mRNA_L-elsbetiae_contig7460.16350.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7460.16350.1
Unique NamemRNA_L-elsbetiae_contig7460.16350.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: A0A6H5J729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J729_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.700e-51
Identity = 93/141 (65.96%), Postives = 104/141 (73.76%), Query Frame = 3 
Query:    3 PGAAFSSCGVPMEDGAGAGAGGDDAKGGAPQGGKN-------AHPPRCKKVYHAYCMGFNVADDELSSCPRHACVDCAEAASFFCRFCPVSLCDQHFRFDPSGIVAETYESLQQRVRRPFPRTRGGGY--RRPTRAPGNST 398
            PG AFS CGV ME  + +     DAKG A + G         A PPRCKKVYHAYCMGFNV DDELSSCPRHACV+C EAA +FCRFCPVSLCD+HFR D SG++AETYESL+ RVRRPFPRTRGGG+  R  T+A G  T
Sbjct:   88 PGTAFSCCGVSMEGPSNS----SDAKGKAAEEGATGGASKAAAKPPRCKKVYHAYCMGFNVGDDELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDSSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGT 224
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: D8LIH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH8_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.080e-48
Identity = 77/99 (77.78%), Postives = 86/99 (86.87%), Query Frame = 3 
Query:  108 AHPPRCKKVYHAYCMGFNVADDELSSCPRHACVDCAEAASFFCRFCPVSLCDQHFRFDPSGIVAETYESLQQRVRRPFPRTRGGGY--RRPTRAPGNST 398
            A PPRCKKVYHAYCMGFNV D+ELSSCPRHACV+C EAA +FCRFCPVSLCD+HFR DPSG++AETYESL+ RVRRPFPRTRGGG+  R  T+A G  T
Sbjct:   28 AKPPRCKKVYHAYCMGFNVGDEELSSCPRHACVECGEAAGYFCRFCPVSLCDKHFRTDPSGMIAETYESLKHRVRRPFPRTRGGGFGPRSRTQAGGTGT 126
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: A0A7R9YEZ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEZ6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.680e-11
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:  120 RCKKVYHAYCMGFNVADDELSSCPRHACVDCAEAASFFCRFCPVSLCDQHFRFDPSGIVAETYESLQQRVRR 335
            RC KVYH YC+G++V D+E+  CP H C  CA  ++  CR+CP S C +H    PS  + E       R+ R
Sbjct:  606 RCLKVYHDYCLGYSVPDNEVWRCPSHHCEVCAGFSTLHCRYCPTSFCPEHM---PSEALLEEQRRCNSRLER 674
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: K3WN25_GLOUD (C5HCH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN25_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 3.110e-11
Identity = 31/76 (40.79%), Postives = 40/76 (52.63%), Query Frame = 3 
Query:  123 CKKVYHAYCMGFNVADDELSSCPRHACVDCAEAASFFCRFCPVSLCDQHFRFDPSGI-------VAETYESLQQRV 329
            C KVYH  C+GFNV +     CPRH C  C  +A++ CRFC +S C+ H   D   I       V  TY  L++R 
Sbjct:   38 CPKVYHEACLGFNVPEGVTWRCPRHGCKACGLSATYSCRFCILSYCEDHLPRDIKKIDRASRELVGSTYILLKERA 113
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: A0A485K9J2_9STRA (Aste57867_3035 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9J2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.940e-10
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 3 
Query:  108 AHPPRCKKVYHAYCMGFNVADDELSSCPRHAC-VDCAEAASFFCRFCPVSLCDQHFRFDPSGI 293
            A  PRC KVYH  C+GF+V DD    CPRH C   C+  + F CRFC ++ C++H   D + +
Sbjct:  464 ASAPRCPKVYHVDCLGFDVPDDVTWHCPRHKCGFKCSAKSKFVCRFCALACCEKHLPKDATKL 526
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BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Match: A0A7S3H7L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.820e-7
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:  120 RCKKVYHAYCMGFNVAD-DELSSCPRHACVDCA-EAASFFCRFCPVSLC 260
            RC KVYH YC+ F VA+ DE   CPRH C  C  +   + C++CPVS+C
Sbjct:  150 RCLKVYHTYCLDFEVAENDEKWCCPRHYCDMCGIQNLKYICKYCPVSIC 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7460.16350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J729_9PHAE4.700e-5165.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIH8_ECTSI1.080e-4877.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YEZ6_9STRA1.680e-1141.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K3WN25_GLOUD3.110e-1140.79C5HCH domain-containing protein n=1 Tax=Globispora... [more]
A0A485K9J2_9STRA1.940e-1044.44Aste57867_3035 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S3H7L3_9STRA2.820e-751.02Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7460contigL-elsbetiae_contig7460:6683..7312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.4012954-CDS-L-elsbetiae_contig7460:6682..68521622816830.4012954-CDS-L-elsbetiae_contig7460:6682..6852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 6683..6852 -
1691683845.9458983-CDS-L-elsbetiae_contig7460:6682..68521691683845.9458983-CDS-L-elsbetiae_contig7460:6682..6852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 6683..6852 -
1622816830.4148006-CDS-L-elsbetiae_contig7460:7074..73121622816830.4148006-CDS-L-elsbetiae_contig7460:7074..7312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 7075..7312 -
1691683845.9564776-CDS-L-elsbetiae_contig7460:7074..73121691683845.9564776-CDS-L-elsbetiae_contig7460:7074..7312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 7075..7312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7460.16350.1prot_L-elsbetiae_contig7460.16350.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7460 6683..7312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7460.16350.1

>prot_L-elsbetiae_contig7460.16350.1 ID=prot_L-elsbetiae_contig7460.16350.1|Name=mRNA_L-elsbetiae_contig7460.16350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
YRAQRFHPAESLWKTGRGRGRAATTPREGLRRGERTPTPRGARRCTTPTA
WVSTWPTTSSAAVPGTPAWTAPKQRASSAGSAPSLSATNTSASTLPASSP
RPTSPCSSASAGRSPAPAGAATAGPPEPPVTAPTPP
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mRNA from alignment at L-elsbetiae_contig7460:6683..7312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7460.16350.1 ID=mRNA_L-elsbetiae_contig7460.16350.1|Name=mRNA_L-elsbetiae_contig7460.16350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:6683..7312- (Laminarionema elsbetiae ELsaHSoW15)
TACCGGGCGCAGCGTTTTCATCCTGCGGAGTCCCTATGGAAGACGGGGCG
GGGGCGGGGGCGGGCGGCGACGACGCCAAGGGAGGGGCTCCGCAGGGGGG
AAAGAACGCCCACCCCCCGCGGTGCAAGAAGGTGTACCACGCCTACTGCA
TGGGTTTCAACGTGGCCGACGACGAGCTCAGCAGCTGTCCCAGGCACGCC
TGCGTGGACTGCGCCGAAGCAGCGAGCTTCTTCTGCAGGTGCGGAGGTTT
TGTGGTGTGTTCATGTATGTATGTAGGTGCGGGAAGAGAGCGTGGTGTTT
GTGGTGGGGGTGGGTGTATGTGTGCACTGCAGAGGCACAAATCCCTCCTC
TACATAGGAAAAAAACGAAAAAACCTGACCCCCCCCCCCTTGCCCTACCC
CCTGCCCGCCCGCCCGCCCCCCCGCCCGACGAAACGCAACGCCTGTCACT
TGTCGCAAAGGTTCTGCCCCGTCTCTCTCTGCGACCAACACTTCCGCTTC
GACCCTTCCGGCATCGTCGCCGAGACCTACGAGTCCCTGCAGCAGCGCGT
CCGCCGGCCGTTCCCCCGCACCCGCGGGGGCGGCTACCGCAGGCCCACCA
GAGCCCCCGGTAACAGCACCAACGCCACCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7460:6683..7312-

>mRNA_L-elsbetiae_contig7460.16350.1 ID=mRNA_L-elsbetiae_contig7460.16350.1|Name=mRNA_L-elsbetiae_contig7460.16350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:6683..7312- (Laminarionema elsbetiae ELsaHSoW15)
TACCGGGCGCAGCGTTTTCATCCTGCGGAGTCCCTATGGAAGACGGGGCG
GGGGCGGGGGCGGGCGGCGACGACGCCAAGGGAGGGGCTCCGCAGGGGGG
AAAGAACGCCCACCCCCCGCGGTGCAAGAAGGTGTACCACGCCTACTGCA
TGGGTTTCAACGTGGCCGACGACGAGCTCAGCAGCTGTCCCAGGCACGCC
TGCGTGGACTGCGCCGAAGCAGCGAGCTTCTTCTGCAGTACCGGGCGCAG
CGTTTTCATCCTGCGGAGTCCCTATGGAAGACGGGGCGGGGGCGGGGGCG
GGCGGCGACGACGCCAAGGGAGGGGCTCCGCAGGGGGGAAAGAACGCCCA
CCCCCCGCGGTGCAAGAAGGTGTACCACGCCTACTGCATGGGTTTCAACG
TGGCCGACGACGAGCTCAGCAGCTGTCCCAGGCACGCCTGCGTGGACTGC
GCCGAAGCAGCGAGCTTCTTCTGCAGGTTCTGCCCCGTCTCTCTCTGCGA
CCAACACTTCCGCTTCGACCCTTCCGGCATCGTCGCCGAGACCTACGAGT
CCCTGCAGCAGCGCGTCCGCCGGCCGTTCCCCCGCACCCGCGGGGGCGGC
TACCGCAGGCCCACCAGAGCCCCCGGTAACAGCACCAACGCCACCAGTTC
TGCCCCGTCTCTCTCTGCGACCAACACTTCCGCTTCGACCCTTCCGGCAT
CGTCGCCGAGACCTACGAGTCCCTGCAGCAGCGCGTCCGCCGGCCGTTCC
CCCGCACCCGCGGGGGCGGCTACCGCAGGCCCACCAGAGCCCCCGGTAAC
AGCACCAACGCCACCA
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