mRNA_L-elsbetiae_contig7481.16371.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7481.16371.1
Unique NamemRNA_L-elsbetiae_contig7481.16371.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7481.16371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7481contigL-elsbetiae_contig7481:1009..2355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size923
Cds size843
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7481.16371.1prot_L-elsbetiae_contig7481.16371.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7481 1088..2355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.892697-UTR-L-elsbetiae_contig7481:1008..10871622816831.892697-UTR-L-elsbetiae_contig7481:1008..1087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7481 1009..1087 -
1691683846.922031-UTR-L-elsbetiae_contig7481:1008..10871691683846.922031-UTR-L-elsbetiae_contig7481:1008..1087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7481 1009..1087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.906257-CDS-L-elsbetiae_contig7481:1087..11031622816831.906257-CDS-L-elsbetiae_contig7481:1087..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7481 1088..1103 -
1691683846.9334219-CDS-L-elsbetiae_contig7481:1087..11031691683846.9334219-CDS-L-elsbetiae_contig7481:1087..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7481 1088..1103 -
1622816831.9253235-CDS-L-elsbetiae_contig7481:1528..23551622816831.9253235-CDS-L-elsbetiae_contig7481:1528..2355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7481 1529..2355 -
1691683846.94246-CDS-L-elsbetiae_contig7481:1528..23551691683846.94246-CDS-L-elsbetiae_contig7481:1528..2355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7481 1529..2355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7481.16371.1

>prot_L-elsbetiae_contig7481.16371.1 ID=prot_L-elsbetiae_contig7481.16371.1|Name=mRNA_L-elsbetiae_contig7481.16371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
IGCSSPNNKALQPLARTLCELLPRAIQPCATVAEAVSFLRDIMADGKDRQ
LIINMSRALDALLTKLRSAYANRESTLLLPGDRHYQQIKEKIINKQAATS
GRQSGFTSSSSFELPREQVRRQHQRERRQERCSSPPRHGKHGDAGRRRHH
PPASSSSDTRRPRAAASSSHSSKKPDHRRLHRSPASSRSDSISLEEELES
ALPTGRPSHVMQPQKCQGSRAKQRADARQTDPKESSRARRLRRQRARADQ
GLSDESESNQSDTGGSSDGHSSMPDRSTNA*
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mRNA from alignment at L-elsbetiae_contig7481:1009..2355-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7481.16371.1 ID=mRNA_L-elsbetiae_contig7481.16371.1|Name=mRNA_L-elsbetiae_contig7481.16371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1347bp|location=Sequence derived from alignment at L-elsbetiae_contig7481:1009..2355- (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCTGCTCGTCTCCAAACAACAAGGCCCTACAACCCCTGGCGCGCAC
GCTGTGCGAACTCCTACCCCGAGCGATCCAGCCCTGCGCAACGGTCGCCG
AAGCAGTCAGTTTCCTTCGCGACATCATGGCGGACGGGAAGGACCGCCAG
CTGATCATCAACATGTCCCGGGCGCTGGATGCTTTACTCACCAAGCTCCG
GTCCGCGTACGCCAACCGCGAATCCACTCTTTTGCTGCCGGGCGACCGCC
ACTACCAGCAAATCAAGGAAAAAATCATCAACAAACAAGCTGCGACATCT
GGCCGTCAATCGGGTTTCACCTCGTCTTCGTCATTTGAACTGCCCAGGGA
ACAAGTGCGCCGTCAACACCAACGGGAGCGCCGCCAGGAGCGCTGCTCGT
CGCCGCCACGCCACGGCAAACACGGCGACGCGGGCCGCCGCCGACACCAT
CCACCTGCTTCATCGTCCTCTGACACACGGCGTCCAAGGGCCGCCGCATC
GTCATCGCACTCGTCAAAAAAGCCGGACCACCGCCGGTTACACAGGTCTC
CGGCGTCGTCAAGATCCGACAGCATTTCCCTCGAAGAAGAACTGGAATCG
GCGCTGCCTACCGGGCGACCTAGCCACGTCATGCAACCGCAAAAGTGCCA
GGGAAGCCGCGCCAAACAACGAGCCGACGCAAGACAAACCGACCCCAAAG
AAAGCAGCCGCGCCCGCCGACTCCGTCGTCAACGCGCTCGAGCTGATCAG
GGCCTTTCCGACGAATCGGAGAGCAACCAAAGCGACACAGGTGGCAGCTC
GGACGGCCACTCTTCCATGCCCGATAGGCAAGTCACTCCAAACCTAGACA
ACATCCCCGCCCGCCAACAACAACAATTGCTGCAGCATAATTGTGGTGGT
GACTTCAACACGATCCAGCAGGACCAACACAACGCCAAAGCGGAGATAGC
ACCCGTCACTAAGATTAAAGAAAAATACGCCAAAACGGACTTAAAACAAT
CCCCCGCATACAACCTTCCCTCTCCTTCAACAAAAACATTAAAGGCAGCC
AAGCAATCACGCAACTGCTCGACACCACCCAAACTGCATGGAAGAAATTA
TGTTGCAAGCAGATCCGTTGCTCGCCTTCCATACAGGGACATGGGTACGG
GGATGGGAACGGTACATCAAACGGGCCATCAAAGACTGCATCACCCCCAA
CACCTCCGATTCCGCCAATCTGCATGCGGTCTTCCACGGATTCTTTGAGC
AGGTCGACCAACGCCTGACGGAAGGAGCCAGCGGGTTCGACGCCTTCAAA
CATCTCCTGCAACTGGCGTCTTTGCAATTCGGAGACGAGGACAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7481:1009..2355-

>mRNA_L-elsbetiae_contig7481.16371.1 ID=mRNA_L-elsbetiae_contig7481.16371.1|Name=mRNA_L-elsbetiae_contig7481.16371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig7481:1009..2355- (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCTGCTCGTCTCCAAACAACAAGGCCCTACAACCCCTGGCGCGCAC
GCTGTGCGAACTCCTACCCCGAGCGATCCAGCCCTGCGCAACGGTCGCCG
AAGCAGTCAGTTTCCTTCGCGACATCATGGCGGACGGGAAGGACCGCCAG
CTGATCATCAACATGTCCCGGGCGCTGGATGCTTTACTCACCAAGCTCCG
GTCCGCGTACGCCAACCGCGAATCCACTCTTTTGCTGCCGGGCGACCGCC
ACTACCAGCAAATCAAGGAAAAAATCATCAACAAACAAGCTGCGACATCT
GGCCGTCAATCGGGTTTCACCTCGTCTTCGTCATTTGAACTGCCCAGGGA
ACAAGTGCGCCGTCAACACCAACGGGAGCGCCGCCAGGAGCGCTGCTCGT
CGCCGCCACGCCACGGCAAACACGGCGACGCGGGCCGCCGCCGACACCAT
CCACCTGCTTCATCGTCCTCTGACACACGGCGTCCAAGGGCCGCCGCATC
GTCATCGCACTCGTCAAAAAAGCCGGACCACCGCCGGTTACACAGGTCTC
CGGCGTCGTCAAGATCCGACAGCATTTCCCTCGAAGAAGAACTGGAATCG
GCGCTGCCTACCGGGCGACCTAGCCACGTCATGCAACCGCAAAAGTGCCA
GGGAAGCCGCGCCAAACAACGAGCCGACGCAAGACAAACCGACCCCAAAG
AAAGCAGCCGCGCCCGCCGACTCCGTCGTCAACGCGCTCGAGCTGATCAG
GGCCTTTCCGACGAATCGGAGAGCAACCAAAGCGACACAGGTGGCAGCTC
GGACGGCCACTCTTCCATGCCCGATAGATCGGCTGCTCGTCTCCAAACAA
CAAGGCCCTACAACCCCTGGCGCGCACGCTGTGCGAACTCCTACCCCGAG
CGATCCAGCCCTGCGCAACGGTCGCCGAAGCAGTCAGTTTCCTTCGCGAC
ATCATGGCGGACGGGAAGGACCGCCAGCTGATCATCAACATGTCCCGGGC
GCTGGATGCTTTACTCACCAAGCTCCGGTCCGCGTACGCCAACCGCGAAT
CCACTCTTTTGCTGCCGGGCGACCGCCACTACCAGCAAATCAAGGAAAAA
ATCATCAACAAACAAGCTGCGACATCTGGCCGTCAATCGGGTTTCACCTC
GTCTTCGTCATTTGAACTGCCCAGGGAACAAGTGCGCCGTCAACACCAAC
GGGAGCGCCGCCAGGAGCGCTGCTCGTCGCCGCCACGCCACGGCAAACAC
GGCGACGCGGGCCGCCGCCGACACCATCCACCTGCTTCATCGTCCTCTGA
CACACGGCGTCCAAGGGCCGCCGCATCGTCATCGCACTCGTCAAAAAAGC
CGGACCACCGCCGGTTACACAGGTCTCCGGCGTCGTCAAGATCCGACAGC
ATTTCCCTCGAAGAAGAACTGGAATCGGCGCTGCCTACCGGGCGACCTAG
CCACGTCATGCAACCGCAAAAGTGCCAGGGAAGCCGCGCCAAACAACGAG
CCGACGCAAGACAAACCGACCCCAAAGAAAGCAGCCGCGCCCGCCGACTC
CGTCGTCAACGCGCTCGAGCTGATCAGGGCCTTTCCGACGAATCGGAGAG
CAACCAAAGCGACACAGGTGGCAGCTCGGACGGCCACTCTTCCATGCCCG
ATAGGTCGACCAACGCCTGAGTCGACCAACGCCTGA
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