTTGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig750:3205..6566- >mRNA_L-elsbetiae_contig750.16398.1 ID=mRNA_L-elsbetiae_contig750.16398.1|Name=mRNA_L-elsbetiae_contig750.16398.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3192bp|location=Sequence derived from alignment at L-elsbetiae_contig750:3205..6566- (Laminarionema elsbetiae ELsaHSoW15) ATGGTACCACCGGAAAACCAGAAGCGCGGAAGGAGCAGCAGCCGGAGCAG CTCCAACCTCGACGCGTTTCCGAAGCGAAAGATGCCGACATCAACATCAA CAACAAGCGGAGTCGTTGATGAGGTGCTTGTGGAGATCTGCACCCCCGGC GCCCGATCGGCGATTCACTTCGTTGAGGGGTTCTCGGCATCTCGACCCTG GAGATGGTACCACCGGAAAACCAGAAGCGCGGAAGGAGCAGCAGCCGGAG CAGCTCCAACCTCGACGCGTTTCCGAAGCGAAAGATGCCGACATCAACAT CAACAACAAGCGGAGTCGTTGATGAGGTGCTTGTGGAGATCTGCACCCCC GGCGCCCGATCGGCGATTCACTTCGTTGAGGGGTTCTCGGCATCTCGACC CTGGAGCGGGGGCGGCGGCGGCGGCGGCGGCACCAGCAGCGGGGGCGCCA CCCGCGGCAGAGGGCGAGGTTTGCTCTCGCCGACCTTGTTCAGCCGCAAG CCGGCGGCATCAGTGCCAGCAGCGTCATCGTTCGACACCGCCGGTAGCGT TTCCGCCGCCGCCGCCGCCTCCGGCAAGCATCACCGCAGAACGGCGTCGC CGCTGGACGGCGTGTGCCTGACGCTGCTGGGCGTGTCGACAGGGCTCAAA ACGCCCGGCGTCGACACGTGGGCGGTGGCCCAGGCGTTGGTGGACTCCAG CGTCGATCTTCGCTGCAGAAACGTCAGGGGCATGACACCTCTCCACTTGG CCTGTTCTGCGGGACAGCGGGGGCGGCGGCGGCGGCGGCGGCACCAGCAG CGGGGGCGCCACCCGCGGCAGAGGGCGAGGTTTGCTCTCGCCGACCTTGT TCAGCCGCAAGCCGGCGGCATCAGTGCCAGCAGCGTCATCGTTCGACACC GCCGGTAGCGTTTCCGCCGCCGCCGCCGCCTCCGGCAAGCATCACCGCAG AACGGCGTCGCCGCTGGACGGCGTGTGCCTGACGCTGCTGGGCGTGTCGA CAGGGCTCAAAACGCCCGGCGTCGACACGTGGGCGGTGGCCCAGGCGTTG GTGGACTCCAGCGTCGATCTTCGCTGCAGAAACGTCAGGGGCATGACACC TCTCCACTTGGCCTGTTCTGCGGGACAGGTTGACGTGGCAAAGGTGCTCC TCCTGGCCGGCGCAGACTCGCACGCAAGGGACCACCGGTCGAGGTGCCCG CTGCACATGGCGGCGCTGTCCGGAAGCTCGGAGCTGGTCACCTCCTTGCT CGCGTGCGGAGCGGACCCCAACAAGGCCTCCGACGTGGGCACGACAGCTC TGCACAACGCGGTTGACGTGGCAAAGGTGCTCCTCCTGGCCGGCGCAGAC TCGCACGCAAGGGACCACCGGTCGAGGTGCCCGCTGCACATGGCGGCGCT GTCCGGAAGCTCGGAGCTGGTCACCTCCTTGCTCGCGTGCGGAGCGGACC CCAACAAGGCCTCCGACGTGGGCACGACAGCTCTGCACAACGCGGCGTTG CTCGGACGGGTGGAGGTGTCTCGGGCCCTGCTTATGGCGGGTGCCGATGC GAACTGCGCCGACCACAACTCTTTCTCGCCGCTGTACCTGGCCTCTCAAA ACGGGCACACGCACCTCGTGCTCGACCTGCTGGCCGCAGGAGCGGACGCG GGAATCAAGACCAACAGGGCGTTGCTCGGACGGGTGGAGGTGTCTCGGGC CCTGCTTATGGCGGGTGCCGATGCGAACTGCGCCGACCACAACTCTTTCT CGCCGCTGTACCTGGCCTCTCAAAACGGGCACACGCACCTCGTGCTCGAC CTGCTGGCCGCAGGAGCGGACGCGGGAATCAAGACCAACAGGGGATTCAC CCCGCTTCATGTTGCCGCTCGGTGTGGCCGGCTCCCGGTCCTCAAGGCCC TCCTGGACGCGGGCGAGGCCGTCGACACGCTGTCCTCCCCCGCGGAGACC ACCCCGCTGCACCTCTCGGCCGGGTTCTCGCGGCTGAGCTGCGTGCACGA GCTTCTCGGGCGCGGGGCCGACCCCTCCCGGCGGAACAAGCGCGGCGCGA CGCCGCTGGACATGGTGGGCACGCTCATCATCCCGGTCGACCCGGACACC GACGCCAGCGCGGGCGGCGGCGGCGGCAAGGCCAGCGCCGCTCGGGAGGC GTTCGAGAAGAAGCTGGAGCAGGGGTCGTGGGTCAAGGTCGCGCTGGCGA GGGCGCAGAGGTGGCAACGGAGGCGGGACGCGGTGCTGGTGTGGGAAGCC CTCCGTAAGGGTGCCGCCGGTGCCGCTGCCGGTGCCGCTGCGGACGCAGT CAGTGATGCGCCTGAGGGGGGAAGCGTTGGGGCACCGCGGAAGTCGCGGA TCGAACGCGGTGGCGGCGACGGGGGCGGCGGCAGCAAGCGCTGCCGCCGC CGCCGGCCGCAGGGGCGGGGCGGTGGGGCGGTGGTCGGCGGGCAAGGGTG GCTGGTTGCGCAGCTTTGCATGCATCCCGACGAGGCTTTGATGAAGAGCG TTATTCTGTTTTTGTGAGGATTCACCCCGCTTCATGTTGCCGCTCGGTGT GGCCGGCTCCCGGTCCTCAAGGCCCTCCTGGACGCGGGCGAGGCCGTCGA CACGCTGTCCTCCCCCGCGGAGACCACCCCGCTGCACCTCTCGGCCGGGT TCTCGCGGCTGAGCTGCGTGCACGAGCTTCTCGGGCGCGGGGCCGACCCC TCCCGGCGGAACAAGCGCGGCGCGACGCCGCTGGACATGGTGGGCACGCT CATCATCCCGGTCGACCCGGACACCGACGCCAGCGCGGGCGGCGGCGGCG GCAAGGCCAGCGCCGCTCGGGAGGCGTTCGAGAAGAAGCTGGAGCAGGGG TCGTGGGTCAAGGTCGCGCTGGCGAGGGCGCAGAGGTGGCAACGGAGGCG GGACGCGGTGCTGGTGTGGGAAGCCCTCCGTAAGGGTGCCGCCGGTGCCG CTGCCGGTGCCGCTGCGGACGCAGTCAGTGATGCGCCTGAGGGGGGAAGC GTTGGGGCACCGCGGAAGTCGCGGATCGAACGCGGTGGCGGCGACGGGGG CGGCGGCAGCAAGCGCTGCCGCCGCCGCCGGCCGCAGGGGCGGGGCGGTG GGGCGGTGGTCGGCGGGCAAGGGTGGCTGGTTGCGCAGCTTTGCATGCAT CCCGACGAGGCTTTGATGAAGAGCGTTATTCTGTTTTTGTGA back to top
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