mRNA_L-elsbetiae_contig7458.16345.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7458.16345.1
Unique NamemRNA_L-elsbetiae_contig7458.16345.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7458.16345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7458contigL-elsbetiae_contig7458:8939..9693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size411
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.1616147-UTR-L-elsbetiae_contig7458:8938..92821622816830.1616147-UTR-L-elsbetiae_contig7458:8938..9282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7458 8939..9282 +
1691683845.7868457-UTR-L-elsbetiae_contig7458:8938..92821691683845.7868457-UTR-L-elsbetiae_contig7458:8938..9282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7458 8939..9282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.1753457-CDS-L-elsbetiae_contig7458:9282..96931622816830.1753457-CDS-L-elsbetiae_contig7458:9282..9693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7458 9283..9693 +
1691683845.8005962-CDS-L-elsbetiae_contig7458:9282..96931691683845.8005962-CDS-L-elsbetiae_contig7458:9282..9693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7458 9283..9693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7458.16345.1prot_L-elsbetiae_contig7458.16345.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7458 9283..9693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7458.16345.1

>prot_L-elsbetiae_contig7458.16345.1 ID=prot_L-elsbetiae_contig7458.16345.1|Name=mRNA_L-elsbetiae_contig7458.16345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MARRPAPPAWARTTGHKTRRPEDELVRQPSVTNPPAATVCRPVKDRAPRG
NPSEQRGRDKKSIRSGNSRKQKQAHRLFMSRFHTSRWVTNQVGSALRAPP
PFEPNLALFAAPGGSSRARTRTILCYKLGVSQFLPKL
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mRNA from alignment at L-elsbetiae_contig7458:8939..9693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7458.16345.1 ID=mRNA_L-elsbetiae_contig7458.16345.1|Name=mRNA_L-elsbetiae_contig7458.16345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=755bp|location=Sequence derived from alignment at L-elsbetiae_contig7458:8939..9693+ (Laminarionema elsbetiae ELsaHSoW15)
TAGAGTAACATTGAGGCGTGACATGGCAGTTTTTTTGTGTGCACGTGGGT
TCTGGCGACAGAGAAGAATGCGGTGTTCTTTACGGAACAGAAGCCGGTAC
TCGGTCACCGCGCTACAGGTTGCGAAGCATGCGCAAGCCCGTCTCTACTT
CTTCCGCGATCTCTGCTGACACGCACTTCGTCGTCGACTAAAAACATCGA
GCGATTCGATTGGCATCGTATTTGCGGGACAACTCGAAGACAACAACAGA
CAGGTCCACGAACGCGGGGAGAACGTTCCAAAACCGCCCTCACGATTTAT
CGGCCTTGGATGGTGCCACGCGCCAGCAAAGGCTAGAGCGGACTATGGCC
CGCCGCCCCGCCCCACCCGCCTGGGCACGCACAACAGGCCACAAAACACG
AAGGCCCGAAGATGAACTCGTCCGCCAACCGTCTGTAACGAACCCACCCG
CGGCTACCGTGTGTAGACCGGTGAAGGACCGGGCGCCCCGAGGAAATCCC
AGTGAACAGCGCGGCCGCGATAAAAAAAGTATCCGCTCCGGTAATTCTCG
AAAACAAAAACAGGCACATAGATTGTTCATGTCTAGGTTTCACACTTCTA
GATGGGTTACGAACCAGGTTGGTTCGGCACTCCGTGCGCCGCCACCCTTT
GAGCCAAACCTTGCACTATTTGCTGCACCGGGCGGCAGCTCTAGAGCCCG
TACGCGAACTATTTTGTGCTACAAACTAGGAGTTAGCCAATTCCTGCCAA
AACTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7458:8939..9693+

>mRNA_L-elsbetiae_contig7458.16345.1 ID=mRNA_L-elsbetiae_contig7458.16345.1|Name=mRNA_L-elsbetiae_contig7458.16345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig7458:8939..9693+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCGCCGCCCCGCCCCACCCGCCTGGGCACGCACAACAGGCCACAA
AACACGAAGGCCCGAAGATGAACTCGTCCGCCAACCGTCTGTAACGAACC
CACCCGCGGCTACCGTGTGTAGACCGGTGAAGGACCGGGCGCCCCGAGGA
AATCCCAGTGAACAGCGCGGCCGCGATAAAAAAAGTATCCGCTCCGGTAA
TTCTCGAAAACAAAAACAGGCACATAGATTGTTCATGTCTAGGTTTCACA
CTTCTAGATGGGTTACGAACCAGGTTGGTTCGGCACTCCGTGCGCCGCCA
CCCTTTGAGCCAAACCTTGCACTATTTGCTGCACCGGGCGGCAGCTCTAG
AGCCCGTACGCGAACTATTTTGTGCTACAAACTAGGAGTTAGCCAATTCC
TGCCAAAACTCATGGCCCGCCGCCCCGCCCCACCCGCCTGGGCACGCACA
ACAGGCCACAAAACACGAAGGCCCGAAGATGAACTCGTCCGCCAACCGTC
TGTAACGAACCCACCCGCGGCTACCGTGTGTAGACCGGTGAAGGACCGGG
CGCCCCGAGGAAATCCCAGTGAACAGCGCGGCCGCGATAAAAAAAGTATC
CGCTCCGGTAATTCTCGAAAACAAAAACAGGCACATAGATTGTTCATGTC
TAGGTTTCACACTTCTAGATGGGTTACGAACCAGGTTGGTTCGGCACTCC
GTGCGCCGCCACCCTTTGAGCCAAACCTTGCACTATTTGCTGCACCGGGC
GGCAGCTCTAGAGCCCGTACGCGAACTATTTTGTGCTACAAACTAGGAGT
TAGCCAATTCCTGCCAAAACTC
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