mRNA_L-elsbetiae_contig7471.16361.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7471.16361.1
Unique NamemRNA_L-elsbetiae_contig7471.16361.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7471.16361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7471contigL-elsbetiae_contig7471:7511..7952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7471.16361.1prot_L-elsbetiae_contig7471.16361.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7471 7539..7952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.1907086-UTR-L-elsbetiae_contig7471:7510..75381622816831.1907086-UTR-L-elsbetiae_contig7471:7510..7538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7471 7511..7538 +
1691683846.4492018-UTR-L-elsbetiae_contig7471:7510..75381691683846.4492018-UTR-L-elsbetiae_contig7471:7510..7538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7471 7511..7538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.2016-CDS-L-elsbetiae_contig7471:7538..75541622816831.2016-CDS-L-elsbetiae_contig7471:7538..7554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7539..7554 +
1691683846.4634748-CDS-L-elsbetiae_contig7471:7538..75541691683846.4634748-CDS-L-elsbetiae_contig7471:7538..7554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7539..7554 +
1622816831.2127733-CDS-L-elsbetiae_contig7471:7725..79521622816831.2127733-CDS-L-elsbetiae_contig7471:7725..7952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7726..7952 +
1691683846.4785745-CDS-L-elsbetiae_contig7471:7725..79521691683846.4785745-CDS-L-elsbetiae_contig7471:7725..7952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7726..7952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7471.16361.1

>prot_L-elsbetiae_contig7471.16361.1 ID=prot_L-elsbetiae_contig7471.16361.1|Name=mRNA_L-elsbetiae_contig7471.16361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MDISRVQVTPSRPKTPRSAVQESEAAGALSASTPTQVAVLWQTPRRKSTD
GTSTPQRCSSKNKTDSKCSSSSSSSSSVRKA
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mRNA from alignment at L-elsbetiae_contig7471:7511..7952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7471.16361.1 ID=mRNA_L-elsbetiae_contig7471.16361.1|Name=mRNA_L-elsbetiae_contig7471.16361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=442bp|location=Sequence derived from alignment at L-elsbetiae_contig7471:7511..7952+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTGACAGCAGGTGAAGAATTGGAAACATGGACATCAGCCGCGGTGAGT
CGATGTACCTTGTCTTGCTGAGACGCTTGGTTTCCGTAGCAAACTACTGG
TATACGTGTTGGGGGGGGAGAGTATATGGCTGCTGAAAAGCACCAACGGC
AATCTTGTCTCCTCCACCTCTCTTGCCCCTCTATGTGCCTGGTGCCCACC
CTGATCGACCAACAGTACAAGTAACCCCTTCGAGACCAAAGACACCCAGG
AGTGCTGTGCAAGAGTCAGAAGCTGCGGGTGCTCTGTCGGCTTCGACACC
GACCCAAGTTGCAGTTTTGTGGCAAACACCCCGCAGAAAGTCGACCGACG
GCACGAGTACGCCGCAGCGGTGTTCTAGCAAGAACAAGACCGACAGCAAG
TGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTAAGGAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7471:7511..7952+

>mRNA_L-elsbetiae_contig7471.16361.1 ID=mRNA_L-elsbetiae_contig7471.16361.1|Name=mRNA_L-elsbetiae_contig7471.16361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7471:7511..7952+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCAGCCGCGATGGACATCAGCCGCGTACAAGTAACCCCTTCGA
GACCAAAGACACCCAGGAGTGCTGTGCAAGAGTCAGAAGCTGCGGGTGCT
CTGTCGGCTTCGACACCGACCCAAGTTGCAGTTTTGTGGCAAACACCCCG
CAGAAAGTCGACCGACGGCACGAGTACGCCGCAGCGGTGTTCTAGCAAGA
ACAAGACCGACAGCAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTA
AGGAAGGCGTACAAGTAACCCCTTCGAGACCAAAGACACCCAGGAGTGCT
GTGCAAGAGTCAGAAGCTGCGGGTGCTCTGTCGGCTTCGACACCGACCCA
AGTTGCAGTTTTGTGGCAAACACCCCGCAGAAAGTCGACCGACGGCACGA
GTACGCCGCAGCGGTGTTCTAGCAAGAACAAGACCGACAGCAAGTGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGTAAGGAAGGCG
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