mRNA_L-elsbetiae_contig7440.16330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7440.16330.1
Unique NamemRNA_L-elsbetiae_contig7440.16330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.680e-29
Identity = 67/106 (63.21%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXGEKVKGESRVVLFRGNYGEYAKQAAGSG 800
            DEPTNDLDVDTLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFEDG                                VKGESRVV+F+GN+GEY KQA G G
Sbjct:  637 DEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGGGGGDG-------------------------NVKGESRVVVFQGNHGEYVKQAGGRG 717
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.140e-28
Identity = 70/106 (66.04%), Postives = 75/106 (70.75%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXGEKVKGESRVVLFRGNYGEYAKQAAGSG 800
            DEPTNDLDVDTLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFEDG   XXX                          VKGESRVV+F+GN+GEY+KQA G G
Sbjct:  464 DEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGXXXXXXA-------------------------VKGESRVVVFQGNHGEYSKQAGGRG 544
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A7S3TQF7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQF7_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 2.620e-17
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFE 623
            DEPTNDLDVDTLRSLEEAI  FAGS +IVSHDRWFLDRVC HT+AF+
Sbjct:  115 DEPTNDLDVDTLRSLEEAIGAFAGSAVIVSHDRWFLDRVCDHTLAFD 161
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A3C1GLT0_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3C1GLT0_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 3.830e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:  474 FFEDEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGS 632
            F  DEPTNDLDVDTLR+LE+A+ GFAG VL++SHDRWFLDR+ +H +AFED S
Sbjct:   79 FLLDEPTNDLDVDTLRALEDALLGFAGCVLVISHDRWFLDRIATHMLAFEDDS 131
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A1G3RPZ2_9SPIR (Energy-dependent translational throttle protein EttA n=1 Tax=Spirochaetes bacterium RIFOXYC1_FULL_54_7 TaxID=1802198 RepID=A0A1G3RPZ2_9SPIR)

HSP 1 Score: 90.9 bits (224), Expect = 4.740e-17
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDG 629
            DEPTNDLDV+TLR+LEEA+ GFAGS L+VSHDRWFLDRVC+H +AFEDG
Sbjct:  474 DEPTNDLDVNTLRALEEALDGFAGSALVVSHDRWFLDRVCTHLLAFEDG 522
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A2N1SD80_9SPIR (Energy-dependent translational throttle protein EttA n=2 Tax=unclassified Spirochaetes TaxID=1130380 RepID=A0A2N1SD80_9SPIR)

HSP 1 Score: 90.9 bits (224), Expect = 4.930e-17
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDG 629
            DEPTNDLDV+TLR+LEEA+ GFAGS L+VSHDRWFLDRVC+H +AFEDG
Sbjct:  474 DEPTNDLDVNTLRALEEALDGFAGSALVVSHDRWFLDRVCTHILAFEDG 522
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: D8R6C2_SELML (ATP-binding cassette transporter, subfamily F, member 5, SmABCF5 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R6C2_SELML)

HSP 1 Score: 90.5 bits (223), Expect = 6.520e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGSS 635
            DEPTNDLDVDTLR+LEEAIH FAGSV+++SHDRWFLDR+ +H +AFE GS+
Sbjct:  491 DEPTNDLDVDTLRTLEEAIHNFAGSVIVISHDRWFLDRIATHILAFEGGST 541
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A2N2K314_9DELT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-10 TaxID=2013737 RepID=A0A2N2K314_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 1.170e-16
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXGEKVKGESRVVLFRGNYGEY 776
            DEPTNDLDV+TLR+LE+A+  FAG V+++SHDRWFLDR+C+H +AFE                                    GES+V+ F GNY EY
Sbjct:   73 DEPTNDLDVNTLRALEDALENFAGCVVVISHDRWFLDRICTHILAFE------------------------------------GESKVLFFDGNYSEY 134
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: UPI0019CA5A29 (Energy-dependent translational throttle protein EttA n=1 Tax=Bdellovibrio sp. TaxID=28201 RepID=UPI0019CA5A29)

HSP 1 Score: 83.2 bits (204), Expect = 1.170e-16
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGS 632
            DEPTNDLDV+T+R+LEEA++ F GS +++SHDRWFLDRVC+HT+AFE  S
Sbjct:   23 DEPTNDLDVNTMRALEEALNEFGGSAIVISHDRWFLDRVCTHTMAFEGDS 72
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BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Match: A0A257R1H3_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Legionella sp. 21-45-4 TaxID=1970394 RepID=A0A257R1H3_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16
Identity = 42/98 (42.86%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  483 DEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAFEDGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXGEKVKGESRVVLFRGNYGEY 776
            DEP+NDLDV+TLR+LEEA+  F GS ++VSHDRWFLDR+C+H +AFE                                    G+S+VV F GNY +Y
Sbjct:   10 DEPSNDLDVETLRALEEALLNFPGSAIVVSHDRWFLDRICTHLLAFE------------------------------------GDSKVVFFEGNYSDY 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7440.16330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQX9_9PHAE8.680e-2963.21ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FX01_ECTSI1.140e-2866.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3TQF7_EMIHU2.620e-1785.11Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A3C1GLT0_9BACT3.830e-1771.70Energy-dependent translational throttle protein Et... [more]
A0A1G3RPZ2_9SPIR4.740e-1781.63Energy-dependent translational throttle protein Et... [more]
A0A2N1SD80_9SPIR4.930e-1781.63Energy-dependent translational throttle protein Et... [more]
D8R6C2_SELML6.520e-1776.47ATP-binding cassette transporter, subfamily F, mem... [more]
A0A2N2K314_9DELT1.170e-1643.88Energy-dependent translational throttle protein Et... [more]
UPI0019CA5A291.170e-1670.00Energy-dependent translational throttle protein Et... [more]
A0A257R1H3_9GAMM1.660e-1642.86Uncharacterized protein (Fragment) n=1 Tax=Legione... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7440contigL-elsbetiae_contig7440:5312..6435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog2880.D7FX01
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size803
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7440.16330.1prot_L-elsbetiae_contig7440.16330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7440 5312..6115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.0158353-CDS-L-elsbetiae_contig7440:5311..56281622816829.0158353-CDS-L-elsbetiae_contig7440:5311..5628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7440 5312..5628 -
1691683844.9209404-CDS-L-elsbetiae_contig7440:5311..56281691683844.9209404-CDS-L-elsbetiae_contig7440:5311..5628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7440 5312..5628 -
1622816829.035129-CDS-L-elsbetiae_contig7440:5949..61151622816829.035129-CDS-L-elsbetiae_contig7440:5949..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7440 5950..6115 -
1691683844.9365642-CDS-L-elsbetiae_contig7440:5949..61151691683844.9365642-CDS-L-elsbetiae_contig7440:5949..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7440 5950..6115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.0496738-UTR-L-elsbetiae_contig7440:6115..64351622816829.0496738-UTR-L-elsbetiae_contig7440:6115..6435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7440 6116..6435 -
1691683844.9523296-UTR-L-elsbetiae_contig7440:6115..64351691683844.9523296-UTR-L-elsbetiae_contig7440:6115..6435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7440 6116..6435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7440.16330.1

>prot_L-elsbetiae_contig7440.16330.1 ID=prot_L-elsbetiae_contig7440.16330.1|Name=mRNA_L-elsbetiae_contig7440.16330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MYAKGSRVAICPLLLWTSYLPPLLPLLLSLLLLVPLPLLLLLLLLLGGGF
GFFEDEPTNDLDVDTLRSLEEAIHGFAGSVLIVSHDRWFLDRVCSHTIAF
EDGSSSSSGIGSSSSSSGSGGDGGGGGGDGSGGEKVKGESRVVLFRGNYG
EYAKQAAGSG*
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mRNA from alignment at L-elsbetiae_contig7440:5312..6435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7440.16330.1 ID=mRNA_L-elsbetiae_contig7440.16330.1|Name=mRNA_L-elsbetiae_contig7440.16330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1124bp|location=Sequence derived from alignment at L-elsbetiae_contig7440:5312..6435- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGTGAACGCAACCGAGTGCACCTCGCCAAGGTTCTCAGGGAGGGCC
ACAACTTCTTGCTGCTGGGTAGGCTGTTTGTTGGTGTTCTGGACTCGAGG
TTTCGCCGCTTGCCAGCATCGATAGAAGACAACAACAACACCGGTACCTA
ACAACACCGGTACCTGAACCTATTCCCAAAAACACACGCCTGGACCATTA
TCCCCTTCGCAGCCTCAAGACAGATCCCTCAAGACAGATCGAGGGGAATG
TTTAAGATTCATCTCCCCCGTTGTGTGCGGACAGTTGGGGTTGTGCTTGA
TCTCCCATTACCACCGGTCTATGTATGCGAAGGGATCACGTGTAGCTATT
TGCCCCTTGCTGTTATGGACTTCTTACCTTCCGCCACTGCTGCCGTTGCT
GTTGTCGCTGCTGCTGTTGGTACCGCTACCGCTTCTGCTGCTGCTGCTGC
TGCTGCTGGGTGGTGGTTTTGGGTTCTTTGAAGACGGTAAGGCGCGAGCT
AAGCTGTGTTGTTCCACGCAGAGGGTGACAGGTGTTTTGGCGTGTCTGAA
GAGAGCGATAGCCCAGAAGCATCGGTCCACGGTTTTTCGACGCGATGCTA
TTGCACCCACCACTTGTTTGCAAAAATATCCTTGTTAACACGTGCGTAGC
TCGTGTGCTTGCGTGCGTGTGCGCCACAGACCCCCCACCTTCATGGTGTG
CGAGGAGCTCACCGCCAAGCCCTTCCTCATTAAGTGATCCCGTCGGCGTG
ATGTACCCCACTGCTTTTATTTTGTTTTCTTGTCTCTTCTTCTTTTTCGT
TTCTCAGAACCGACCAACGATCTCGATGTGGACACGCTTCGAAGCCTCGA
GGAGGCGATCCACGGCTTCGCTGGCAGCGTTCTCATCGTGAGCCACGACC
GCTGGTTCCTCGACCGCGTCTGCTCGCACACGATAGCGTTCGAGGATGGC
TCCAGCAGTAGTAGTGGCATCGGTAGCAGCAGCAGCAGTAGTGGTAGTGG
TGGTGATGGTGGTGGCGGCGGCGGCGACGGCAGCGGCGGGGAGAAAGTTA
AGGGCGAGAGCAGGGTGGTACTCTTCCGGGGCAACTACGGAGAGTACGCC
AAGCAGGCAGCGGGGTCGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7440:5312..6435-

>mRNA_L-elsbetiae_contig7440.16330.1 ID=mRNA_L-elsbetiae_contig7440.16330.1|Name=mRNA_L-elsbetiae_contig7440.16330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig7440:5312..6435- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCGAAGGGATCACGTGTAGCTATTTGCCCCTTGCTGTTATGGAC
TTCTTACCTTCCGCCACTGCTGCCGTTGCTGTTGTCGCTGCTGCTGTTGG
TACCGCTACCGCTTCTGCTGCTGCTGCTGCTGCTGCTGGGTGGTGGTTTT
GGGTTCTTTGAAGACGATGTATGCGAAGGGATCACGTGTAGCTATTTGCC
CCTTGCTGTTATGGACTTCTTACCTTCCGCCACTGCTGCCGTTGCTGTTG
TCGCTGCTGCTGTTGGTACCGCTACCGCTTCTGCTGCTGCTGCTGCTGCT
GCTGGGTGGTGGTTTTGGGTTCTTTGAAGACGAACCGACCAACGATCTCG
ATGTGGACACGCTTCGAAGCCTCGAGGAGGCGATCCACGGCTTCGCTGGC
AGCGTTCTCATCGTGAGCCACGACCGCTGGTTCCTCGACCGCGTCTGCTC
GCACACGATAGCGTTCGAGGATGGCTCCAGCAGTAGTAGTGGCATCGGTA
GCAGCAGCAGCAGTAGTGGTAGTGGTGGTGATGGTGGTGGCGGCGGCGGC
GACGGCAGCGGCGGGGAGAAAGTTAAGGGCGAGAGCAGGGTGGTACTCTT
CCGGGGCAACTACGGAGAGTACGCCAAGCAGGCAGCGGGGTCGGGGTGAA
ACCGACCAACGATCTCGATGTGGACACGCTTCGAAGCCTCGAGGAGGCGA
TCCACGGCTTCGCTGGCAGCGTTCTCATCGTGAGCCACGACCGCTGGTTC
CTCGACCGCGTCTGCTCGCACACGATAGCGTTCGAGGATGGCTCCAGCAG
TAGTAGTGGCATCGGTAGCAGCAGCAGCAGTAGTGGTAGTGGTGGTGATG
GTGGTGGCGGCGGCGGCGACGGCAGCGGCGGGGAGAAAGTTAAGGGCGAG
AGCAGGGTGGTACTCTTCCGGGGCAACTACGGAGAGTACGCCAAGCAGGC
AGCGGGGTCGGGGTGA
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