mRNA_L-elsbetiae_contig7479.16368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7479.16368.1
Unique NamemRNA_L-elsbetiae_contig7479.16368.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7479.16368.1 vs. uniprot
Match: D8LGT7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.080e-22
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 AGDDTKPGLHAHPEVQGAQHPRPEDWAPSYTSNVSH-IPTGSRSGPSVRSIGYA 162
            AG  T+PGLHAHPEVQGAQHPRPE+WAPSYTSN +  IPTGSRSGPSVRSIGYA
Sbjct:  228 AGASTEPGLHAHPEVQGAQHPRPENWAPSYTSNRNGAIPTGSRSGPSVRSIGYA 281
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7479.16368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGT7_ECTSI4.080e-2285.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7479contigL-elsbetiae_contig7479:9537..9701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001150.1
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.734134-CDS-L-elsbetiae_contig7479:9536..97011622816831.734134-CDS-L-elsbetiae_contig7479:9536..9701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 9537..9701 -
1691683846.8302581-CDS-L-elsbetiae_contig7479:9536..97011691683846.8302581-CDS-L-elsbetiae_contig7479:9536..9701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 9537..9701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7479.16368.1prot_L-elsbetiae_contig7479.16368.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7479 9537..9701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7479.16368.1

>prot_L-elsbetiae_contig7479.16368.1 ID=prot_L-elsbetiae_contig7479.16368.1|Name=mRNA_L-elsbetiae_contig7479.16368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
QAGDDTKPGLHAHPEVQGAQHPRPEDWAPSYTSNVSHIPTGSRSGPSVRS
IGYA*
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mRNA from alignment at L-elsbetiae_contig7479:9537..9701-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7479.16368.1 ID=mRNA_L-elsbetiae_contig7479.16368.1|Name=mRNA_L-elsbetiae_contig7479.16368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig7479:9537..9701- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGGCGATGACACCAAGCCCGGCCTGCATGCCCACCCGGAGGTGCA
AGGCGCGCAGCACCCGCGCCCCGAGGACTGGGCACCGTCGTACACCTCAA
ATGTTAGCCACATCCCCACGGGTTCCCGCTCGGGTCCCTCGGTTAGGTCC
ATAGGGTACGCATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7479:9537..9701-

>mRNA_L-elsbetiae_contig7479.16368.1 ID=mRNA_L-elsbetiae_contig7479.16368.1|Name=mRNA_L-elsbetiae_contig7479.16368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig7479:9537..9701- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGGCGATGACACCAAGCCCGGCCTGCATGCCCACCCGGAGGTGCA
AGGCGCGCAGCACCCGCGCCCCGAGGACTGGGCACCGTCGTACACCTCAA
ATGTTAGCCACATCCCCACGGGTTCCCGCTCGGGTCCCTCGGTTAGGTCC
ATAGGGTACGCATAACAGGCGGGCGATGACACCAAGCCCGGCCTGCATGC
CCACCCGGAGGTGCAAGGCGCGCAGCACCCGCGCCCCGAGGACTGGGCAC
CGTCGTACACCTCAAATGTTAGCCACATCCCCACGGGTTCCCGCTCGGGT
CCCTCGGTTAGGTCCATAGGGTACGCATAA
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