mRNA_L-elsbetiae_contig7463.16353.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7463.16353.1
Unique NamemRNA_L-elsbetiae_contig7463.16353.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7463.16353.1 vs. uniprot
Match: A0A6H5KX33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX33_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.920e-49
Identity = 116/210 (55.24%), Postives = 141/210 (67.14%), Query Frame = 1 
Query:   73 ERPHSISGLKAKYFQHILDLSPT-----TSSSSESYMRRDRPT--TDCTCRPSTVEECTCPRDDE---CSSGDTPTTRTGESARPPLSPSDDAGLAEEALGILSPSDKNELILQMHAKLRHLSGLVEEVSTVSERTAARLERTHRDALREQMLSEQRLREELLRWRHRHPE------ENARLREANHHGRRQYLVVLGKLARRQKKLLKT 654
            E P +ISGLK KYFQH+LD+S T     +SSSSE+ +R D+PT  T+CTCR +T+  CTC  D +    S  D P+T       PP+  S DA LA+EAL ILS ++K+ +IL MHAKLRHLS   E+  +VSER    LER HRDALRE+MLSEQRLREEL +W+H HPE      EN RLRE   H +RQYL VLGKLARR   L K+
Sbjct:    5 EPPSTISGLKTKYFQHVLDVSSTEPSLSSSSSSEAAVRWDQPTRRTECTCR-TTMMGCTCWGDTKEAYPSDEDAPSTTHVLRTPPPVPSSSDA-LAKEALSILSQAEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPEVAELRLENQRLREEKDHSQRQYLAVLGKLARRHTLLKKS 212
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BLAST of mRNA_L-elsbetiae_contig7463.16353.1 vs. uniprot
Match: D7G3C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.030e-23
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:  385 MHAKLRHLSGLVEEVSTVSERTAARLERTHRDALREQMLSEQRLREELLRWRHRHPEENARLREANHHGRRQYLVVLGKLARRQKKLLKTAL 660
            MHAKLRHLS   E+  +VSER A  LER HRDALRE+MLSEQRLREEL +W+H HPE   RLRE   H +RQYL VLGKLARR    LKT+L
Sbjct:    1 MHAKLRHLSHRAEDARSVSERKACCLERAHRDALRERMLSEQRLREELRQWKHHHPE---RLREEKDHSQRQYLAVLGKLARRHT-WLKTSL 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7463.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX33_9PHAE4.920e-4955.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C8_ECTSI1.030e-2367.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7463contigL-elsbetiae_contig7463:2525..4874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002850.1
Exons5
Model size663
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7463.16353.1prot_L-elsbetiae_contig7463.16353.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7463 2525..4874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.7359884-CDS-L-elsbetiae_contig7463:2524..26321622816830.7359884-CDS-L-elsbetiae_contig7463:2524..2632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 2525..2632 -
1691683846.1556118-CDS-L-elsbetiae_contig7463:2524..26321691683846.1556118-CDS-L-elsbetiae_contig7463:2524..2632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 2525..2632 -
1622816830.7507725-CDS-L-elsbetiae_contig7463:2996..31431622816830.7507725-CDS-L-elsbetiae_contig7463:2996..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 2997..3143 -
1691683846.1698167-CDS-L-elsbetiae_contig7463:2996..31431691683846.1698167-CDS-L-elsbetiae_contig7463:2996..3143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 2997..3143 -
1622816830.7643309-CDS-L-elsbetiae_contig7463:3543..37051622816830.7643309-CDS-L-elsbetiae_contig7463:3543..3705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 3544..3705 -
1691683846.17988-CDS-L-elsbetiae_contig7463:3543..37051691683846.17988-CDS-L-elsbetiae_contig7463:3543..3705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 3544..3705 -
1622816830.7775552-CDS-L-elsbetiae_contig7463:4228..43471622816830.7775552-CDS-L-elsbetiae_contig7463:4228..4347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 4229..4347 -
1691683846.1903522-CDS-L-elsbetiae_contig7463:4228..43471691683846.1903522-CDS-L-elsbetiae_contig7463:4228..4347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 4229..4347 -
1622816830.7903762-CDS-L-elsbetiae_contig7463:4747..48741622816830.7903762-CDS-L-elsbetiae_contig7463:4747..4874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 4748..4874 -
1691683846.2011254-CDS-L-elsbetiae_contig7463:4747..48741691683846.2011254-CDS-L-elsbetiae_contig7463:4747..4874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7463 4748..4874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7463.16353.1

>prot_L-elsbetiae_contig7463.16353.1 ID=prot_L-elsbetiae_contig7463.16353.1|Name=mRNA_L-elsbetiae_contig7463.16353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
LATHRARALDRYRHPAPGDERSMDERPHSISGLKAKYFQHILDLSPTTSS
SSESYMRRDRPTTDCTCRPSTVEECTCPRDDECSSGDTPTTRTGESARPP
LSPSDDAGLAEEALGILSPSDKNELILQMHAKLRHLSGLVEEVSTVSERT
AARLERTHRDALREQMLSEQRLREELLRWRHRHPEENARLREANHHGRRQ
YLVVLGKLARRQKKLLKTAL*
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mRNA from alignment at L-elsbetiae_contig7463:2525..4874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7463.16353.1 ID=mRNA_L-elsbetiae_contig7463.16353.1|Name=mRNA_L-elsbetiae_contig7463.16353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2350bp|location=Sequence derived from alignment at L-elsbetiae_contig7463:2525..4874- (Laminarionema elsbetiae ELsaHSoW15)
CTTGCTACCCACCGTGCACGCGCACTTGATCGATATCGTCACCCTGCACC
AGGCGATGAGAGAAGCATGGATGAGCGACCACACAGCATATCCGGCCTAA
AAGCAAAGTACTTCCAGCATATCCTAGGTGGGAGGAGATTACATACATAC
GCAGAAATGGAGAGCTAGCTGCGGTACGTAGTCAGCAGGTTGACCCCTAA
CTTAGGACGGTAAACCTCCAAGTGCGGCACATGAGAAGAAAGGGCAATCT
AGTCAGCCGAAGCACAAGCCACATTCCTCCCCACTGTCACGAAATATACG
TATTCCGAGGGACTCCCGCCCCGAGAGCGATTTCGTCGTGCAGATACATA
CCAGAACTGAAAGAACAGCAAATCATCTGTGAATCCATTTTCTCGCAACC
GATTAGATACACATTAGATACTGCTGTCGACACCGCCAATGTCTCTCTGC
CTCTCTGTCTCTCTGTCTTTCTCTCTCGAGCAACCATGTACCTTTCTTTC
GCGCCCACCTTTGCCCCCCGTCAAAAGACTTATCGCCAACAACATCCTCG
TCATCAGAGAGCTATATGCGGAGGGATCGACCTACAACGGACTGCACCTG
CCGACCTAGCACGGTGGAAGAATGCACTTGCCCCAGGGACGACGAGGTCT
GTGGGCGCGATCGTTGGTTGATCGTAAGAACTACCAGAAACCGCGCGGCA
GACGCAGCGATATTTAAGAGAAACAGAGAACAGAGAGAAAGAGATAATGA
GGCGATCGCCTGACGGGATAATATCTCTAGATGACATGCTGCGCTGCAAG
GGTGACAGGGAACAAGTAGGTGCAAAATATAGATACCCCGGGGCAAGTAA
GCAGTGTTGTGTACGTACATGTTGATCACCCACGCATAGCTATGTGCATT
ATTGGGAGCACATGGCACTGTAGACATGTGGTCTATAATCTACGACCACC
ACACCGATCTCGGACCCTCTTCGTAAGCGCGTGCGACCCGATAACTGAGC
TATTGTATATTGTAGTCTAGAGTTGCACAATTCCTGTAGGTTATGTACGT
ATGTGCGTACGTATGTACATGCTTGTGCGATGGCTCCTACAAAATAAAAA
ATTGGATCACTACATACATCTCTTGCCCCACCCTTTCGCCTTTGACTCTC
TTTTCCCGCCGATCCTCAGTGCTCGAGCGGCGATACCCCCACAACCAGGA
CAGGAGAGTCAGCCCGACCACCGTTATCCCCATCCGATGATGCTGGTCTC
GCCGAGGAGGCGCTCGGCATTCTGAGCCCTTCGGACAAGAACGAGTTGAT
CCTCCAGATGCACGCCAAGCTGCGCCACCTGGTTAGAGAAGACAACTGAT
ACATAAGTGTCTAGACTACTAGTCTAAACCATATCTATCTATCTAGATAA
ACAGTGTAAGAGAAAAAAGGCATACGAGACCCCCTCAAATAAACCAAAAC
CCATCGGAATAGAGATGGTGTAGGTATGTATGTAGACGAGATCAATGTCC
CGCTCATTCCAAAAATTATCACGTACGTACGTCCCGTGGACTCTTGCCGT
GCCCGAGTCGAGTCACACATGATGCATGTAATATACCCATTGGAAAAAGA
CCTTTGTCCCTCTAGACTATCTAGATATCTAGATATCGAGTTTTGATGAA
AACCTTGTTTCACGATGCTGCTATTGTACCGCTGTATGTACGCACATCCA
TACATGCATATATGCACGGAACGCCCGCCAGAGCGGTCTGGTGGAGGAGG
TTAGCACCGTCTCCGAGCGTACAGCGGCCAGACTGGAAAGGACGCACAGG
GATGCCCTGCGGGAGCAGATGCTGTCCGAGCAGCGGCTAAGGGAGGAGCT
GCTTCGATGGAGGCATCGCCACCCCGAGGTGACGAAGAAAATTTTCACCG
TGGAAGCCGGGGTCGGGGAGAGAGAGTATATCTATAGTTCTACTTACTGA
CTGTGCAGCTGGATCCATGCCGCGCTATTTATCATTAGCTCTGCGGTCAG
GTTTCCTAACACCACGAGGAGGTTGGTGGCCACATCAATGGGGGCTCAAG
GGAAAGGGCACGGGTGCCAGCTCTTTTTCCGTGGATTCACGCGCGGGTGG
GTGCCCTCACGCCTTTTACACGCCTTTGACTTCTCTGCAACCCCCTCCCA
TTCCTTCCTCTGCCGCCCTCCTCACCCTCATGCTTGCCTTCCGCGTGGCC
CCCATGAATGAACCACAAGAACAGGTTGCTGAGCTTCGGGAGGAGAACGC
CCGCTTACGCGAAGCAAACCATCACGGCCGACGGCAATACTTGGTGGTCC
TTGGGAAGCTCGCACGCAGACAAAAAAAACTGTTGAAAACGGCGCTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7463:2525..4874-

>mRNA_L-elsbetiae_contig7463.16353.1 ID=mRNA_L-elsbetiae_contig7463.16353.1|Name=mRNA_L-elsbetiae_contig7463.16353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig7463:2525..4874- (Laminarionema elsbetiae ELsaHSoW15)
CTTGCTACCCACCGTGCACGCGCACTTGATCGATATCGTCACCCTGCACC
AGGCGATGAGAGAAGCATGGATGAGCGACCACACAGCATATCCGGCCTAA
AAGCAAAGTACTTCCAGCATATCCTAGCTTGCTACCCACCGTGCACGCGC
ACTTGATCGATATCGTCACCCTGCACCAGGCGATGAGAGAAGCATGGATG
AGCGACCACACAGCATATCCGGCCTAAAAGCAAAGTACTTCCAGCATATC
CTAGACTTATCGCCAACAACATCCTCGTCATCAGAGAGCTATATGCGGAG
GGATCGACCTACAACGGACTGCACCTGCCGACCTAGCACGGTGGAAGAAT
GCACTTGCCCCAGGGACGACGAGACTTATCGCCAACAACATCCTCGTCAT
CAGAGAGCTATATGCGGAGGGATCGACCTACAACGGACTGCACCTGCCGA
CCTAGCACGGTGGAAGAATGCACTTGCCCCAGGGACGACGAGTGCTCGAG
CGGCGATACCCCCACAACCAGGACAGGAGAGTCAGCCCGACCACCGTTAT
CCCCATCCGATGATGCTGGTCTCGCCGAGGAGGCGCTCGGCATTCTGAGC
CCTTCGGACAAGAACGAGTTGATCCTCCAGATGCACGCCAAGCTGCGCCA
CCTGTGCTCGAGCGGCGATACCCCCACAACCAGGACAGGAGAGTCAGCCC
GACCACCGTTATCCCCATCCGATGATGCTGGTCTCGCCGAGGAGGCGCTC
GGCATTCTGAGCCCTTCGGACAAGAACGAGTTGATCCTCCAGATGCACGC
CAAGCTGCGCCACCTGAGCGGTCTGGTGGAGGAGGTTAGCACCGTCTCCG
AGCGTACAGCGGCCAGACTGGAAAGGACGCACAGGGATGCCCTGCGGGAG
CAGATGCTGTCCGAGCAGCGGCTAAGGGAGGAGCTGCTTCGATGGAGGCA
TCGCCACCCCGAGAGCGGTCTGGTGGAGGAGGTTAGCACCGTCTCCGAGC
GTACAGCGGCCAGACTGGAAAGGACGCACAGGGATGCCCTGCGGGAGCAG
ATGCTGTCCGAGCAGCGGCTAAGGGAGGAGCTGCTTCGATGGAGGCATCG
CCACCCCGAGGAGAACGCCCGCTTACGCGAAGCAAACCATCACGGCCGAC
GGCAATACTTGGTGGTCCTTGGGAAGCTCGCACGCAGACAAAAAAAACTG
TTGAAAACGGCGCTGTGAGAGAACGCCCGCTTACGCGAAGCAAACCATCA
CGGCCGACGGCAATACTTGGTGGTCCTTGGGAAGCTCGCACGCAGACAAA
AAAAACTGTTGAAAACGGCGCTGTGA
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