mRNA_L-elsbetiae_contig7460.16347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7460.16347.1
Unique NamemRNA_L-elsbetiae_contig7460.16347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7460.16347.1 vs. uniprot
Match: D8LIE4_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE4_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 2.410e-72
Identity = 173/276 (62.68%), Postives = 186/276 (67.39%), Query Frame = 3 
Query:    3 VMSMSTALGLSSEFCGED----GMGGAFSVEHVGSLAAEAMSLVDADGGAEVGDGCSHPLLEAKTPRELALLVKHYRLLQGAKGAETLLAVTGRGGGEAASPSGWDVSQLSVGDRIGKNSFLRVIVETIATGRGE-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVTMRHPASGTTFSWITAGVKDTAGTELHEGASYRLVATVKEAVP-GAAGWAGAVGVARCRLTLVTPNSGG 812
            VMSMS ALGLSS F G+D    GMGGAFSVEHVGSLAAEAMSLVDADG AEV + CSHPLLEAKTPRELALLVKHYRLLQGAK AET L VTGRG  +  S  GWD+SQL VGDRIGK+SFLRVIVE I  G  E +        XXXXXXXXXXXXXXXXXX                                          TV MRHP+SGT FSW T+GVKDT+G ELHEGASYRLVATV EA+  G A  AG VG+ RCRLTLVT ++ G
Sbjct:  269 VMSMSAALGLSSGFRGDDAGTDGMGGAFSVEHVGSLAAEAMSLVDADGAAEVENACSHPLLEAKTPRELALLVKHYRLLQGAKTAETTLTVTGRGANDGTSSPGWDLSQLCVGDRIGKDSFLRVIVEAILLGYEEGQDDDESEDFXXXXXXXXXXXXXXXXXXDEDGCERSFSKPHPKTKRRRFPRAPIRTRPWRKKKPFAAGSATVRMRHPSSGTIFSWRTSGVKDTSGAELHEGASYRLVATVTEALAAGGAEEAGEVGLTRCRLTLVTADASG 544
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BLAST of mRNA_L-elsbetiae_contig7460.16347.1 vs. uniprot
Match: A0A6H5L5W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W6_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.530e-56
Identity = 135/239 (56.49%), Postives = 149/239 (62.34%), Query Frame = 3 
Query:  111 MSLVDADGGAEVGDGCSHPLLEAKTPRELALLVKHYRLLQGAKGAETLLAVTGRGGGEAASPSGWDVSQLSVGDRIGKNSFLRVIVETIATG----RGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVTMRHPASGTTFSWITAGVKDTAGTELHEGASYRLVATVKEAVP-GAAGWAGAVGVARCRLTLVTPNSGG 812
            MSLVDADG AEV + C HPLLEAKTPRELALLVKHYRLLQGAK AET L VTGRG  +  SP GWD+SQL VGDRIGK+SFLRV+VE I  G    + ++     XXXXXXXXXXXXXXXX                                               TV MRHP+SGT FSW T+GVKDT+G ELHEGASYRLVATV EA+  G     G +GV RCRLTLVT  + G
Sbjct:    1 MSLVDADGAAEVENACLHPLLEAKTPRELALLVKHYRLLQGAKAAETTLTVTGRGANDGISPPGWDLSQLYVGDRIGKDSFLRVVVEAILLGYEEGQDDDESEDLXXXXXXXXXXXXXXXXYDDGDGYERSFSKPHQRTKRRRFPRAHIRSRPSPRWSKKKPFAAGSATVRMRHPSSGTIFSWKTSGVKDTSGAELHEGASYRLVATVAEALAVGGTKGPGEIGVTRCRLTLVTAAASG 239
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7460.16347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE4_ECTSI2.410e-7262.68Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6H5L5W6_9PHAE3.530e-5656.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7460contigL-elsbetiae_contig7460:473..2609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue3.7e-63
Seed eggNOG ortholog2880.D8LIE4
Preferred nameirc3
KEGG koko:K17677
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0032042,GO:0033676,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.DEAD DEAH box helicase
EggNOG OGs2QT4U@2759,COG1061@1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Ec32 ortholog descriptionHelicase
Ec32 orthologEc-18_003980.1
Exons4
Model size1202
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7460.16347.1prot_L-elsbetiae_contig7460.16347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7460 478..2225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.509138-UTR-L-elsbetiae_contig7460:472..4771622816830.509138-UTR-L-elsbetiae_contig7460:472..477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 473..477 +
1691683845.989164-UTR-L-elsbetiae_contig7460:472..4771691683845.989164-UTR-L-elsbetiae_contig7460:472..477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 473..477 +
1622816830.5722196-UTR-L-elsbetiae_contig7460:2225..26091622816830.5722196-UTR-L-elsbetiae_contig7460:2225..2609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 2226..2609 +
1691683846.0635688-UTR-L-elsbetiae_contig7460:2225..26091691683846.0635688-UTR-L-elsbetiae_contig7460:2225..2609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 2226..2609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.5197046-CDS-L-elsbetiae_contig7460:477..5551622816830.5197046-CDS-L-elsbetiae_contig7460:477..555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 478..555 +
1691683846.003281-CDS-L-elsbetiae_contig7460:477..5551691683846.003281-CDS-L-elsbetiae_contig7460:477..555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 478..555 +
1622816830.531112-CDS-L-elsbetiae_contig7460:983..11301622816830.531112-CDS-L-elsbetiae_contig7460:983..1130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 984..1130 +
1691683846.0149992-CDS-L-elsbetiae_contig7460:983..11301691683846.0149992-CDS-L-elsbetiae_contig7460:983..1130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 984..1130 +
1622816830.5440636-CDS-L-elsbetiae_contig7460:1470..15991622816830.5440636-CDS-L-elsbetiae_contig7460:1470..1599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 1471..1599 +
1691683846.0269737-CDS-L-elsbetiae_contig7460:1470..15991691683846.0269737-CDS-L-elsbetiae_contig7460:1470..1599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 1471..1599 +
1622816830.5606587-CDS-L-elsbetiae_contig7460:1766..22251622816830.5606587-CDS-L-elsbetiae_contig7460:1766..2225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 1767..2225 +
1691683846.045437-CDS-L-elsbetiae_contig7460:1766..22251691683846.045437-CDS-L-elsbetiae_contig7460:1766..2225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 1767..2225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7460.16347.1

>prot_L-elsbetiae_contig7460.16347.1 ID=prot_L-elsbetiae_contig7460.16347.1|Name=mRNA_L-elsbetiae_contig7460.16347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
MSMSTALGLSSEFCGEDGMGGAFSVEHVGSLAAEAMSLVDADGGAEVGDG
CSHPLLEAKTPRELALLVKHYRLLQGAKGAETLLAVTGRGGGEAASPSGW
DVSQLSVGDRIGKNSFLRVIVETIATGRGEEEEEEEESEDGGWGDEEELD
DFDDFDDDENEEEEEGAGHKRKKPKKKAAKRTFSRRRPQKKKSSSVAAAT
VTMRHPASGTTFSWITAGVKDTAGTELHEGASYRLVATVKEAVPGAAGWA
GAVGVARCRLTLVTPNSGGT*
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mRNA from alignment at L-elsbetiae_contig7460:473..2609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7460.16347.1 ID=mRNA_L-elsbetiae_contig7460.16347.1|Name=mRNA_L-elsbetiae_contig7460.16347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2137bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:473..2609+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGATGAGCATGTCTACGGCCCTCGGACTATCCTCTGAATTTTGCGGC
GAAGATGGGATGGGGGGCGCGTTCTCCGTCGAGGTAAGGGATCTACGAAC
GTGCCTCACTAGGTAGACCTCACCAGCGGTGCGGAGCGTAGTACTGTTGT
TGTTTGTTGTTGTTGGTGGTGGTGGTGGTGAAATGTGTGACGTGTGTGTT
GTCGTGGGTTCCCGCGTTCTCCAGCATGTTGATAACGCATGTTTCAAGTT
TGCACCTCCTGGGGTCCAGCTACCCCGACGTGCACATCGACAAACATGAT
GCCTCTCATGATCCTTCGCAACCAGAAACACAATACTGGCTGGTTAAAAG
CAAAGCTTCGGCGTGCTCCACCCTGGCCTGCGGGGACATAGAGGTCCACG
GCCAATATATACACACCCAGCCATGCGTGATAATGGGCGGAGTACACCCA
TGCTGCCGCCACCTTTGCTGATGCCCACGAAAACGATACGTCGGTCCTTT
TTTGTTTTCAGCACGTGGGTTCCCTCGCGGCGGAGGCCATGTCTTTGGTG
GATGCTGACGGCGGTGCCGAGGTAGGGGATGGCTGTTCTCACCCACTATT
GGAGGCCAAAACGCCGCGCGAGTTGGCGCTCCTGGTGAAGCACTACCGTC
TCCTCCAGGCGAGACAAGAAGCGGGGTTTGTTTCACCGTGGGTTTTCTGG
ATCACCGTTGGGCGTGCAGTTAGAGATGCTGTCGAGTGGATCGAAGCGGG
AAAACTGCAACGAAGCCGGTCTGTTTCTAAATATGTTGACATAGGTGGCG
AAGAATACTTCGATGTTATTGTTATGTAGCGGTGCTTTCCGAGGGAGGTG
TGTTGCTTTCTGCGGTTGGGTGCTGAATAAGTTACGCCTGTGCTTTTTTG
ATAGGAGTACGATACAACGATACAAGGGTATCAAAGAAAATAAATTCCTG
TCGCTGAACCCCTCACACCCCCGACTCCAAACCGGCACCTGTTAATAGGG
GGCAAAGGGCGCAGAGACTCTCCTCGCAGTCACGGGGCGGGGAGGGGGAG
AGGCGGCATCCCCATCCGGTTGGGACGTGTCCCAGCTATCCGTGGGAGAT
CGAATCGGCAAGAACTCATTCTTGAGGGTGAGCTGCGAATCCAAGTTGCC
TCTTCTTCACCCGGGCATCGTCGAACTTGTTGCTGACTCTGTATTATGTT
ACTTTTGGATGAATATTGAATATTGCGCTTCAGCTTTGTCTAGACATGGA
TGCTTTGCACACCCAGCAGGTCTCCCGTTCGCTCAAACCCCCAGGTTATC
GTGGAGACCATTGCTACGGGTCGTGGCGAGGAAGAGGAAGAGGAAGAAGA
GAGCGAGGATGGCGGATGGGGCGATGAGGAGGAGCTCGACGATTTCGACG
ATTTCGACGACGACGAAAACGAAGAAGAAGAAGAAGGCGCCGGCCACAAA
CGCAAGAAGCCCAAGAAGAAAGCAGCGAAGCGAACCTTTTCTCGCCGCCG
ACCGCAGAAAAAGAAGTCGTCGTCAGTCGCCGCGGCGACGGTAACCATGC
GTCACCCCGCATCGGGTACCACTTTCTCGTGGATAACCGCCGGGGTGAAG
GACACAGCCGGCACCGAGCTGCATGAGGGCGCCTCGTATCGACTAGTGGC
GACGGTGAAAGAGGCGGTGCCAGGGGCAGCGGGATGGGCGGGCGCGGTCG
GCGTAGCGAGGTGTCGCCTCACGTTGGTGACACCAAATTCTGGTGGTACC
TAGCCGATAGCCGGTACCCGATATTGTAGGAGACTATCTAGATATATCTA
TGTGCTCGATACGTGCGTCATGTTGCGACAGCTACGTCAGACCAGCGACA
GATGACAACGGCATGTTACGGCATGGTAATGAGCTACAAGATATTACGAC
AGCTCCGCTCACGACATTCACGACGAATGATAATGCACACAAGTGCATAC
AACGCACATACACCAGACGGGCACCGCGAACACACCTGAGCACCGACTGC
TGGAGTGGTTGGAGGAATAGAGTGGCACAGTAGTGCTAGATGAGGACACG
TCGCCGACACGCTGCCCGCGAAATAAACAATCGGTTTCACCTCGAGCGGC
ATGCCGCGCGTCGCCCAATCGGATGAGCTGCAACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7460:473..2609+

>mRNA_L-elsbetiae_contig7460.16347.1 ID=mRNA_L-elsbetiae_contig7460.16347.1|Name=mRNA_L-elsbetiae_contig7460.16347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:473..2609+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCATGTCTACGGCCCTCGGACTATCCTCTGAATTTTGCGGCGAAGA
TGGGATGGGGGGCGCGTTCTCCGTCGAGATGAGCATGTCTACGGCCCTCG
GACTATCCTCTGAATTTTGCGGCGAAGATGGGATGGGGGGCGCGTTCTCC
GTCGAGCACGTGGGTTCCCTCGCGGCGGAGGCCATGTCTTTGGTGGATGC
TGACGGCGGTGCCGAGGTAGGGGATGGCTGTTCTCACCCACTATTGGAGG
CCAAAACGCCGCGCGAGTTGGCGCTCCTGGTGAAGCACTACCGTCTCCTC
CAGCACGTGGGTTCCCTCGCGGCGGAGGCCATGTCTTTGGTGGATGCTGA
CGGCGGTGCCGAGGTAGGGGATGGCTGTTCTCACCCACTATTGGAGGCCA
AAACGCCGCGCGAGTTGGCGCTCCTGGTGAAGCACTACCGTCTCCTCCAG
GGGGCAAAGGGCGCAGAGACTCTCCTCGCAGTCACGGGGCGGGGAGGGGG
AGAGGCGGCATCCCCATCCGGTTGGGACGTGTCCCAGCTATCCGTGGGAG
ATCGAATCGGCAAGAACTCATTCTTGAGGGGGGCAAAGGGCGCAGAGACT
CTCCTCGCAGTCACGGGGCGGGGAGGGGGAGAGGCGGCATCCCCATCCGG
TTGGGACGTGTCCCAGCTATCCGTGGGAGATCGAATCGGCAAGAACTCAT
TCTTGAGGGTTATCGTGGAGACCATTGCTACGGGTCGTGGCGAGGAAGAG
GAAGAGGAAGAAGAGAGCGAGGATGGCGGATGGGGCGATGAGGAGGAGCT
CGACGATTTCGACGATTTCGACGACGACGAAAACGAAGAAGAAGAAGAAG
GCGCCGGCCACAAACGCAAGAAGCCCAAGAAGAAAGCAGCGAAGCGAACC
TTTTCTCGCCGCCGACCGCAGAAAAAGAAGTCGTCGTCAGTCGCCGCGGC
GACGGTAACCATGCGTCACCCCGCATCGGGTACCACTTTCTCGTGGATAA
CCGCCGGGGTGAAGGACACAGCCGGCACCGAGCTGCATGAGGGCGCCTCG
TATCGACTAGTGGCGACGGTGAAAGAGGCGGTGCCAGGGGCAGCGGGATG
GGCGGGCGCGGTCGGCGTAGCGAGGTGTCGCCTCACGTTGGTGACACCAA
ATTCTGGTGGTACCTAGGTTATCGTGGAGACCATTGCTACGGGTCGTGGC
GAGGAAGAGGAAGAGGAAGAAGAGAGCGAGGATGGCGGATGGGGCGATGA
GGAGGAGCTCGACGATTTCGACGATTTCGACGACGACGAAAACGAAGAAG
AAGAAGAAGGCGCCGGCCACAAACGCAAGAAGCCCAAGAAGAAAGCAGCG
AAGCGAACCTTTTCTCGCCGCCGACCGCAGAAAAAGAAGTCGTCGTCAGT
CGCCGCGGCGACGGTAACCATGCGTCACCCCGCATCGGGTACCACTTTCT
CGTGGATAACCGCCGGGGTGAAGGACACAGCCGGCACCGAGCTGCATGAG
GGCGCCTCGTATCGACTAGTGGCGACGGTGAAAGAGGCGGTGCCAGGGGC
AGCGGGATGGGCGGGCGCGGTCGGCGTAGCGAGGTGTCGCCTCACGTTGG
TGACACCAAATTCTGGTGGTACCTAG
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