mRNA_L-elsbetiae_contig7474.16365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7474.16365.1
Unique NamemRNA_L-elsbetiae_contig7474.16365.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7474.16365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7474contigL-elsbetiae_contig7474:1303..2277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7474.16365.1prot_L-elsbetiae_contig7474.16365.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7474 1303..2266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.5120127-CDS-L-elsbetiae_contig7474:1302..15351622816831.5120127-CDS-L-elsbetiae_contig7474:1302..1535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7474 1303..1535 -
1691683846.6757681-CDS-L-elsbetiae_contig7474:1302..15351691683846.6757681-CDS-L-elsbetiae_contig7474:1302..1535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7474 1303..1535 -
1622816831.524106-CDS-L-elsbetiae_contig7474:2172..22661622816831.524106-CDS-L-elsbetiae_contig7474:2172..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7474 2173..2266 -
1691683846.6871624-CDS-L-elsbetiae_contig7474:2172..22661691683846.6871624-CDS-L-elsbetiae_contig7474:2172..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7474 2173..2266 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.5348308-UTR-L-elsbetiae_contig7474:2266..22771622816831.5348308-UTR-L-elsbetiae_contig7474:2266..2277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7474 2267..2277 -
1691683846.7003784-UTR-L-elsbetiae_contig7474:2266..22771691683846.7003784-UTR-L-elsbetiae_contig7474:2266..2277Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7474 2267..2277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7474.16365.1

>prot_L-elsbetiae_contig7474.16365.1 ID=prot_L-elsbetiae_contig7474.16365.1|Name=mRNA_L-elsbetiae_contig7474.16365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MDAVYSHPPRSCSQPRDKPIPEGGPGKAAGLARGRKSARREHAKGRRGPN
ENDTPASSLAGCSTAGATPPRGAGSGRPTQFYRRPRLAGVAQDWGAMYER
GPHRWRGN*
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mRNA from alignment at L-elsbetiae_contig7474:1303..2277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7474.16365.1 ID=mRNA_L-elsbetiae_contig7474.16365.1|Name=mRNA_L-elsbetiae_contig7474.16365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=975bp|location=Sequence derived from alignment at L-elsbetiae_contig7474:1303..2277- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAAATTCGATGGACGCGGTTTATTCTCACCCCCCCCGGTCGTGCTCA
CAACCGCGGGACAAGCCGATTCCAGAGGGTGGACCGGGGAAAGCGGCAGG
ATTAGGTATGTGCGGGGGTGGGGTGTGTGTTGGGGCAGCGCTTGCTTGTT
GTAGGTCGAGATTGTTGGCTGACGACGGCGGTGGTCGAACGCGCCGCACC
CGTTGCTGTTCTTGCTGGCTCTGCTCCACTCTGTGCCTCCACCCGGGCGT
GTGCGACTTGTTTATGAATGGTTGTTGTATTTTGTCTTTTGGGCCAGTGT
CTTTGTCTCCCCTGGCTCAGGGCATTATTATAAAAACATGCGTTGTTGTG
CGTTGTCTCGATTTGTGTCGGTGATGGCCGCCGGTGCCAACTGCTCGGCT
CTGACGGGCTACATACTATTTGTGAAGTACCAGTGCAGCAGTAGCCATCT
TCCGAAATGCGATGTGTTCCTATTTTGAAGTAGATGACAACATTACGGCA
TCACGGTCTGGGCTCTACCCGCTGAAAAATTGTTGGCCGACCTCGCAAAT
CTAAATCTTTTGCAGGGGAGATGTTGAATTCTTCTGATATTTAGGTTGTT
TTTTCTGCTCGCTTCGCCAAATATTACGTCATCTGTATGGAATACCGTTT
GAACCCCATGTCGAGTCTTTGCTCTAGTATGGGTTAGATCCCATCTTTGA
TTCTTTGTCTTATTTTAAAGACACCCCAACCGCTCCCTGCAGCCCGAGGA
AGGAAAAGCGCGAGGCGAGAGCACGCAAAAGGCCGACGAGGTCCGAATGA
AAATGACACGCCTGCCTCCTCCCTGGCGGGTTGCAGCACAGCCGGAGCCA
CACCCCCTCGCGGCGCAGGCTCCGGCCGGCCCACGCAGTTCTACAGAAGG
CCGAGGCTGGCGGGCGTCGCGCAAGATTGGGGAGCTATGTACGAGAGAGG
CCCGCATCGGTGGAGAGGAAACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7474:1303..2277-

>mRNA_L-elsbetiae_contig7474.16365.1 ID=mRNA_L-elsbetiae_contig7474.16365.1|Name=mRNA_L-elsbetiae_contig7474.16365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7474:1303..2277- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCGGTTTATTCTCACCCCCCCCGGTCGTGCTCACAACCGCGGGA
CAAGCCGATTCCAGAGGGTGGACCGGGGAAAGCGGCAGGATTAGATGGAC
GCGGTTTATTCTCACCCCCCCCGGTCGTGCTCACAACCGCGGGACAAGCC
GATTCCAGAGGGTGGACCGGGGAAAGCGGCAGGATTAGCCCGAGGAAGGA
AAAGCGCGAGGCGAGAGCACGCAAAAGGCCGACGAGGTCCGAATGAAAAT
GACACGCCTGCCTCCTCCCTGGCGGGTTGCAGCACAGCCGGAGCCACACC
CCCTCGCGGCGCAGGCTCCGGCCGGCCCACGCAGTTCTACAGAAGGCCGA
GGCTGGCGGGCGTCGCGCAAGATTGGGGAGCTATGTACGAGAGAGGCCCG
CATCGGTGGAGAGGAAACTGACCCGAGGAAGGAAAAGCGCGAGGCGAGAG
CACGCAAAAGGCCGACGAGGTCCGAATGAAAATGACACGCCTGCCTCCTC
CCTGGCGGGTTGCAGCACAGCCGGAGCCACACCCCCTCGCGGCGCAGGCT
CCGGCCGGCCCACGCAGTTCTACAGAAGGCCGAGGCTGGCGGGCGTCGCG
CAAGATTGGGGAGCTATGTACGAGAGAGGCCCGCATCGGTGGAGAGGAAA
CTGA
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