mRNA_L-elsbetiae_contig7441.16331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7441.16331.1
Unique NamemRNA_L-elsbetiae_contig7441.16331.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7441.16331.1 vs. uniprot
Match: D7FP32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP32_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 5.120e-24
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 2 
Query:   17 EDRLE-DAGENDLCVKIELGEGKEPLRFWSPMDVFSRFWPLLLWAAASSSEIEDGLLYRWMQDASECDAELPRGAALWELVAGGKEVKNEAGEV-TRPAKEPTLQAKKGEL 343
            ED  E D  E+DLCVK+++GEG E ++F SP ++FS FWPLLLWA +SS EIEDGLLYRW++DAS   A   +    ++LVAG    K++ GE  T  A+  TL+A+KG +
Sbjct:   21 EDEFEGDRKEDDLCVKVDMGEGVEAVKFGSPDELFSEFWPLLLWAVSSSDEIEDGLLYRWIKDASGYGASFSKSNKFFKLVAGETVAKDKTGEAATEAAESVTLRAQKGGM 131
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BLAST of mRNA_L-elsbetiae_contig7441.16331.1 vs. uniprot
Match: A0A6H5JLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.260e-18
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:   38 GENDLCVKIELGEGKEPLRFWSPMDVFSRFWPLLLWAAASSSEIEDGLLYRWMQDASECDAELPRGAALWELVAG 262
            G N L VK+++GEG E + F SP ++ S FWPLL WAA+SS EIEDGLLYRWM+DAS+  A   +    ++LVAG
Sbjct:    3 GMNHLFVKVDIGEGVEAVNFGSPHELLSEFWPLLRWAASSSDEIEDGLLYRWMKDASDYGASFSKSNKFFKLVAG 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7441.16331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP32_ECTSI5.120e-2451.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLT9_9PHAE5.260e-1856.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7441contigL-elsbetiae_contig7441:1503..6094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPseudogene
Ec32 orthologEc-10_002290.1
Exons3
Model size2750
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7441.16331.1prot_L-elsbetiae_contig7441.16331.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7441 3811..5175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.088549-UTR-L-elsbetiae_contig7441:1502..38101622816829.088549-UTR-L-elsbetiae_contig7441:1502..3810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 1503..3810 -
1691683844.9622595-UTR-L-elsbetiae_contig7441:1502..38101691683844.9622595-UTR-L-elsbetiae_contig7441:1502..3810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 1503..3810 -
1622816829.1257434-UTR-L-elsbetiae_contig7441:5175..52501622816829.1257434-UTR-L-elsbetiae_contig7441:5175..5250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 5176..5250 -
1691683844.9962626-UTR-L-elsbetiae_contig7441:5175..52501691683844.9962626-UTR-L-elsbetiae_contig7441:5175..5250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 5176..5250 -
1622816829.1369534-UTR-L-elsbetiae_contig7441:6063..60941622816829.1369534-UTR-L-elsbetiae_contig7441:6063..6094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 6064..6094 -
1691683845.012422-UTR-L-elsbetiae_contig7441:6063..60941691683845.012422-UTR-L-elsbetiae_contig7441:6063..6094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7441 6064..6094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.1013184-CDS-L-elsbetiae_contig7441:3810..40861622816829.1013184-CDS-L-elsbetiae_contig7441:3810..4086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7441 3811..4086 -
1691683844.9759223-CDS-L-elsbetiae_contig7441:3810..40861691683844.9759223-CDS-L-elsbetiae_contig7441:3810..4086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7441 3811..4086 -
1622816829.1133747-CDS-L-elsbetiae_contig7441:5115..51751622816829.1133747-CDS-L-elsbetiae_contig7441:5115..5175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7441 5116..5175 -
1691683844.9870708-CDS-L-elsbetiae_contig7441:5115..51751691683844.9870708-CDS-L-elsbetiae_contig7441:5115..5175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7441 5116..5175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7441.16331.1

>prot_L-elsbetiae_contig7441.16331.1 ID=prot_L-elsbetiae_contig7441.16331.1|Name=mRNA_L-elsbetiae_contig7441.16331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MDVFSRFWPLLLWAAASSSEIEDGLLYRWMQDASECDAELPRGAALWELV
AGGKEVKNEAGEVTRPAKEPTLQAKKGELFFPRATNAVRSTYACSTRAFA
GIYWFESEARD*
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mRNA from alignment at L-elsbetiae_contig7441:1503..6094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7441.16331.1 ID=mRNA_L-elsbetiae_contig7441.16331.1|Name=mRNA_L-elsbetiae_contig7441.16331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4592bp|location=Sequence derived from alignment at L-elsbetiae_contig7441:1503..6094- (Laminarionema elsbetiae ELsaHSoW15)
CGAGGAGTGCTTCGACGAGGATCGCCTGGAGGTGAGGCGAGCTCCTGCTG
CTGTGGGAACGATTTCAACGATGTATTGCAGGCACACTTCTACAGTGTGT
ACCTGTTTGTGGTGTCCAGAGGTGTGATTCTCGCACGCATGGTTGCGGTT
TCCAAAGGAGGTGCGTGCAACCGGTGATTTGGGGCAAAGATACACAAAAC
ACGACGCCAGACACGCCTCGTCAAGGGACGTCAAATGCGCAAGAAGTTGC
TTTTACAGCGGAGTGTCCTGGCATGCGGCTTGTTGCTGGTCAAGACCGGC
AGCAAGGTTACATAACACGAGTTTGGCTCATGTTTGGTGTGCGTTTTGCT
CCATCTGCGAGTCGTCTGTTGCATCGATCGGCCGGTGTACCTGCCTTGGC
GAGTGAGGGTCAAAAGGGGTTCGACCTATGCTTTGGGTATGTGCCCTGTC
TTGGACAAAAATACGGCGTCTATTTTGGGCTTTTCGGAAGAGCACGAAGT
TGGTACAAAAATCAATCGCATGTTTGACTTTAGGCAGCACGGGCTCGTGT
CTCGCACGAAACCCGGTGAGTGCTTTCCTCTCTAGATATATTTATTGGAG
CGAGGAAACCGACCCGGGGTCGGCGTTCAACGAAAAAATGGTCGCTCAGT
GACGCGCAAAGGCGGCGCCGCGCAGCAGTTCCACGCACGGGCACACACCA
ACCTTTCGTGGACACCTACAATACATATGTTCCCTTTTTCGTCATTGGTT
TTTCTGTGTTTTGTGTGCCTGCTGCCGTCGCGCCCCCCCCCCTCCTTTTC
CACCCGCGCTCTTCTCGTCCGCGGCGGCGGCGCTCGTCCGACAGGACGCG
GGGGAGAACGACCTCTGCGTCAAGATCGAGCTGGGCGAGGGGAAAGAGCC
GCTCCGGTTCTGGAGCCCGATGGACGTCTTCTCCCGCTTCTGGCCTCTCT
TGCTCTGGGCGGCCGCGTCCTCCAGCGAGGTACAGCAGTCGTTCATCATT
AGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCC
CCCACACAAACAACCCGCGAATTGATACTATAGCGCTGTCGTCTTNNNNN
NNNNNCCTTCCTGGCCTCCCTCTGTCTTGGGCGCCCCCCCCCCCCCGGGA
GTAGCCGGGCCGTTCGCCCTGAGGGCCCCCCCCCCCCCCCCCAACCCCTC
AACAGAAGAAGCAGCATGGTCCGAATGTTAGAAGACTTGGCTTTGGCTTT
GCGCAGGGTCGAATTGACGAACACCACGGCGGTACCACCATTTTTCGTCC
AAGACCCACCGGGGATATCGTTTTCCCCCTAGAATCTCGCGTCCCCCAGA
GCAGACTCGTGTGTCGGCTAAGTTCATATTGTTGTAATTTTTTTTCGATT
CATCTATATTTCAGTGTTCTCATCAGCCTCCGTTTGGAGGCTGAGCGGTT
ACAAGCCTTTAGATCGGTGTTTATTTTGTCGCATCCGCCGGGTGGTCTCT
CTCATGGTGTCCATTTGAAGAGATTAGAGGCCGGTGCGGTGTCCTGCCGC
GAGGATGAACGGACTCTTATTTATCTAATTTATTGCGGCAGTTTCTTGTA
CATTATCGTACTTAAAAAAGTTTTACCATAGACTGGGTAGTAAACAAGGA
ATGTTACTCCATCTACAGCGGTGTTATGTTTCTGTCCTGGGCACGCGTAC
AGTGATAACTGCCCTGCTACGTAGCATTAGCGGGCTCAATAGACCATGAT
ATGATTGTCATCTATTTAGTGTATCGGAAGTACCACTTTATGATCTTGTT
TGTATTCTGCACGAAGACTTCGCAATTCCCTTCTCTCTGCCCATCCATAC
CTACTACGTATGGGTTATTGTTGTTGTTGTTTCTTCACATTAGCTCGTAT
AATCGAGATTGCTAATTCCAAAAAATCTAGCAACTCACGGCCCGTGGTCA
CAAAAGTATGGGTGCATCGGCCTGACGCGATTCCACAAACATCGATTGCA
TGCGACAGATCGAAGACGGTCTGCTGTACCGCTGGATGCAAGACGCTAGC
GAGTGCGATGCCGAGCTCCCGCGCGGCGCCGCGCTGTGGGAGCTGGTAGC
GGGCGGGAAGGAGGTCAAGAACGAGGCCGGGGAGGTAACCCGGCCGGCGA
AGGAGCCCACGCTGCAAGCCAAGAAAGGCGAGTTGTTTTTCCCCAGGGCG
ACGAACGCCGTACGATCGACATACGCATGCAGTACAAGAGCGTTTGCCGG
TATATATTGGTTTGAGTCCGAAGCACGGGATTAATTGATTTCATGAGGGC
AATCACGAACGTGTACATATGCATTGTGAAGGTGTGCCGCGCCCTTCGTT
TTTCGTGCATTTTCGAGTTTTAGCTGAGGGCGCCCAATGAAGATGGCTGA
ACATTTGTATGCTCTTCTATGTTTTCATGGTGCCGTACACCGCCTGGGAC
GCGGGCTCAAGCCTGGCCGGAATGGCCGACTTTGCTGCTGCCTCCGCAAT
CACGGTTAACACAGTACCGAAGCGACTGCGTTTCGGGTGATAACCGGATG
ACCCCTGGCGTTTAGTTTTTCATTTACAAAGTTGTCGAGGGCGATGCCAT
GGGAAGGCGACGAGGGTCTCTCTCGACCGCTGTTTGACGGCAGCGGCTGC
GTGTGTGGAGGAGAGTAAAGAACTAATGCTTGTACGGTAGGAAGTGCGAT
AGAACGCGTTGTCAAATCGGGCCAACTGCTGAAGGGCTACTGCTTTAGAG
GTCTTGCGGTGATGATGTGCAAGGCGAGAGAGAGAGAGAGCCGAGACGAA
ATTAGCCCCACACGCGTTCCCCAGCAAGCAGCATAACATGATATCGACAC
CCCTCTCCTCTTTCAATTTTTACCCTTCCGTCTCTGGAAGAATTTCCTGA
AAGGGGTAAAAACGCGGCACGTGTTCTGCCTTGGCCTCGATATATTGAGA
GGCGAAACTAGTTGATGGGGGACCTACGGCGGTGGTAAAACGTGGGTTTC
ATCTAAATATCTCCTGAACCACAATCACTCGCCGGGTTCGCGAACGTTCC
CCAGAACAGCCCAACGATGGGCGCTTACCCCGTCGTGTATTTTTTGTTTC
AAGTTCACTGAGCAGACGGCCCCCACTCCCTTCTCTTCTCTCCCACTCTT
CCTAATTTGTCTGATGGTCGCAATGGGCCAACCTGGAGTCATGCAAGACA
AGCTATAAGCGCAAGCGAGTTGTGGACCGCCGGTTTGACGGGCCGAAGAA
CCGTCGCACCCGAGACTTTGACGGCTTTGGCGGCTTTGGTGGCCTCTTTG
GCTTGTGACCGGCCGCGCTGTTCTCTCTTCTCCGAATCCCCACGCTACTT
GGCACTCGCGAAGCCCGTGTGTCTCTGCTGATGCGCGGCGCTAGCTGGTA
TCTAGATGACCATCGATCTGGATCACGGATGTGACCTCCTGGGGGGAGGG
TGGTTTCGGTTGCATGTTCAACATGTTGCAGCTGCTGGCGGCCATGGCTG
GGCGTCCCACCTTCTGCGAAGAGTCCATGCCGTCGCGTCGTCTTCCCAAT
CGACAGACAGGACTGCAGGCGCGTGGAGCCCTTTTCCTCAAGGCAAAATC
AATGCTCAATTAAGGAACGCCGCTTAAGGCGTGACTGAGGTGGATGTGCT
ATTATATATAACTGTCAGATCAGGACAAGGTTCAAGATTCCTGTATTTTC
CGACCGTCGTGGAGCAAGATAACACCTGACGCATGCATCCGAAGGGTACC
AGCAACCCCTCTACAGAGCTGTACCACATCAAATAGGAACAATAGGAGAT
AAATCCGTCGGCATTCGGTTTCTTGTTAGAGGCGCCTGCGTTGTAGGAGT
ATCATTTCTGCCTCTCTTGACACTGTATTGTACGGTGACTTTGAGTAATA
CTTCTCCTTCGAAGTGTAACTTGTATGCAGGAGTTTCGCTCGCCGTAGTA
GTCCTTGGGTCGTCATCGGTGGGCGTTGGGGCAAGGCGGGGGGGGTCGTT
GCACATTAATTTAAGATGTGTTGGTGGCTCAGCGTTAGATGTGTTGACGC
CTCAGCTCCAGCGTGTCGAGGTTTAGAGACCTCTTCGTTGTGGCCGCTTT
ACTGTTGAAGGCGTTTATTTGGCGCGCTGCGGGTATTCGTGTAACTGCTG
TTGCTCGCTGACTCACGTCCCGAAAACCAAATGTGCTTCTGGCTCGCGTA
TCCCGGCCGGTCACGATCTTATTCGGCCATCTCATTTTTTTTAGAGCAAA
GAGAATACCCACCAGTAGTCGCCGCGGGAGTTGGTGCCCGCGGGGTCAAA
TTGACAAACCCCATGGTATACGATGGAGATGGTTTATCCCTAGAACCTGA
CGCCCCTCGGGAAACTCCGGTGGTGATTTGCCCTGTGCTTGTGGTGGTGT
GTCGCTGCGGACGGTTTTTTACGGGGGGAACGTAGACAATAAAGACCCAT
CCCCATTAATGATGTACGCGAGCCCCCGCGGCTGCCCTCGCAACGGGCAA
TCACGGATCACACTACACGCGACCACACGCGTTGCAGGGGGCCCCGTACT
GCTGTTTTCCACGATTTTTCATGCCAGGCGAGCCTTTCTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7441:1503..6094-

>mRNA_L-elsbetiae_contig7441.16331.1 ID=mRNA_L-elsbetiae_contig7441.16331.1|Name=mRNA_L-elsbetiae_contig7441.16331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig7441:1503..6094- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTCTTCTCCCGCTTCTGGCCTCTCTTGCTCTGGGCGGCCGCGTC
CTCCAGCGAGATGGACGTCTTCTCCCGCTTCTGGCCTCTCTTGCTCTGGG
CGGCCGCGTCCTCCAGCGAGATCGAAGACGGTCTGCTGTACCGCTGGATG
CAAGACGCTAGCGAGTGCGATGCCGAGCTCCCGCGCGGCGCCGCGCTGTG
GGAGCTGGTAGCGGGCGGGAAGGAGGTCAAGAACGAGGCCGGGGAGGTAA
CCCGGCCGGCGAAGGAGCCCACGCTGCAAGCCAAGAAAGGCGAGTTGTTT
TTCCCCAGGGCGACGAACGCCGTACGATCGACATACGCATGCAGTACAAG
AGCGTTTGCCGGTATATATTGGTTTGAGTCCGAAGCACGGGATTAAATCG
AAGACGGTCTGCTGTACCGCTGGATGCAAGACGCTAGCGAGTGCGATGCC
GAGCTCCCGCGCGGCGCCGCGCTGTGGGAGCTGGTAGCGGGCGGGAAGGA
GGTCAAGAACGAGGCCGGGGAGGTAACCCGGCCGGCGAAGGAGCCCACGC
TGCAAGCCAAGAAAGGCGAGTTGTTTTTCCCCAGGGCGACGAACGCCGTA
CGATCGACATACGCATGCAGTACAAGAGCGTTTGCCGGTATATATTGGTT
TGAGTCCGAAGCACGGGATTAA
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