mRNA_L-elsbetiae_contig7444.16333.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7444.16333.1
Unique NamemRNA_L-elsbetiae_contig7444.16333.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7444.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7444contigL-elsbetiae_contig7444:4945..6342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size548
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.2978575-CDS-L-elsbetiae_contig7444:4946..54371622816829.2978575-CDS-L-elsbetiae_contig7444:4946..5437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7444 4947..5437 -
1691683845.12755-CDS-L-elsbetiae_contig7444:4946..54371691683845.12755-CDS-L-elsbetiae_contig7444:4946..5437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7444 4947..5437 -
1622816829.3095908-CDS-L-elsbetiae_contig7444:6287..63421622816829.3095908-CDS-L-elsbetiae_contig7444:6287..6342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7444 6288..6342 -
1691683845.1389344-CDS-L-elsbetiae_contig7444:6287..63421691683845.1389344-CDS-L-elsbetiae_contig7444:6287..6342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7444 6288..6342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7444.16333.1prot_L-elsbetiae_contig7444.16333.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7444 4947..6342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7444.16333.1

>prot_L-elsbetiae_contig7444.16333.1 ID=prot_L-elsbetiae_contig7444.16333.1|Name=mRNA_L-elsbetiae_contig7444.16333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
GWFFLSRFNWPRSLLRTPAAGTTGFFSLGSGRRVASHRTASHRSHPALPV
LQMTPSPPRPRRSSSPSRRASSPPPRRRASTSPPPRSPSLRAPRPAHIVA
AESTGAGGGGGGGDNGDDNKALVSAEVADGIEDWMSRKRRESPCAGSARD
VMDVDMDVGMEVEGVRTGDGGEDGRREGGEVV
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mRNA from alignment at L-elsbetiae_contig7444:4945..6342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7444.16333.1 ID=mRNA_L-elsbetiae_contig7444.16333.1|Name=mRNA_L-elsbetiae_contig7444.16333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig7444:4945..6342- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGGTTCTTCCTCTCTCGTTTCAACTGGCCGCGTTCTCTGCTGCGTAC
ACCTGGTGAGTGTGAAGAGTACCAAAAAATGGACTCTCTCTGTTTTTTAT
TCTGCTATCTGTATCCGGGATCTCCATATTTCCTTGCCGTTGTTTGCTGT
TCAGTTGTAGTCTACCGGCGTAGCGGTAGACAGCAGTAGTATTGCCCCCG
TGATTTTCTATTCAAGGCTATATTGTTATTCTATCCCTCTTACACGTTGT
AGATGATCGTACGTACATAATGTTTGATACCGGACCTATAATATACATCC
CAGAGGGCACAACACATGTTTGACGGGAGCTACTCGTTGTCCGAAATCAA
CAACGGGCACGACACGGGGCGCGTGTATCCGCACCTTACTTTCCTGGCGG
CTCCTTTCTTTCCGTCGGACGCCAGGCGCACACAATTGTCCATTCACTGT
TGGCGGCCTAAGGAAGACGCGATGGACATAACACAGGCCACATAATATAT
CCTAAGGTATCTCCTTGATAAAAACTAAAACTTCGCTGGAACACACACAG
CAGAAGAGTTATTCCTGTTCCCCCGAACAAGACCACGGCCGCTGCTTCGG
GCGTCCTCTGGGCACCAGCAATAGTCTTCGCCTCTCATCGAAATTGGGCA
CACCCTGCCTATTCATATTTCTGGGAGAAAACTAAGATTTTATAATCAAC
CCTCTGCTGGCGGTCTATTTGCTTTGCGGACCGCTCTCCACCCCCTCCAG
GTCTACGATTCACAAACGCCCCTTCCCTTCCCTTCGATCCATCCATCCCT
CTTTTGATATACATACATATAAGCCACAGATTGACCCTCCCCGCACCCGC
TCACCCCCCCCCCCCTCGCCCCGCTGAACCAAAATCGAACTACGCATTGA
AATAGCAGCAGGCACGACAGGATTTTTCAGCCTCGGTTCCGGCCGTCGTG
TGGCATCGCATCGCACCGCATCACATCGGTCGCACCCGGCGCTCCCTGTT
CTGCAAATGACGCCATCCCCGCCCCGCCCCCGCCGATCCTCTTCCCCTTC
CCGGCGGGCGTCTTCCCCCCCGCCCCGCCGCCGCGCATCGACGTCGCCAC
CGCCGAGGTCGCCCTCTCTCCGCGCACCTCGGCCCGCTCACATCGTAGCT
GCGGAATCAACCGGTGCCGGCGGCGGCGGCGGCGGCGGTGACAACGGCGA
TGACAACAAGGCTTTAGTCAGCGCTGAAGTCGCCGACGGCATCGAGGACT
GGATGAGCCGGAAACGGCGAGAGTCGCCCTGCGCTGGGAGCGCTCGGGAC
GTGATGGATGTGGACATGGACGTGGGCATGGAAGTCGAGGGAGTCCGCAC
TGGAGACGGGGGCGAAGATGGGAGGCGGGAGGGCGGAGAGGTGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7444:4945..6342-

>mRNA_L-elsbetiae_contig7444.16333.1 ID=mRNA_L-elsbetiae_contig7444.16333.1|Name=mRNA_L-elsbetiae_contig7444.16333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig7444:4945..6342- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGGTTCTTCCTCTCTCGTTTCAACTGGCCGCGTTCTCTGCTGCGTAC
ACCTGGGTTGGTTCTTCCTCTCTCGTTTCAACTGGCCGCGTTCTCTGCTG
CGTACACCTGCAGCAGGCACGACAGGATTTTTCAGCCTCGGTTCCGGCCG
TCGTGTGGCATCGCATCGCACCGCATCACATCGGTCGCACCCGGCGCTCC
CTGTTCTGCAAATGACGCCATCCCCGCCCCGCCCCCGCCGATCCTCTTCC
CCTTCCCGGCGGGCGTCTTCCCCCCCGCCCCGCCGCCGCGCATCGACGTC
GCCACCGCCGAGGTCGCCCTCTCTCCGCGCACCTCGGCCCGCTCACATCG
TAGCTGCGGAATCAACCGGTGCCGGCGGCGGCGGCGGCGGCGGTGACAAC
GGCGATGACAACAAGGCTTTAGTCAGCGCTGAAGTCGCCGACGGCATCGA
GGACTGGATGAGCCGGAAACGGCGAGAGTCGCCCTGCGCTGGGAGCGCTC
GGGACGTGATGGATGTGGACATGGACGTGGGCATGGAAGTCGAGGGAGTC
CGCACTGGAGACGGGGGCGAAGATGGGAGGCGGGAGGGCGGAGAGGTGGT
GCAGCAGGCACGACAGGATTTTTCAGCCTCGGTTCCGGCCGTCGTGTGGC
ATCGCATCGCACCGCATCACATCGGTCGCACCCGGCGCTCCCTGTTCTGC
AAATGACGCCATCCCCGCCCCGCCCCCGCCGATCCTCTTCCCCTTCCCGG
CGGGCGTCTTCCCCCCCGCCCCGCCGCCGCGCATCGACGTCGCCACCGCC
GAGGTCGCCCTCTCTCCGCGCACCTCGGCCCGCTCACATCGTAGCTGCGG
AATCAACCGGTGCCGGCGGCGGCGGCGGCGGCGGTGACAACGGCGATGAC
AACAAGGCTTTAGTCAGCGCTGAAGTCGCCGACGGCATCGAGGACTGGAT
GAGCCGGAAACGGCGAGAGTCGCCCTGCGCTGGGAGCGCTCGGGACGTGA
TGGATGTGGACATGGACGTGGGCATGGAAGTCGAGGGAGTCCGCACTGGA
GACGGGGGCGAAGATGGGAGGCGGGAGGGCGGAGAGGTGGTG
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