mRNA_L-elsbetiae_contig7460.16349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7460.16349.1
Unique NamemRNA_L-elsbetiae_contig7460.16349.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7460.16349.1 vs. uniprot
Match: D8LIH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.600e-28
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:  166 DKRSNGVGEPGG-AGFGETDFVCTGCKMAARRAVRQYGLMGSLETGGVVLPYGEDEESGDENEWRIKPVTALLPRSAAA 399
            D+RS GVG PGG AGFGE DFVCTGCKMAA+RAVRQYGL+GSLETGGVVLPYGE E SGDE+E  I PVTAL PR  AA
Sbjct:  207 DRRSCGVGLPGGGAGFGEHDFVCTGCKMAAKRAVRQYGLLGSLETGGVVLPYGESEGSGDESESDILPVTALPPRDTAA 285
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BLAST of mRNA_L-elsbetiae_contig7460.16349.1 vs. uniprot
Match: A0A6H5J729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J729_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.280e-27
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:  166 DKRSNGVGEPGG-AGFGETDFVCTGCKMAARRAVRQYGLMGSLETGGVVLPYGEDEESGDENEWRIKPVTALLPRSAAAPSSPPAAPAGG 432
            D+RS GVG PGG AGFGE DFVCTGCKMA +RAVRQYGL+GSLETGGVVLPYGE E SGDE E  I PVTAL PR + A +S  +  AGG
Sbjct:  307 DRRSCGVGLPGGGAGFGEHDFVCTGCKMATKRAVRQYGLLGSLETGGVVLPYGESEGSGDETESDILPVTALPPRDSGAAASGGSGDAGG 396
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7460.16349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH8_ECTSI5.600e-2879.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J729_9PHAE1.280e-2772.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7460contigL-elsbetiae_contig7460:4213..6503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size861
Cds size858
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.3550131-CDS-L-elsbetiae_contig7460:4214..47421622816830.3550131-CDS-L-elsbetiae_contig7460:4214..4742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 4215..4742 -
1691683845.9147818-CDS-L-elsbetiae_contig7460:4214..47421691683845.9147818-CDS-L-elsbetiae_contig7460:4214..4742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 4215..4742 -
1622816830.365811-CDS-L-elsbetiae_contig7460:6173..65031622816830.365811-CDS-L-elsbetiae_contig7460:6173..6503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 6174..6503 -
1691683845.9309008-CDS-L-elsbetiae_contig7460:6173..65031691683845.9309008-CDS-L-elsbetiae_contig7460:6173..6503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 6174..6503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7460.16349.1prot_L-elsbetiae_contig7460.16349.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7460 4215..6503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7460.16349.1

>prot_L-elsbetiae_contig7460.16349.1 ID=prot_L-elsbetiae_contig7460.16349.1|Name=mRNA_L-elsbetiae_contig7460.16349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
QREPRVLPAGDNIAHNRPRRSQVSAPAPAAAGTGRRDSSRGGGSGGGGGS
GGKGGDKRSNGVGEPGGAGFGETDFVCTGCKMAARRAVRQYGLMGSLETG
GVVLPYGEDEESGDENEWRIKPVTALLPRSAAAPSSPPAAPAGGVEPSRA
MDVSGDEAEKVKVDEAAVPVEGGNGSGGGGGSDGVGSPKGKQSTGAGGAD
GTDGEAGGASGGVVGDGGGGGGGGAAPAGHNAAVANATATANKAAAALAA
NTYFSIFARRDGPDAEAMTVEQDGGPAAENDGPSGG
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mRNA from alignment at L-elsbetiae_contig7460:4213..6503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7460.16349.1 ID=mRNA_L-elsbetiae_contig7460.16349.1|Name=mRNA_L-elsbetiae_contig7460.16349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2291bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:4213..6503- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAGCCGCGCGTACTGCCAGCGGGGGACAACATCGCCCACAATCG
GCCGAGGCGGAGTCAGGTATCGGCACCGGCGCCGGCGGCAGCAGGGACAG
GGCGCCGTGATAGCAGTCGGGGCGGCGGCAGCGGCGGAGGCGGCGGTAGC
GGTGGAAAGGGCGGCGACAAGAGGTCGAACGGCGTAGGGGAGCCGGGGGG
AGCCGGGTTCGGAGAGACCGACTTCGTTTGCACGGGGTGCAAGATGGCCG
CGAGGAGGGCGGTGCGGCAGTACGGGCTGATGGGGTCGCTGGAGACGGGC
GGGGTGGTGCTGCCGTACGGGGAGGATGAGGTGAGAGTTGGTGTTGGTGT
TACAAGATGTTGGGTCTGCCTGCCTCGTTTCTATTGCGGGCCTCGACGAC
GCTTTTTTTTTTTTCTTGGCCTCGAGTCCGTGCCCGCCCGCCGGCTTGGG
GCGCTCGTTTTTGCCGGCGAGAAAAGCGCCCGGTTGCCGTTTCGCTAATG
AGGGGCGCGGGGGGGGGATTATCAGAGGTGTGTGTGAGTGTGTGTGTGTC
CTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGAAGACGTGTACTACA
CCTTGCGGTGTACTTATAGGTAACTACACTTTACAGTGCATTTGTTTGTA
CAATTAGAACCAACCGGGGTCACACAGGAGGAGGTGAACACGGGCTTTTT
CTTCTTTTTTCTTTTCTTTTTTTGCCCCGCCTTCCTCCTGCGGTGCTTGC
CTTCACTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACG
TGATTACGTCGAATTTTGGTACTCACGAGCTTTTCAGCTTTTATCGCTTT
CACCTGCAAAGTCGCAAAAGGAATGCTTCTGCTTGGGATGGAACTCCAGA
CTTTGCTGCTAGTGGGTTCGAGATTGAACCACTAGACCACCGGGGCGAGG
TACACGATCTTGTTTTGGTCTGTCGGGCTTCGATGATGTAAGCCACATGC
GTTGTGTGTAGGCCTTCTTCTCTTGGCGCCATATAGAAGTCTTCTCCAGC
CTCTGTGTGTCGGCTGGGAAGCAAGGGCGAAAGCGGTGGAGGCAGTTGTT
GGTCGACCTTTGGGGGCGGAGGGTGGCTTTCTCGAATCGCCCCGGGGGCG
AGGCGTGAAGCTCGTCTATTCAACTGGCACCTGCCTGCCTGCACACATGT
ACAAACAAGTATGTTTTTGCTCGCGGCTGCTTCTGCTGCTACTGCTGCTG
TCTTCACGTCCACGAGCTCCGGGAGTGTTGCGGTCTCCCCTGGCAACAGG
GGGGCGTAAATGGGTGTTCCCAGGACAGGATGGGCACTGTTGCAGTGTCG
CCGTTTCCGCTCCGTCTCCATCACCCCGCACTAACTGCTATTTCTCCTCA
TCGCCCACTGGTCATACATAAGTACACAGAAGAAGTAGGTACGTATCAAA
ATGTGTTATTGTGTCGATCGATGACCCTCCGGCGTTTTTGCCACATTGCT
TGCCGCGGCACCCGTGATGCGCCGTATTAAACAGCAATCGTGTGTCCAAA
ACAAAGAAATGAGCAAATACGTGGTATTTAGCAATCACGTACCGAAAACA
AAGAAATCAACAAATACGTGGTAATTGGAACATGATGTAGAGGTACATAT
CATACATACATGCGTCGTATTTTAAAAGGGCGAGCCTCAGAGTTGTTTTC
GTCTTATCGCTCAAATCTTTGAAAATTCGCTTTGACGTGTACCTCGAAAC
CAATCGAACAGGAAAGCGGAGACGAGAACGAGTGGCGCATCAAGCCGGTC
ACCGCCTTGTTGCCGAGAAGCGCGGCCGCGCCGTCCTCACCCCCCGCTGC
TCCTGCCGGAGGCGTCGAGCCCAGCAGGGCAATGGATGTCAGTGGAGACG
AAGCGGAGAAGGTGAAAGTGGACGAGGCAGCGGTACCGGTCGAGGGTGGT
AACGGCAGCGGCGGTGGCGGCGGCAGCGACGGCGTCGGAAGTCCCAAGGG
CAAACAAAGCACCGGCGCCGGGGGCGCAGACGGCACCGACGGCGAGGCTG
GTGGTGCCAGTGGCGGGGTTGTCGGAGACGGTGGTGGCGGCGGCGGCGGT
GGTGCTGCCCCCGCTGGACACAATGCCGCCGTGGCTAACGCGACCGCGAC
CGCGAATAAGGCGGCGGCGGCCCTAGCGGCGAATACATATTTCTCCATAT
TTGCGAGGCGAGACGGCCCGGATGCGGAGGCCATGACGGTGGAACAAGAC
GGGGGTCCCGCTGCTGAAAACGACGGGCCTAGTGGTGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7460:4213..6503-

>mRNA_L-elsbetiae_contig7460.16349.1 ID=mRNA_L-elsbetiae_contig7460.16349.1|Name=mRNA_L-elsbetiae_contig7460.16349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:4213..6503- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAGCCGCGCGTACTGCCAGCGGGGGACAACATCGCCCACAATCG
GCCGAGGCGGAGTCAGGTATCGGCACCGGCGCCGGCGGCAGCAGGGACAG
GGCGCCGTGATAGCAGTCGGGGCGGCGGCAGCGGCGGAGGCGGCGGTAGC
GGTGGAAAGGGCGGCGACAAGAGGTCGAACGGCGTAGGGGAGCCGGGGGG
AGCCGGGTTCGGAGAGACCGACTTCGTTTGCACGGGGTGCAAGATGGCCG
CGAGGAGGGCGGTGCGGCAGTACGGGCTGATGGGGTCGCTGGAGACGGGC
GGGGTGGTGCTGCCGTACGGGGAGGATGAGCAGAGAGAGCCGCGCGTACT
GCCAGCGGGGGACAACATCGCCCACAATCGGCCGAGGCGGAGTCAGGTAT
CGGCACCGGCGCCGGCGGCAGCAGGGACAGGGCGCCGTGATAGCAGTCGG
GGCGGCGGCAGCGGCGGAGGCGGCGGTAGCGGTGGAAAGGGCGGCGACAA
GAGGTCGAACGGCGTAGGGGAGCCGGGGGGAGCCGGGTTCGGAGAGACCG
ACTTCGTTTGCACGGGGTGCAAGATGGCCGCGAGGAGGGCGGTGCGGCAG
TACGGGCTGATGGGGTCGCTGGAGACGGGCGGGGTGGTGCTGCCGTACGG
GGAGGATGAGGAAAGCGGAGACGAGAACGAGTGGCGCATCAAGCCGGTCA
CCGCCTTGTTGCCGAGAAGCGCGGCCGCGCCGTCCTCACCCCCCGCTGCT
CCTGCCGGAGGCGTCGAGCCCAGCAGGGCAATGGATGTCAGTGGAGACGA
AGCGGAGAAGGTGAAAGTGGACGAGGCAGCGGTACCGGTCGAGGGTGGTA
ACGGCAGCGGCGGTGGCGGCGGCAGCGACGGCGTCGGAAGTCCCAAGGGC
AAACAAAGCACCGGCGCCGGGGGCGCAGACGGCACCGACGGCGAGGCTGG
TGGTGCCAGTGGCGGGGTTGTCGGAGACGGTGGTGGCGGCGGCGGCGGTG
GTGCTGCCCCCGCTGGACACAATGCCGCCGTGGCTAACGCGACCGCGACC
GCGAATAAGGCGGCGGCGGCCCTAGCGGCGAATACATATTTCTCCATATT
TGCGAGGCGAGACGGCCCGGATGCGGAGGCCATGACGGTGGAACAAGACG
GGGGTCCCGCTGCTGAAAACGACGGGCCTAGTGGTGGTGAAAGCGGAGAC
GAGAACGAGTGGCGCATCAAGCCGGTCACCGCCTTGTTGCCGAGAAGCGC
GGCCGCGCCGTCCTCACCCCCCGCTGCTCCTGCCGGAGGCGTCGAGCCCA
GCAGGGCAATGGATGTCAGTGGAGACGAAGCGGAGAAGGTGAAAGTGGAC
GAGGCAGCGGTACCGGTCGAGGGTGGTAACGGCAGCGGCGGTGGCGGCGG
CAGCGACGGCGTCGGAAGTCCCAAGGGCAAACAAAGCACCGGCGCCGGGG
GCGCAGACGGCACCGACGGCGAGGCTGGTGGTGCCAGTGGCGGGGTTGTC
GGAGACGGTGGTGGCGGCGGCGGCGGTGGTGCTGCCCCCGCTGGACACAA
TGCCGCCGTGGCTAACGCGACCGCGACCGCGAATAAGGCGGCGGCGGCCC
TAGCGGCGAATACATATTTCTCCATATTTGCGAGGCGAGACGGCCCGGAT
GCGGAGGCCATGACGGTGGAACAAGACGGGGGTCCCGCTGCTGAAAACGA
CGGGCCTAGTGGTGGT
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