mRNA_L-elsbetiae_contig7451.16339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7451.16339.1
Unique NamemRNA_L-elsbetiae_contig7451.16339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7451.16339.1 vs. uniprot
Match: A0A6H5JJ53_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJ53_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.770e-9
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:  329 MSDKPGGAFSGLRPTSFVHGTRMARSRVSSITEEEQ-TGVQPLVSQSYSG 475
            MSDKPGGAFSGLR TSF      ARSRVSSI EE++  G QPLVSQSYSG
Sbjct:    1 MSDKPGGAFSGLRSTSFSIARGPARSRVSSIEEEDRRAGNQPLVSQSYSG 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7451.16339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ53_9PHAE3.770e-974.00Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7451contigL-elsbetiae_contig7451:3049..9391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D7FTQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size476
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7451.16339.1prot_L-elsbetiae_contig7451.16339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7451 3049..9183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.8344522-CDS-L-elsbetiae_contig7451:3048..32891622816829.8344522-CDS-L-elsbetiae_contig7451:3048..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7451 3049..3289 -
1691683845.5378525-CDS-L-elsbetiae_contig7451:3048..32891691683845.5378525-CDS-L-elsbetiae_contig7451:3048..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7451 3049..3289 -
1622816829.8440962-CDS-L-elsbetiae_contig7451:9157..91831622816829.8440962-CDS-L-elsbetiae_contig7451:9157..9183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7451 9158..9183 -
1691683845.5509455-CDS-L-elsbetiae_contig7451:9157..91831691683845.5509455-CDS-L-elsbetiae_contig7451:9157..9183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7451 9158..9183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.8538017-UTR-L-elsbetiae_contig7451:9183..93911622816829.8538017-UTR-L-elsbetiae_contig7451:9183..9391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7451 9184..9391 -
1691683845.570869-UTR-L-elsbetiae_contig7451:9183..93911691683845.570869-UTR-L-elsbetiae_contig7451:9183..9391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7451 9184..9391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7451.16339.1

>prot_L-elsbetiae_contig7451.16339.1 ID=prot_L-elsbetiae_contig7451.16339.1|Name=mRNA_L-elsbetiae_contig7451.16339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MGRSRGRSGHLPAPVASVLASPKDAPLEFFQDASRPLSARMSDKPGGAFS
GLRPTSFVHGTRMARSRVSSITEEEQTGVQPLVSQSYSG
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mRNA from alignment at L-elsbetiae_contig7451:3049..9391-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7451.16339.1 ID=mRNA_L-elsbetiae_contig7451.16339.1|Name=mRNA_L-elsbetiae_contig7451.16339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6343bp|location=Sequence derived from alignment at L-elsbetiae_contig7451:3049..9391- (Laminarionema elsbetiae ELsaHSoW15)
GGCGATCCTGGAACAAGAGAGGGGAACATCGAGATTGTACTTGGGGGGTA
GATAAGCCGAGGAGGAAAGAACCAGGAAAGCACGCAAATCGCAAGGCCAG
GTAAATCCCGCCTGCCTCTGGGCCGGGCACCGAGTGTGTGTGCTCTGCTG
CAGCAGGGGCAGAAAAGGAAAGGAGCGAGGGAGAGCAGGCGAGGGGAGCC
GGAACAGGATGGGTCGCAGTCGCGGTCGAAGCGGGTGAGTGGAGTTGAGA
CATCGAAACAGAGATCGAGTCGGCGGTGCTCTTTGTGAACCATACATACA
TAGTCTCTGCATGTGATTTCAGAACGCAAACATTCGAATGCCTTTTTAGG
TTTTTTAGCTTTTTCAACTCTGTTCTGGGGCTGTTTGGAGCGTGGTCGCA
AACACTCAAAACACTAGCGAATAAACCAGCAGCATCCCACGCAACGAGCG
CACGCCGAGGAGAGATACTTGCCCCTGAACGGCCGACAGCGCCTCTGGCT
CTCTCGAAGGAAATGATGCGTATCATCGGTCCGAGATTGATTGTGTTCCT
CAGGTTTGGTCCATACTCTCATGTCTTGAGAGAGTGCACCAAATTTCAGA
AAAATCTCCGTCGGCAACAACGGGAGAACCGCAGTGCAGTGTTGCCTTTG
GACGCACCAAAGCCATGTCACCGCGCACAAGATTCCCGTGTTGGATGCAT
AGATATGAGCTGTAAGCTGCAGGCTTATGAGAGAGCGGACAATCATGTCT
CGGTTTCGCCCGAACGAAATTGTGTCACACCACAGAAGACGCACTGAACA
CGCAACACAATTTTGAACTCTTAAACAGCGCGCAATAGGAATGGGTTCTG
TTCTCCGCGTCCAGAACCTCGGGCTGTTTTAGGACGTGCTGTCTGTGATC
AAAATCGAGGAGGTGCCTAGAATGGTGGCTGATTATTGTTATTGGTATGT
CATATCCTCTGGCGTACAGATGTATGTAGCCTACAAATGATGCACGTAAA
ATGTATTATGAAGTACACGGAACGTAGAAAGCTAGCACAGCCGCCCAACG
CCAAAAACCCGCTAGAGTACACAGCAGTTTCCACCAAACAGAATATCGGC
GCTTGCTTTGTATGTCACCTGCCGCCGGTCTCAAATCAAGACCTCAGTTG
GGATGCACACCACGCCACATCCCGCCCTTCTGGCCGTTAAATGAAATATA
AAGCAGTTCATCTAAAATGGAACCTAGCCCACATCAGAGACGGGACTCCA
TGGGGATCTCTGAAGGGACTAACCGTAAGCTTCTAGCTGCTGGCTCCACT
TGCTGAGAAACGCGAGGGCAGACCTTTTGAGATCCCATCTCAGCCTGCCT
GCCACCTCGCACCAACCGGAGTGACCGGGTGTCCTGTCCATTCTCTTGCG
AAAGTGGCTCGCGTCAGAAACGGAACGAAGCGTCTTTGCAGGGTTAGGGT
TAGGGTTCTGTGTAGGAGAAACTATGAAACTACTCCTGTACTTCCTAAAT
CTGAGGTGCCTTCCTTTTTTTTTGTTGAGAAGTACTTCTACTCCTTATAA
TCTACTTGTTGCCCAGACTCACGTTAGACAGGGAATAAAGTTGAAAGGAT
GTTGTTTCTGATCTCGAGGCGTGACTAGGAGAGCCCCGCAATGCGCCTGG
CTGCCTGCCTGATTGCGTTGTGTCGTGCTGTCGTGCGTTCAGAATCATAT
GCCGCGGGGGCCGCACCCCCGTTCACAATATGGTATCAAAACAGGCTCAT
CAGTTGTTTGCGTGTGTCCAATACGTGCACTGATGTGTCCGTCCAGCGGT
ATGGTTCCAAAAATGAGAACAGGTGCCATAGTTATTTAGGAGAACAAAGC
TTTTGCCCACTGCCAGACCTAGGAGGGTATGGGTCATGCATACTCCGGAG
TTGATGTATTTACTGATACTACAAATACATACATCTACCGAAAACCCTCT
GTTCCCCCACCCTCCTTTTCGGCCGAAAAAGAGCACGATTCAGAGATTTT
CCCCAGGGAGTAATATTTTACTGCAAAACAACCCCCCTCTCCTAAATACC
CACGGTTCTTTGGATTCGCATGCACCCCCCGCCCTAGATTTTTCTCAGCA
TGTTTTTCTGTGGTTGTTTCTCACATTAGCTCTCTAGTCCAAAACATCCT
TGGGGGCCCGTGGTCACAAAACAAGGCACACTCACGCCACGAAGGAAAAA
TACACAAAATATGGTACATACGCGCCCGGCGGTACTAAACTGGACCCCGG
GGGGTCTTGCGTCTCGCCAGTACAAAATCAAAGGTATAGTACATACTACT
CGGAAGACAAAATATAAGAAAGTTCGAAAAGCAAACCAAATAAATACCAA
ATACCACGCCAGGGGAGGAAAGAGAGCTACAGACAGCCGAAGGTGGTTTG
GCATGACTGCAGATCAAAAGTGGTTGCTTTTTGCAACCGGACACATATTT
TCTGTGGACATTTGTTGATGTTTCTCACATTAGCTCTCTAGTCCAAAACA
CCCTTTGGGGCCCGTGGCGACAAAACAAGTTTGTGCGAGGGTATGTGCCA
TGAACGGTTTGATGCAGTTTGTCGCTGATCTGTGGTACATTTTTGGGGTG
GTTGTTCGCATTTTTGGGTGTGTTGTCGTGGGCAAACCCTGCTGCAACGC
GGAGCAGCAGCAGTCAAAAGCAAGCCGCACAACTTGTCACGCATCGTTTT
GACTGTTCTCGCATGAAAATTGTTCTGTCTATTATCCCGTGTAGTTCTTA
TATATCCTATCATCCGTAGTACATATCGCTCTCACTCGCACGTCAAAACA
GTCTTCCGTGGTCACAGGCTATAACTTGGGTGGCCGAAAAAACGTGGGTA
CCAACAGAAAAAAGAAAAAAGAAGGCTCCGCACTGATGACGCAGATGGGA
TGCTGGCATGAATCATAGGGATCACCGAACAAGGATCCATGCGACGACTT
TGCCATCGCGGTTTGGGTTTGCAGGAGAGCTACAATATGTATGTAGAGAG
AGCGAAGAAGACTGCTGTGTGAAAAAAAAAACGTTCCACCCCCCCGGGTA
GTTGTGCCGAAAAAGTAAAAGGTCCCCCCCTGGACGCAATCACCCCTGGG
GGGTTGTTCCGGATTTTGAAAAAGACCCCCTCCCCGGGGAGAAAAACAGA
GGGTTTTACGATACGTGTTCTATTCTGTGCTTTCCAAACGACCCTCTACA
TATGTTTAGGTACATCCTTCTCCGCCTTCGGTGTTGGTGTGTGAATATGT
GTGAACCGCTCTTGGAAACGGAAAACACAGCTGCATGCGTGCATACGCCA
AGCCTTAACTACCCCCCCCCGCGCGCAGCATTCCTTCATTATCGATCTTA
TTGCTTTCCTTCTAAATTGGTTCATCATGCTGCCATATTGCATACACGAT
ACCCATACACAATACTTCGAAGTATAAAGCAGACAAACCTAAGATGGGTC
TGGGAGTGGATTTTGTCCGAGGTAGCTCTACATACACGGTTCTACTGAAG
TAGAACGTTCTTCACAGATTGCACGCTGTCTGCTGGGCTTGGGTAGCGTC
GAAGTAATAAGTAAGCCAACACACAGCCGGTGCAGGACTGGCCGATTCGC
TGGATTTTCATGTATTCACAGTTTTATCCGGATAATAATTTCTGAATGCG
TGAATGGGCCACCATATCGGCAACGGGATCATCTCACTCTCAAGCCGATT
GAACGATTGTGCCGCTTCTTGCTTTCGCGGAAGGGAGGAAGCTAAGCTTA
ACCAAAGGCTAACCAGAGGGAGTGTGTGCTTACTGTTTGTTTGTGGGGTT
GTTTTCGCCTGTTGCTTTTTCCGGGGCTGGGCGAAAGGGCCATGTCAACA
CCATTTAACCGACGGAGACGGATCGGGTTTGATCTCCTCCCTTCGCAGCT
CTCTCTCTCTTAATTCCTGGTCTTGAGCTTGTTCGCCGAGGGCAGAGAGA
CGTACAATCAACACGACAGGCCACACACACACTCAAGCCCGTCACTGTTG
TGCTGAGAGAGAGCAAGAAGGTCCCCCGAAATGTAGTTGCGGGCATTCTG
TCTGAGCTTGCGTTCCACCGATTTGTCGGCTATACGGGCGCGCGAGCGGG
CGGGGGTGCTGTATCCGATCACCGTACCCGGTCCCTGTAGAGAATAACAA
GGCCCGGCGGGCGCACGGCCAAGAACATTTTGTGCGACCCAATCCTGTTT
CTTCTTTGGAGCTTACGAAAACTGCTGCCGCGTTGGGTATATCATATGAT
ACCATTATGGTCGATGCCCGCGTGTCATGTTGATCGTAGTCATGCGTGTC
ATGTTGAGCTTGACATCAGTCCTCAACCCCGAGCAAGCATGTCTATAAAC
ATATATACATTCATACTTGGGCTCTCGAGCCCTGAGAGGCCTCCGTGCTC
GCCCAACGCTCTAGAGCTCTTTTTTGCGATTTCTCCGCCCCTAGAGGTCG
TCTCGCCGCGAAACTTGCGCGTGTCGATAGCGCTGAGTTGCGAAGGCCTT
GCCCTTGTGCGGCTCGCGATCGGTACGGCCGTGGCGCAGCGGTAGCGAGG
TCGCAAACTCGCGTCTACGAGGTCTACGCCCGCTCCGCCAATTACACGCG
CCAATCTTAGCAAGGACCAATCCATTGGCGATCCCAGTACAGTCCCTTAC
GGCGCTTCTTTTTAAGTCGCGCGACGGAAATTGCCGCGGACACCAAAACT
CTCAATTCCTGTACCTAACACAGCTATTGGTACACCCAAAAAAGTTATCT
TCTTACTTAGTGCTGCTGTCGTTGCTTCCCAACATGCTGTTGCCTTTCGT
TGCTTCTAACAAACCAAGCGTTGTCGGGGTGCACGCACGACCACGACCAC
GACCACGACCTGGCGGGAAATCTGCATGTAATTCCCCGTCATCGTGCCGA
CCGTGGCCGTTGGGCACGTGTAACTGACACACCTGCGCAAAGATACGTCA
AACTTCGCGATCTTTTTCGCGAAAGTAATATGAACAGCACTCCGGTGTTC
CTAGCACAAATCGGTGTACAGTTCCAATCACCCCCTGCCCGTGAGGAACT
GTCCGTTGCAGTTGTGCACCACTTCCCGTACACTTCTCAACAGTGGACTT
CACCACTGCTACTTCCCGTTGTAGTTCCAGAGTTGGTAGTTCAAGAGTGT
TTTTCTGTCGGGCGACAGTCAACCGCCATGCTTTCATTTGCGTCTCATGC
CCACTCGGCACACCTAGCGGAATACGGGTGTTTTCAGGCTTTATTCCACC
AGTTTGGGCACCAGCAGTGAGTTCCGTTTTGCGCAGGCAGCAGACACCAC
GTTCTATACCGTTTCTCTGGCGTTCCCTGTTTTTTTTTGTTGATGTGCGT
CGAGTACGTTTTCCTTCTCCCCGAGTGCTTGCGTGATCATGTTTGAAGCT
AAAGCAGAGAGCACATCAACACTTTGGGAACCAACCTCACACTTTCGACA
GCAATAAATAATGTTTCTTTTACACTTCCTTTAGATATTGCAATACCCTA
CATTTTCGAGGACCTCCTCTCAGCCTACCATATCTTTATCATCATGTCTT
CCCCCCGGAAACACTCATGTACCTCTTTTCATTCAACCTGTACGAAACAA
ACATACGCCACCAAGTCAACAATAACGGGCACATCGACCCACTTGGCATG
GTACCCAGCCTTCAGCGGAGCGGTGGGACGCCTCAGCCGCCCATCGCGAA
GCCCCTTGCATATATCGAGTATGATACATTTACAAAAGTGGATGAGTCGA
TTGGCCGGTAGTCGCGTGTGAAGCTGGTGAGAGACTAGGGCCGTTTTCAC
TTTTGAGCGCATATATTACTATGAAGTATACTTGAATTATGCAGTGTATA
TTTTCGCGCTGCGTTTTTATTTGCTCTGCTTTCTGTTTCGGCGTGCTATT
GAATGTAGACCGCGTTTGTCTTTAATAATGATGGAACTTTGCTTGCTGCA
CTTGGCTGGGGGTGCGTGCCCGGGGTATCCTAACCTCGAGAAATACTCAC
CTCTTCTACCGCGAGGCCGCGAATGCTACTGCTGTCTCAGCTGCTCCCGT
CACCTGCCGGTGTCTTTGTTTGTCTTTTGTGTCTTCGTCTCCGGGAGCAC
AGCCACCTGCCGGCTCCGGTGGCTTCCGTCCTCGCGTCCCCGAAGGACGC
CCCTCTGGAGTTCTTCCAAGACGCGAGCCGGCCGCTGTCGGCGCGCATGA
GCGATAAGCCTGGCGGGGCTTTCTCGGGACTACGGCCAACGTCCTTCGTG
CACGGCACCAGGATGGCGCGGTCCCGCGTGTCCTCCATCACGGAGGAGGA
GCAGACCGGGGTGCAACCGCTCGTGTCTCAGTCCTACTCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7451:3049..9391-

>mRNA_L-elsbetiae_contig7451.16339.1 ID=mRNA_L-elsbetiae_contig7451.16339.1|Name=mRNA_L-elsbetiae_contig7451.16339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig7451:3049..9391- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCGCAGTCGCGGTCGAAGCGGATGGGTCGCAGTCGCGGTCGAAGC
GGCCACCTGCCGGCTCCGGTGGCTTCCGTCCTCGCGTCCCCGAAGGACGC
CCCTCTGGAGTTCTTCCAAGACGCGAGCCGGCCGCTGTCGGCGCGCATGA
GCGATAAGCCTGGCGGGGCTTTCTCGGGACTACGGCCAACGTCCTTCGTG
CACGGCACCAGGATGGCGCGGTCCCGCGTGTCCTCCATCACGGAGGAGGA
GCAGACCGGGGTGCAACCGCTCGTGTCTCAGTCCTACTCGGGGCCACCTG
CCGGCTCCGGTGGCTTCCGTCCTCGCGTCCCCGAAGGACGCCCCTCTGGA
GTTCTTCCAAGACGCGAGCCGGCCGCTGTCGGCGCGCATGAGCGATAAGC
CTGGCGGGGCTTTCTCGGGACTACGGCCAACGTCCTTCGTGCACGGCACC
AGGATGGCGCGGTCCCGCGTGTCCTCCATCACGGAGGAGGAGCAGACCGG
GGTGCAACCGCTCGTGTCTCAGTCCTACTCGGGG
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