mRNA_L-elsbetiae_contig7464.16355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7464.16355.1
Unique NamemRNA_L-elsbetiae_contig7464.16355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7464.16355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7464contigL-elsbetiae_contig7464:6570..8104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size413
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7464.16355.1prot_L-elsbetiae_contig7464.16355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7464 6570..7469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.8595908-CDS-L-elsbetiae_contig7464:6569..66921622816830.8595908-CDS-L-elsbetiae_contig7464:6569..6692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 6570..6692 +
1691683846.2213902-CDS-L-elsbetiae_contig7464:6569..66921691683846.2213902-CDS-L-elsbetiae_contig7464:6569..6692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 6570..6692 +
1622816830.8721907-CDS-L-elsbetiae_contig7464:7424..74691622816830.8721907-CDS-L-elsbetiae_contig7464:7424..7469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 7425..7469 +
1691683846.2301068-CDS-L-elsbetiae_contig7464:7424..74691691683846.2301068-CDS-L-elsbetiae_contig7464:7424..7469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 7425..7469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.8839877-UTR-L-elsbetiae_contig7464:7469..76471622816830.8839877-UTR-L-elsbetiae_contig7464:7469..7647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7464 7470..7647 +
1691683846.2383056-UTR-L-elsbetiae_contig7464:7469..76471691683846.2383056-UTR-L-elsbetiae_contig7464:7469..7647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7464 7470..7647 +
1622816830.8940487-UTR-L-elsbetiae_contig7464:8037..81041622816830.8940487-UTR-L-elsbetiae_contig7464:8037..8104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7464 8038..8104 +
1691683846.246732-UTR-L-elsbetiae_contig7464:8037..81041691683846.246732-UTR-L-elsbetiae_contig7464:8037..8104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7464 8038..8104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7464.16355.1

>prot_L-elsbetiae_contig7464.16355.1 ID=prot_L-elsbetiae_contig7464.16355.1|Name=mRNA_L-elsbetiae_contig7464.16355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
ASTRAPAGGGATWAEYDLQKDCQRAALGILTSLASRHPGNQARKAESPGK
RRHSE*
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mRNA from alignment at L-elsbetiae_contig7464:6570..8104+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7464.16355.1 ID=mRNA_L-elsbetiae_contig7464.16355.1|Name=mRNA_L-elsbetiae_contig7464.16355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1535bp|location=Sequence derived from alignment at L-elsbetiae_contig7464:6570..8104+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGACTCGCGCCCCCGCGGGCGGCGGGGCCACGTGGGCGGAGTACGA
CCTGCAGAAGGACTGCCAGAGAGCCGCGCTGGGGATACTGACAAGCCTGG
CCTCCAGGCACCCGGGGAATCAGGTATTATGCGCTCGTGTCTCGTGTCCT
CATGTCTGCTGGTTGGGTGCTGAGGTTGTTGGTGTTGTCACGTCAGCCGA
GATATTATGGCGGCCCCGGTTTCTGGCCCAGAGTGGCTGGCACCCAGGGG
ATACCCACCTTGAATTTCGGAACTGTCTTCCCATCCCGCGGTTGCCCCCC
TCCTCCTCCCAAGAGAACACAGCCCTTGCTCTCCCGCCCGCTTCAGTCTC
ACCCCCTGCTATGCTCGGTGTGTGCTTTCGTTGCCGTTGGTGCCGGCGGT
GGGGAGAGCAGACGTACCTCCGGGAGGCAAATGAGAAGTTGGGATAAACT
CCAAAGCCTCCACATGAACTGAGTGGACTGGTATAGACGCTTCCACGTAG
AGCCGTACAGGGCGCTCGATGTCGGCTGGTGCCCCTTGTACCCTGGTAGG
AACGGCGGTGCTTGGTGAATGTCTCGAAGCGGATGATGAGTGTTGGATGG
GCAATGACCAAGTCAAGCAGCATTCCAGTACACCTCGCGCGTCGATTTGC
TACCGGTTTCAGCTTTCTTTCGATGTGTAAGCTTTTGCCATGTGCAGTTT
ATGTACGGCTTGGTTTTCGTATCGGCGGTGCTGCATACCTGCCTTATTAT
CCATGCCTGACTTTATTTTCTATTGTTGGAGAAACACTGCCACCCCCCCC
CTTCCAACACCTTCCTCACTCCTTCCGAATGTTACACTTTCGCGTTGGAG
CTCAGGCGCGAAAAGCCGAATCGCCGGGAAAGCGACGGCACAGCGAATAG
CGTCGCGACAAGTTGTTACCCCGGGTACAGCCACAACTGGTGCCGTGAGT
AAGTTGTGAGAAGACCCGTCGCTTGCCTATCTCCACGACGTCATTGCTGG
GTCGTTATCGGCAGCTTCTTATCCGGCTCGGAGGCCAGCTTGGCAAGCGA
AGCACTAGCTGTCGGTGTGCGCACACACGTGAGTTCTCGGTAGAGGTTAG
CTAGCTTGGTGAGCTTTCGTCTGACTTTCGTTTGAGCATGGGCCTTTGCG
GCTCCTCAAAAAAAAACATTTGGTGTTCTTTGAGGAGATGGTCCGGGTGG
CGGTTGATTCAGACCTCGACGTGCGTTTTTGTTTTGTTGTCGATCAACAA
TGGGCGCAGCAAATTTTCAAACCTGCAAGTTCCGCCGAGCCAGGAGAATA
GGGGAGAGGGGGGGAGGGGAGGGCTAGCTGCGAGATGGGCCTCGCACTTG
AGATGTTTCTGGTGGTGGATGATGATGGGTATGTGCGTCTCGTGTGTCGG
GATTCCGGCCGGTCTCATGTGTGCCCTTCACCCCTGCTTTTATGTACCCC
ATGAGGCCGCTGATGCAGGAGCTGCTCAAGGCACTGGCGGGAGCAAACGT
TTGGAGAACAACATTGTGCCAAGTACTTTTGGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7464:6570..8104+

>mRNA_L-elsbetiae_contig7464.16355.1 ID=mRNA_L-elsbetiae_contig7464.16355.1|Name=mRNA_L-elsbetiae_contig7464.16355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig7464:6570..8104+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGACTCGCGCCCCCGCGGGCGGCGGGGCCACGTGGGCGGAGTACGA
CCTGCAGAAGGACTGCCAGAGAGCCGCGCTGGGGATACTGACAAGCCTGG
CCTCCAGGCACCCGGGGAATCAGGCGTCGACTCGCGCCCCCGCGGGCGGC
GGGGCCACGTGGGCGGAGTACGACCTGCAGAAGGACTGCCAGAGAGCCGC
GCTGGGGATACTGACAAGCCTGGCCTCCAGGCACCCGGGGAATCAGGCGC
GAAAAGCCGAATCGCCGGGAAAGCGACGGCACAGCGAATAGGCGCGAAAA
GCCGAATCGCCGGGAAAGCGACGGCACAGCGAATAG
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