mRNA_L-elsbetiae_contig744.16329.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig744.16329.1
Unique NamemRNA_L-elsbetiae_contig744.16329.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig744.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig744contigL-elsbetiae_contig744:29106..30514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size562
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig744.16329.1prot_L-elsbetiae_contig744.16329.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig744 29107..30514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.6457775-CDS-L-elsbetiae_contig744:29106..292151622816828.6457775-CDS-L-elsbetiae_contig744:29106..29215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 29107..29215 -
1691683844.69222-CDS-L-elsbetiae_contig744:29106..292151691683844.69222-CDS-L-elsbetiae_contig744:29106..29215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 29107..29215 -
1622816828.662825-CDS-L-elsbetiae_contig744:29572..298071622816828.662825-CDS-L-elsbetiae_contig744:29572..29807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 29573..29807 -
1691683844.705672-CDS-L-elsbetiae_contig744:29572..298071691683844.705672-CDS-L-elsbetiae_contig744:29572..29807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 29573..29807 -
1622816828.6792328-CDS-L-elsbetiae_contig744:30297..305141622816828.6792328-CDS-L-elsbetiae_contig744:30297..30514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 30298..30514 -
1691683844.7170537-CDS-L-elsbetiae_contig744:30297..305141691683844.7170537-CDS-L-elsbetiae_contig744:30297..30514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig744 30298..30514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig744.16329.1

>prot_L-elsbetiae_contig744.16329.1 ID=prot_L-elsbetiae_contig744.16329.1|Name=mRNA_L-elsbetiae_contig744.16329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
SRSSRSRSIEHHTDETGNAAMGGQPSRAEGEGEGGEGAAGGERDQQRQPG
VEVGEMALENEAAGSRQQETTGAPARDDDGNGGSRINASGSPPSPRKSPA
FLGGGGEALETPASPRTGSDLFGNIASDDTVALELADKEPSVNSSNDTGL
RGDDTGGYDNPGSISGGVKPVVAGAGPAPGVEPGEIR
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mRNA from alignment at L-elsbetiae_contig744:29106..30514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig744.16329.1 ID=mRNA_L-elsbetiae_contig744.16329.1|Name=mRNA_L-elsbetiae_contig744.16329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1409bp|location=Sequence derived from alignment at L-elsbetiae_contig744:29106..30514- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGAGCAGCAGGAGCAGGAGCATCGAGCACCATACGGACGAAACCGG
TAACGCGGCCATGGGTGGCCAACCCTCCCGAGCAGAAGGAGAAGGAGAAG
GAGGAGAAGGAGCCGCTGGCGGTGAACGCGACCAGCAGCGCCAGCCTGGA
GTGGAAGTGGGCGAGATGGCTCTCGAAAACGAAGCCGCGGGGTCGCGGCA
ACAAGAGACTACCGGAGGTATGTATGGCGGACGCAGATCAGCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCTTTCTCGTCTCCCGGCCCGCTCCTTGCCCC
TCTCCCCTCCTGTCCCNNNNNNNNNNGGGGGGGTGTGTCTGGAAAAAAAA
TCCGCGGGGTTTTTGTCAAAAAAAACCACCGGGGGCATTCAGGGCGCACC
CCCCCCCCCCCCCCCCCCCCCCCCACTCTTTCGTTTCGTTGCGCTGCTGC
ACGTCCTTTCTTGCACAGCTACCGGTATGTACCCTTATCCCCGGCGCCGC
CCTATTTTGGTATGCAGTTTATTACCTTCCACCCTTGCGGGTTTTGAGGC
GTCCAGAGTTCTGGTGCGCTGGTTGTCTTTCGGGGTATGGTGACCATTCA
GCACGGCGTTGCTCGGCGTGGAAGCTTTTCATGTCACAGCAGTTTCTGGT
GCCAAACCCAACCCAACCACAACACGCCCCCGCAAAATTCCACGGCAACG
GTCTCAGCGCCAGCCAGAGACGACGACGGCAACGGCGGCAGCAGGATCAA
CGCCTCGGGCAGTCCACCATCGCCACGCAAAAGCCCCGCATTTCTCGGCG
GCGGCGGCGAAGCTCTGGAGACCCCCGCCTCCCCCCGGACTGGATCAGAC
CTCTTCGGTAATATCGCCTCCGACGACACCGTCGCATTGGAACTGGCGGA
TAAGGAGCCCTCCGTCAACAGCAGCAACGACACCGGTCTCAGGTGTGTTC
GCGAGTGTGTGTTGATGCCATTGGTGTATGTGAACGTAGAGCGCGCTAAA
ATCGGCCAATCAAAGTAAGGAGAACCGGAAATATCTCGTGCTTTCGTTGA
CCGTGCTCGTGTATGTGTTTGTGTGTGTGTGTGTGGGGGGGGGGGGGGGG
GGGCGGCTGCGGGGTGAGGGAGACTGGCACTCGAAGTTGCTGCGATCCGA
TCTGACGTAAGTGGTCGTGGCTCCGGCAATACAAACGTCATCCTACTGTA
ACGCACCCGAGGACATGACCTACCGGCTCTGAACGCACCTTTTTTTCCTG
TCCGGTGCGACGGCGATGGCGACGGCGACGGCGACGTTCCCCTTCGCAGA
GGCGACGATACCGGCGGATACGACAACCCCGGCAGCATCAGCGGCGGCGT
CAAACCCGTCGTTGCCGGCGCTGGGCCGGCCCCAGGTGTTGAACCTGGTG
AGATCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig744:29106..30514-

>mRNA_L-elsbetiae_contig744.16329.1 ID=mRNA_L-elsbetiae_contig744.16329.1|Name=mRNA_L-elsbetiae_contig744.16329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig744:29106..30514- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGAGCAGCAGGAGCAGGAGCATCGAGCACCATACGGACGAAACCGG
TAACGCGGCCATGGGTGGCCAACCCTCCCGAGCAGAAGGAGAAGGAGAAG
GAGGAGAAGGAGCCGCTGGCGGTGAACGCGACCAGCAGCGCCAGCCTGGA
GTGGAAGTGGGCGAGATGGCTCTCGAAAACGAAGCCGCGGGGTCGCGGCA
ACAAGAGACTACCGGAGAGCAGGAGCAGCAGGAGCAGGAGCATCGAGCAC
CATACGGACGAAACCGGTAACGCGGCCATGGGTGGCCAACCCTCCCGAGC
AGAAGGAGAAGGAGAAGGAGGAGAAGGAGCCGCTGGCGGTGAACGCGACC
AGCAGCGCCAGCCTGGAGTGGAAGTGGGCGAGATGGCTCTCGAAAACGAA
GCCGCGGGGTCGCGGCAACAAGAGACTACCGGAGCGCCAGCCAGAGACGA
CGACGGCAACGGCGGCAGCAGGATCAACGCCTCGGGCAGTCCACCATCGC
CACGCAAAAGCCCCGCATTTCTCGGCGGCGGCGGCGAAGCTCTGGAGACC
CCCGCCTCCCCCCGGACTGGATCAGACCTCTTCGGTAATATCGCCTCCGA
CGACACCGTCGCATTGGAACTGGCGGATAAGGAGCCCTCCGTCAACAGCA
GCAACGACACCGGTCTCAGCGCCAGCCAGAGACGACGACGGCAACGGCGG
CAGCAGGATCAACGCCTCGGGCAGTCCACCATCGCCACGCAAAAGCCCCG
CATTTCTCGGCGGCGGCGGCGAAGCTCTGGAGACCCCCGCCTCCCCCCGG
ACTGGATCAGACCTCTTCGGTAATATCGCCTCCGACGACACCGTCGCATT
GGAACTGGCGGATAAGGAGCCCTCCGTCAACAGCAGCAACGACACCGGTC
TCAGAGGCGACGATACCGGCGGATACGACAACCCCGGCAGCATCAGCGGC
GGCGTCAAACCCGTCGTTGCCGGCGCTGGGCCGGCCCCAGGTGTTGAACC
TGGTGAGATCAGGAGGCGACGATACCGGCGGATACGACAACCCCGGCAGC
ATCAGCGGCGGCGTCAAACCCGTCGTTGCCGGCGCTGGGCCGGCCCCAGG
TGTTGAACCTGGTGAGATCAGG
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