mRNA_L-elsbetiae_contig7450.16338.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7450.16338.1
Unique NamemRNA_L-elsbetiae_contig7450.16338.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7450.16338.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.710e-15
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:  156 GSSSKGKMGKLRKSLSRRLSLSRRSSSGSTPQHDGYSAGFTSVAGTDEARNGRDATGDQEQPXXXXXXXXXXXPSPGVAVVYSPMAAPAPRRAP-----VSPALPGAPVSS 473
            G++SKGKMGK+RKSLSRRLSLSRRSSS STP H+ YS GFTSVAG++E R  RD   + EQ               GV VV+  M  P  R AP     +SP  PGAPVSS
Sbjct:   44 GTNSKGKMGKIRKSLSRRLSLSRRSSSSSTPNHERYS-GFTSVAGSEEGRYDRDGVPENEQALASPA---------GVPVVFPGMGPPVARGAPQGRNLLSPVPPGAPVSS 144
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7450.16338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNK6_9PHAE2.710e-1554.95Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7450contigL-elsbetiae_contig7450:4833..7834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7450.16338.1prot_L-elsbetiae_contig7450.16338.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7450 4901..7834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.727684-UTR-L-elsbetiae_contig7450:4832..49001622816829.727684-UTR-L-elsbetiae_contig7450:4832..4900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 4833..4900 +
1691683845.4642005-UTR-L-elsbetiae_contig7450:4832..49001691683845.4642005-UTR-L-elsbetiae_contig7450:4832..4900Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 4833..4900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.740248-CDS-L-elsbetiae_contig7450:4900..50811622816829.740248-CDS-L-elsbetiae_contig7450:4900..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 4901..5081 +
1691683845.476832-CDS-L-elsbetiae_contig7450:4900..50811691683845.476832-CDS-L-elsbetiae_contig7450:4900..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 4901..5081 +
1622816829.7506013-CDS-L-elsbetiae_contig7450:7568..78341622816829.7506013-CDS-L-elsbetiae_contig7450:7568..7834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 7569..7834 +
1691683845.4885623-CDS-L-elsbetiae_contig7450:7568..78341691683845.4885623-CDS-L-elsbetiae_contig7450:7568..7834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 7569..7834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7450.16338.1

>prot_L-elsbetiae_contig7450.16338.1 ID=prot_L-elsbetiae_contig7450.16338.1|Name=mRNA_L-elsbetiae_contig7450.16338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MRRTSGGSAGDIGAPSGGNGSANSVSGPVGSSSKGKMGKLRKSLSRRLSL
SRRSSSGSTPQHDGYSAGFTSVAGTDEARNGRDATGDQEQPEQPEQPEQP
EWPSPGVAVVYSPMAAPAPRRAPVSPALPGAPVSSSAAAAAAAEAHAAA
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mRNA from alignment at L-elsbetiae_contig7450:4833..7834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7450.16338.1 ID=mRNA_L-elsbetiae_contig7450.16338.1|Name=mRNA_L-elsbetiae_contig7450.16338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3002bp|location=Sequence derived from alignment at L-elsbetiae_contig7450:4833..7834+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTACAGCTAGTGGGCACGCTCAAGGCATAGCTAGGAATTGGGGTATCT
CTCTCGGTTGGCGAAAGGATGCGGCGCACTAGCGGCGGGAGCGCGGGAGA
TATAGGCGCACCCTCCGGCGGTAATGGCAGCGCCAACAGCGTAAGCGGCC
CTGTGGGCAGCAGCAGCAAGGGAAAGATGGGGAAGCTAAGGAAGTCTCTG
TCGCGAAGGCTCAGCTTGTCCAGGAGGAGCAGCTCGGGAAGCACACCACG
TGAGAAACGGCCGGCGGCTTTCCACTTTTCCGTTGAACGAACCTGCTCTT
ACAAATGTTCCTAGTCCATCCTGGAGTGTCGGTCTCGGAACCTGTTGCGA
CTGCTGTTTTGTGATCGTTTTTTGGCAGGTGACATGCACAGCGCCTTGAG
AAGACACGCGGGCAGAAAGTAGCCAGACGTGCTACCCGATATACTACCTC
TTCGTTGATATGAATCGACGTCGTCTTTTTTGTGTGGCCTGGTTTCGGGA
ACCTCGCACACACTCTCCCAAATCGAAAATCCTCCTATTTTTTGAAAAAT
TGAAAAATTGCGACTCTTTCCCGACTCTCTCCCCCTGAACGGGTTTTCTG
TGTCGGCCAACACACACCAGAAGGGCGCCTCCCGCATCACAGACAGCAGT
GTTCTGTGTTAGCTTTGACTTTCTCACCCTCTAGTGTAGCTGCAGCCTGC
TTCGACGAACACACCGGTGGAGACTTTACCCCCGCCGTACATACATAATT
TATGTAAAAGCCTACATACATAAAATTGCAGGTGTACATAGTACATAGTA
TATAGCAGTCCCGGGCGGTGAGGGGAGGTTGGTTATGTTGTGTGTCTATT
TAATGTACAACAGCAGTCTTTTGGAACGACTTTTTCACAGCTTGGGCGTA
AATTAGTGACATTTCTAGACATTTGATGTAAAATCAACTCCGACGAGTAC
TCTGTACTCCGTATGTGCTCCTGCATTGTTGCACTGCATTATATTGATGT
CAATGGTAGATGTAGTAGATACAAGTCGTTACATTCGTATTGTAGACATC
CGTCGGTTTCAGGGATTCGCACGCCCGACGATGGCGGCAGGCGCACCGGC
CGCACCTCACAGCTGTGTGCTATAGGGTTCCTGCAAAAGAGCCCCCGATT
CTCGAAAAAGAGCTGTGGGGGCAGCGGGGAGGGGGGGTTTTATCTGGGAG
ATAGAGTTAAAAATCTCCCAGAGTGTTGTTTGGACTCCAGTTTCAAGGAG
GCACATACCCCGTTGGATTTTTTAGGCGGGATATCCTGGGACAGCGGAAA
CATGGGTCCTTCAGTACACCCCCCAGGCACGGAGAAGCAAATATCTCAGC
TTGCAGAGAGTGATCCAAAACACGACTTTGAGACTGTATTGTAGGTGAGA
TGTGTGACTACAGAGGAGGCCAGACGTTCGGGTGGTAGTTTTTGTAGGGC
ACTAACTCTTGGCATCGCACAAATTAGATATGGAATTAGAGAGACGAAGG
CCAGAGAGAGAGCCGGTTGGGAGACAGAGTGCAGCACGTTTTTTTTGCGT
GAATAAAGCGTCGAGATCCACGAGGAAACTACACACATCGGAAAGAGTAG
GGCGTCAGGTGCGCAGATCGCCCCTTGACAGTAGCTAACTCGTTGCAGGG
CGCTAATTCTTGCTACTGCCGTCTGCTGCTGCTGGCCTGGCCGAGCGCAC
CAACGTGTGTTGGAAGGCAGCTCTAATTCGACACTCACAGAGCGATTCGG
GGTCTAAAATTTGCACCGACACTAGCTATGAGCAATAGGTTGTATATGCT
ATGTGCTTTGGGCCGTCCGGAATAGAGCATGCCGGCTCCTAGAGCTGGCG
CGCGATGCCAGTGCGTGCCGAAGAGGGCGGGCGCTTTTGGTGGGGGGGTG
TTGTATGAGCGTATTTTCGTCTGCGCCGCCACCAGGACAGTTGCGGATCG
CACATAAATCACCCATACTCCGCGACTGGCGCATCGATTCGCGTCATTCT
TTTTTCTACACCCTCGGGAAGCACAAGAGCTACAGGCAGGTTCTTTCCAC
TTCACCAACCTGGCATTCAGCGTCACGATCTCACCGAAAACGAGCGAAAA
AAACGAGTCAAATGACACTGCTCCCACGGCCACTTGTTCATAATTGGGAG
CCCTGCTACAAGCAGCCCTACGTGATAGCGCCAGACATGATATGTGCCAC
TCCCTGTGTGGTGGCCCTGTTTCAGACAACGGCGCGCGGATATGTGTGTC
CTTCCCATTTATTTTAGTGACAGTCCCCCCAAAGTGGAGACGTGTACTAC
ACCTTGCGGTGCACTTATATATACTGACTCTGTATCAATCGCAGGATAGG
TTGGTATATGTGTACTGTGGGGAATCAAAGAGAGCAGCATGTAGCACCGC
TCTCAAGAGAGCTCCGAGCCGATCGCCCTTGCCATCTGCTACTACTGCTG
TAGTGTGATGTGAAATGTTCGCTGTTCACCACCCAGAAACATGTTCCCAG
CTCAATCAAGCCTTCTGTCGCCACTGCCTCCGCCGACTTCAAAGCAAACC
CCCAGCGCTGCTTCCCTTACAACAGACGTGTGTCACACCTTGGGATAATT
GTACCTACGTTCATACTTTATGTAGGCATTGGCGCATCGAGAAACACTTC
GATCCTACACACACGTGAGACTGGCCCTATGTAGCCGACCGCCACTCGCA
TACCACCCCGCCCCCGCCCCGTGCCTGTTGATCCAGAACACGACGGTTAC
TCGGCAGGATTCACGTCCGTGGCCGGCACCGACGAAGCTCGAAACGGCCG
CGATGCCACCGGTGACCAGGAGCAGCCGGAGCAGCCCGAACAGCCCGAAC
AGCCCGAATGGCCATCCCCGGGCGTCGCCGTGGTGTACTCTCCAATGGCC
GCGCCCGCCCCTCGCAGAGCCCCCGTGAGCCCCGCCCTCCCGGGCGCCCC
GGTCTCCTCCTCCGCGGCGGCCGCCGCGGCCGCCGAAGCACACGCTGCCG
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7450:4833..7834+

>mRNA_L-elsbetiae_contig7450.16338.1 ID=mRNA_L-elsbetiae_contig7450.16338.1|Name=mRNA_L-elsbetiae_contig7450.16338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig7450:4833..7834+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCGCACTAGCGGCGGGAGCGCGGGAGATATAGGCGCACCCTCCGG
CGGTAATGGCAGCGCCAACAGCGTAAGCGGCCCTGTGGGCAGCAGCAGCA
AGGGAAAGATGGGGAAGCTAAGGAAGTCTCTGTCGCGAAGGCTCAGCTTG
TCCAGGAGGAGCAGCTCGGGAAGCACACCACATGCGGCGCACTAGCGGCG
GGAGCGCGGGAGATATAGGCGCACCCTCCGGCGGTAATGGCAGCGCCAAC
AGCGTAAGCGGCCCTGTGGGCAGCAGCAGCAAGGGAAAGATGGGGAAGCT
AAGGAAGTCTCTGTCGCGAAGGCTCAGCTTGTCCAGGAGGAGCAGCTCGG
GAAGCACACCACAACACGACGGTTACTCGGCAGGATTCACGTCCGTGGCC
GGCACCGACGAAGCTCGAAACGGCCGCGATGCCACCGGTGACCAGGAGCA
GCCGGAGCAGCCCGAACAGCCCGAACAGCCCGAATGGCCATCCCCGGGCG
TCGCCGTGGTGTACTCTCCAATGGCCGCGCCCGCCCCTCGCAGAGCCCCC
GTGAGCCCCGCCCTCCCGGGCGCCCCGGTCTCCTCCTCCGCGGCGGCCGC
CGCGGCCGCCGAAGCACACGCTGCCGCCAACACGACGGTTACTCGGCAGG
ATTCACGTCCGTGGCCGGCACCGACGAAGCTCGAAACGGCCGCGATGCCA
CCGGTGACCAGGAGCAGCCGGAGCAGCCCGAACAGCCCGAACAGCCCGAA
TGGCCATCCCCGGGCGTCGCCGTGGTGTACTCTCCAATGGCCGCGCCCGC
CCCTCGCAGAGCCCCCGTGAGCCCCGCCCTCCCGGGCGCCCCGGTCTCCT
CCTCCGCGGCGGCCGCCGCGGCCGCCGAAGCACACGCTGCCGCC
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