mRNA_L-elsbetiae_contig7465.16356.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7465.16356.1
Unique NamemRNA_L-elsbetiae_contig7465.16356.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7465.16356.1 vs. uniprot
Match: A0A6H5K305_9PHAE (Phosphatidate cytidylyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K305_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-18
Identity = 69/107 (64.49%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:  314 RLLGLAGRMRAGASTATAAAAVAAGATERP--AFNLPGGAGGAAEGINAGGGA---LGAP---KKKGDLGVRTRSTLILVGSFLAIIVKLKQTGCAILVAFLQWAVF 610
            R+L L GR+RAG S AT    VA GAT     A   PGG   A+ G +AG GA   LG     K KGDLGVRTRSTLILVGSFL IIVKLKQTGCAILVAFLQWA+F
Sbjct:   51 RVLPLVGRLRAGGSAAT----VAGGATSAAELADTPPGGGISASGGASAGDGAGVALGRKPETKPKGDLGVRTRSTLILVGSFLTIIVKLKQTGCAILVAFLQWAIF 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7465.16356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K305_9PHAE2.100e-1864.49Phosphatidate cytidylyltransferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7465contigL-elsbetiae_contig7465:3450..8407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size614
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7465.16356.1prot_L-elsbetiae_contig7465.16356.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7465 3450..8405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.9261792-CDS-L-elsbetiae_contig7465:3449..37311622816830.9261792-CDS-L-elsbetiae_contig7465:3449..3731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 3450..3731 +
1691683846.2672825-CDS-L-elsbetiae_contig7465:3449..37311691683846.2672825-CDS-L-elsbetiae_contig7465:3449..3731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 3450..3731 +
1622816830.9396267-CDS-L-elsbetiae_contig7465:4871..50791622816830.9396267-CDS-L-elsbetiae_contig7465:4871..5079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 4872..5079 +
1691683846.2773092-CDS-L-elsbetiae_contig7465:4871..50791691683846.2773092-CDS-L-elsbetiae_contig7465:4871..5079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 4872..5079 +
1622816830.9517965-CDS-L-elsbetiae_contig7465:8283..84051622816830.9517965-CDS-L-elsbetiae_contig7465:8283..8405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 8284..8405 +
1691683846.28605-CDS-L-elsbetiae_contig7465:8283..84051691683846.28605-CDS-L-elsbetiae_contig7465:8283..8405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7465 8284..8405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7465.16356.1

>prot_L-elsbetiae_contig7465.16356.1 ID=prot_L-elsbetiae_contig7465.16356.1|Name=mRNA_L-elsbetiae_contig7465.16356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
GEEGEYSPSSLSRARRETQKNQVSTLCTTGQNPKTLRVEPSCSGRHNDVS
AGVEHVSSVSPSVGTCHFASDRIAVGNPRSRGCGVAISPATSIYRLSGFS
ERAGAAAGSRRPHESGGLYGYGCGGGGGRGDRTSGLQPARRGRGCRGGNQ
RGGRRARGSQEEGGPGRKNEKYTDPRGVFSGYHREAEADGVRHPGGVSAV
GGLQ
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mRNA from alignment at L-elsbetiae_contig7465:3450..8407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7465.16356.1 ID=mRNA_L-elsbetiae_contig7465.16356.1|Name=mRNA_L-elsbetiae_contig7465.16356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4958bp|location=Sequence derived from alignment at L-elsbetiae_contig7465:3450..8407+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGAGGGAGAATACTCGCCGAGCTCTTTGAGCAGGGCAAGAAGGGA
GACTCAGAAAAACCAAGTTTCTACCCTTTGCACAACAGGACAGAATCCGA
AAACCCTACGGGTTGAACCAAGCTGCTCGGGCAGGCACAACGACGTGTCT
GCGGGGGTGGAGCATGTCTCGTCGGTTAGCCCCTCGGTGGGCACTTGCCA
CTTTGCTTCTGACCGCATCGCCGTGGGAAACCCGCGCAGCCGAGGGTGTG
GCGTCGCCATTTCTCCAGCAACATCAATATATGTGAGCGAGCTCCTCGTG
CTGCAGCAGCCAAGAGTTGACAGTCCCGTGGGATCATATAGGAGTATAAA
GTTGGTGTTAGTTTGCTGTTGCTGTGTGTTCTCGGTGGCTGGGGTGCAGT
CGATGGGCCCCTTCGTCCGTTGACCTTGACCCATGCAGCTGCAGCCTCCT
GCTGCGGAGGAATGTTGGCAGTTATGCCAGCAGGAACAGCAGTAGTTAGG
CTACGGTAGGTACCTACTACCCCTTCTGATCCAGCTTTTAAATACCAGTG
ACCTCTGAGTCGAGCAAATGTACGATGTACTACATACATATCTGCGTATG
TACATTCTAGCAGGCAGATCACGGGTTCAATTCCCGGCGGGAGCGACTTC
TGGTCGAAAAAAGGGAGTTGTTCCTCTCGCTTTCGTCTCTTGTCGGTTGA
TAACGCTTACCGGTATATACATAGCGCGTGTACCGTAGGTGAAACAAGAT
ACCACACCCCTTGGACAGGTTTTCAAAGCTCGATTCCTCCCCAGCAAGGA
GAGTGCCAGTGCCGAAAGGGGTGGCGTTGGAAAGATCTAGTCCAGGGCTG
TCCGAAAATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGGGTAATG
GAGCTCTAAAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGT
ACACAAAAACTTCGACCTCACCGCCGACGAGGAAAAGGAACAGCTGAACT
CTTCTCGCGATGAAAACAACTTCTAGGCTTGAAGCACCGCAGAAGGTGGG
AGTGGGGGCCTCGGGGAGAGGAGCCCTCCTGTGTGACCACGGTTCAGTAC
TCGCTGGCAAGATGTGAAAGTGGCACTAGGAGCCATCGGCACTGGAAATA
AATGTGAAGCACGTTGACATGTACCATACATAACATAGCATACGTGCGCA
CGAGAACCCAGAAATGCGTGTCGGCAACAACCCCAACAGCAGCAGTGCGC
GCCTGTTGATCTCGAGAGCAAAGCCTAGATCGGTTCGAGGAGTGACGGAA
AAAAAGTAGTTGGCACATCATCTAGCTCTTCGAATGAACACACACACACA
TCAAATTAAGCATCCCCATCTCCTGCCCCTTTTTTTCGAAACGGACCGGT
TACAAAATGCTGCCCCGAAAAGCGGTTGTCCGGCTTCTCCGAGCGAGCCG
GGGCGGCTGCTGGGTCTCGCCGGCCGCATGAGAGCGGGGGCCTCTACGGC
TACGGCTGCGGCGGCGGTGGCGGCAGGGGCGACAGAACGTCCGGCCTTCA
ACCTGCCCGGAGGGGCCGGGGGTGCCGCGGAGGGAATCAACGCGGGGGGC
GGCGCGCTAGGGGCTCCCAAGAAGAAGGGGGTGAGGGGGTTTCGGAGGGG
AAGGAGGGTCCTGGTGATTTGTACTTTTGTGTTGCTTGTGCCCCCCCAAC
CTTGCTGAAGCTGAACATTTTTTTAAGCTGGGGGGTATGTGTGTGTGGTG
CACGTGACGTGTGTTCGTCGGGATTATATCATAGCCGAACGGATACAAGC
ATTTATTTGGAACCAGTGGCGAGGCCTGCTTTTTTTTTGTCGGTGGCCCG
GTGGCTTCTGCATGCAGTACTTATTCGCTCTGACTGCGCTTCGCAGGCGC
ACCAGCCCTGACCGTGTTTCTCTCGGGGGGGGGCGTCGTGAATCCCGGTT
GAAACGCTACCGTAGGTGGCAAGAGATACCGCACCCCCTGGACCGAGTTT
TAGAGTTCCATTGCTCCGTAACTAACGAAGAGAGTGGCAGCACTAATCGA
CACGTTTTCGGACAGCCCTCCGCTATAGATATTTTATCTTTCCAACGCCA
CACCCCTTTCGGCACTGGGACTCTTCTTGCTGGAGAGGAATCGAGCTCTG
AAAATCTGTCCAGGGGGTGTATTATCTTGTGTCATCTACGGTACCCCCCT
CCACGCAAACGAGAGAAGACCCAAGCGCACCATGCACGCAAAATCACCGC
AAGGCTGAGCACCATTTAATATGATCACCGTGCCTAACGCGCCTAGAACA
AGCAACCTGGTTCTGCGTAGATGAGAACGGCGGGCTTCTCGTTGCAAAAA
CTAATTGTGTAGAGAGAGACGTGGTCGACCAATGGCGGGAGGAGGTGAGC
CGAGCGTGGCAATTACTTCGCTGCTTGAAGCACACGGGGGGGGGGCGGGG
TGTGCATGTATGCGGCTCGATTTCTGGTGGGTTTGTCTTGACCCTTTGTA
CATACACGTCACATTGGCCAGGCCTCCGATCAACATTGCTGCGGTCATTT
CCCTGGGTTTTATGTAGCCCTTTGCTGGTCTCACCTGATGTCTGAACAAC
TCAGCAAGGCGGTTGAGATCCTCGTGCTCAAGGTTGGTTGCAGTTGCTGT
TTTGTGTGAGGGCAAAGTGGTGGTCTACCGCTTTCGGCATTTCCCCGGTC
ACCCTTCCCTGTAGGAGTACGTTTTGGGCTTTTGGCTCTGGACCCCGCCC
ACGCGGCTGGTATGCGAACCCTTATCTACTACTGTGTGCTGAATAGGTCA
AGCCTTGACGGGTCCCCACACTCAAGCTCCCCCCCCCCCCCCCCCCCCCC
CCCCCCAAATGCCAAACAAAACCAGGACGGGGAAAAAGTAAAAGTTGTAA
AGGCCCCCCCCCCCCCCCCCGCCCGAGTAAAGCGAAGAGCGCGAATAGTG
CCCGGACGGTAGCCTCTTGTAGGGGGGGGAGGGGGTAGGAAAGCCGCGCC
CCGTGAATGAGAAGTGTCTCGGAAAACAAAAAAGGGTATCTTACCGTCAC
ATGCATAGTATTCCCCAATTCCAAATCACTCAGCTAATCCTCTAGTTACT
CATACGCCGTGTACTAACTACATACCTCTCGACATTTTTTTTTTGTGTCA
TACGGAAGTTATCATACCCACACTACTATTTCCCAACACATCATACTACA
CACCACCCTTCCCAATCCTGATTATTGTCTTGTCACTACCACTAATATTG
TATTTTCTCCTCTAAAGCAGTAACCCACATATATTAAACCAGCATTTTGA
TTTAGTTCAACAATGCGATGTGTTCCTATTTTGAAGTAGATGACAACATT
ACGGCATTCACGGTGGGCTCTACCCGCCGGAATAATTGTTGGCCGACCTC
GCAAATCTTAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTTG
GTTGTTTTTCTGCTCGCTTCGCCAAATATTACGTCTCTGCATGGAATACC
GTTTGAACCCCATATCGAGTCTATGCTCTAGTGTGGGTAGGTTCCATCTT
TGATTCTTTGTTTATTTAGAAAAAAGGTGCGTAGGTACGTCAAACGTCAA
AAAGACACGTGCGGCAAAGCAGCCACCCGCACGCACTTTTGAAACCATCT
GGTGGAGAACGAACACTCTAATAGCCCTTCTGTTCGCCCAGCCCTTTCGT
TGTCGCACCTCTCTACAATCATTGCTTGGCATACATTCATTTACTGTTCG
CGAATCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAACACAGCAACAAA
CATAGGTATTAAATCTATTTCAATTTACAATTATTCCTAGCGTCGCTCCC
TGTCATCGCTGTGGTGGCTTCATTTGGTTCTCCGTCCGGAATTCTGAAAA
TTGCGGTCTGCATCCTTTCATCCGCTTTCTCTAAATACTCTCTTTCTCTT
CCGAGGTGCGGCTACCTGCAGTGCACTTCACAGTGCATTCGAGCATTCGC
TTCTCTCTCTTATCTCTCTCTCCCTCTCCCTCTCCCTTCTCTCTCAGTGT
CTTTCTCTCTCTCTGGTTGTCTCTCTTTTTCTCGGCGCATTTCGTCTGAG
AGGGCTCTTGTCTCTTATTTCCACCCGGAAAAAACTCTCGGCGTTGCTAC
CCCGAGGCGTCCCTCGCGTGCGTCTGTGCATTGCTACTCGTGCTTCCCCC
TATGCTACTCGCGCTTTCCCTACTGTGGTTTAAACCCTTCTCTCTTATGA
GAGCGGTGGACTCTCTATTGAGCTATCTATGTATCTGACTACGTACTTTT
CTACATCTACCGAACAGTTCTTTTTTTTGGAAATTTGGCTCTCGCTTGAA
ACTCCGCTATTATTCGCCGAGATGGTGAACGCGCCGAAGGGGTCAACTGC
GAGCCGACTGCTAGCAACTGTGTAGATATGTAGATGTGTAGCTATGGGTA
CCCTGCGAGGCACTCTGTGTATGCGTATTGTTGAGCCCGCGGGTACACTC
GCAGCAGCGTCCGTCAATACAAGGAGGAGGGCAGTTATCTTGCACATCCT
TCATGTCACTCCATGGTATCCTCCTGCTGACGTGCTTTTCGGAAGTGTAT
GTAAGTATATCTAGATCTCTATAAACATCTAGGTACGAAGTTCATTAAAG
TAGATGTTAAAAAAACAACTGCTGTTTGTGTTTTCCAATTACACTCTACA
ATACCTTGGATGCGCTTACAATACAAGCGGGGGCGCGTGCTAGCGCCCAA
AACCTTGTATGTATCCGCATATCCGCCTTACTTGTCCACGCCAACAACAA
CAACAACCGCGTTTGTTTCCGTCCCTGGGTGCAGGACCTGGGCGTAAGAA
CGAGAAGTACACTGATCCTCGTGGGGTCTTTTCTGGCTATCATCGTGAAG
CTGAAGCAGACGGGGTGCGCCATCCTGGTGGCGTTTCTGCAGTGGGCGGT
CTTCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7465:3450..8407+

>mRNA_L-elsbetiae_contig7465.16356.1 ID=mRNA_L-elsbetiae_contig7465.16356.1|Name=mRNA_L-elsbetiae_contig7465.16356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig7465:3450..8407+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGAGGGAGAATACTCGCCGAGCTCTTTGAGCAGGGCAAGAAGGGA
GACTCAGAAAAACCAAGTTTCTACCCTTTGCACAACAGGACAGAATCCGA
AAACCCTACGGGTTGAACCAAGCTGCTCGGGCAGGCACAACGACGTGTCT
GCGGGGGTGGAGCATGTCTCGTCGGTTAGCCCCTCGGTGGGCACTTGCCA
CTTTGCTTCTGACCGCATCGCCGTGGGAAACCCGCGCAGCCGAGGGTGTG
GCGTCGCCATTTCTCCAGCAACATCAATATATGGAGAGGAGGGAGAATAC
TCGCCGAGCTCTTTGAGCAGGGCAAGAAGGGAGACTCAGAAAAACCAAGT
TTCTACCCTTTGCACAACAGGACAGAATCCGAAAACCCTACGGGTTGAAC
CAAGCTGCTCGGGCAGGCACAACGACGTGTCTGCGGGGGTGGAGCATGTC
TCGTCGGTTAGCCCCTCGGTGGGCACTTGCCACTTTGCTTCTGACCGCAT
CGCCGTGGGAAACCCGCGCAGCCGAGGGTGTGGCGTCGCCATTTCTCCAG
CAACATCAATATATCGGTTGTCCGGCTTCTCCGAGCGAGCCGGGGCGGCT
GCTGGGTCTCGCCGGCCGCATGAGAGCGGGGGCCTCTACGGCTACGGCTG
CGGCGGCGGTGGCGGCAGGGGCGACAGAACGTCCGGCCTTCAACCTGCCC
GGAGGGGCCGGGGGTGCCGCGGAGGGAATCAACGCGGGGGGCGGCGCGCT
AGGGGCTCCCAAGAAGAAGGGGCGGTTGTCCGGCTTCTCCGAGCGAGCCG
GGGCGGCTGCTGGGTCTCGCCGGCCGCATGAGAGCGGGGGCCTCTACGGC
TACGGCTGCGGCGGCGGTGGCGGCAGGGGCGACAGAACGTCCGGCCTTCA
ACCTGCCCGGAGGGGCCGGGGGTGCCGCGGAGGGAATCAACGCGGGGGGC
GGCGCGCTAGGGGCTCCCAAGAAGAAGGGGGACCTGGGCGTAAGAACGAG
AAGTACACTGATCCTCGTGGGGTCTTTTCTGGCTATCATCGTGAAGCTGA
AGCAGACGGGGTGCGCCATCCTGGTGGCGTTTCTGCAGTGGGCGGTCTTC
AGGACCTGGGCGTAAGAACGAGAAGTACACTGATCCTCGTGGGGTCTTTT
CTGGCTATCATCGTGAAGCTGAAGCAGACGGGGTGCGCCATCCTGGTGGC
GTTTCTGCAGTGGGCGGTCTTCAG
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