mRNA_L-elsbetiae_contig7439.16326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7439.16326.1
Unique NamemRNA_L-elsbetiae_contig7439.16326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 1.830e-151
Identity = 259/396 (65.40%), Postives = 292/396 (73.74%), Query Frame = 1 
Query:    1 MRPAGGVIAAVATAVVATRVSHAFVPP--ASCASSWRMGAAPQRQQHPDTCSAIDNRRFRQASAAATAALPASAPEQAAGEAATASENAELSCSGVGEEVQQKRRWAAGARRALARGAASFATFTLGATALSGLSAGVQHRLNAGDGAAVV-SIPGATKSAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELTDEFNQFGFFASTDSAEFIRESREDKKPIPKPRLGRMWAF 1179
            MRP G  +AAVATAVVA + + AFV P  ASC SS R GA  ++                                                C       + K RWA GARR+LARGAAS ATFT+GATALSG+SA VQHRLN+ DGAAVV SIP A +SAEASV +PF KRTV+EKLANLPAFMVTN KGSPYLSPTEP EPQMAVFFTN++DAK+ L EMVQ   Y++ ARILVVSMEKAYGMVKAGP+ TG+Q D+G +E MDFKLE DMHSF KA++LGLDVSPAA  I +PVFY EGLE+KRDGGLV+PLFMDPADLV AWKKA ASNPDMPA PTVKVFNMPDVIVAMELTDEFNQFGFFAST+ AEFI+++R+ +KP PKPRLGRMWAF
Sbjct:    1 MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXHCPPADAAREGKGRWA-GARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF 389
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A6H5L2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U4_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.280e-71
Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:  700 VSMEKAYGM--VKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELTDEFNQFGFFASTDSAEFIRESREDKKPIPKPRLGRMWAF 1179
            +S  + +G   V    R+  +Q DDG +E MDFKLE DMHSF KA++LGLDVSPAA    IPVFYAEGLE+KRDGGLV+PLFMDPADLV AWKKA ASNPDMPA PTVKVFNMPDVIVAMELTDEFNQFGFFAST+ AEFI+++R+ ++P PKPRLGRMWAF
Sbjct:    1 MSAARGFGFLTVSTPARTPRYQNDDGVDEMMDFKLEPDMHSFQKARRLGLDVSPAAANTDIPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKATASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARRPFPKPRLGRMWAF 162
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 8.560e-62
Identity = 143/254 (56.30%), Postives = 165/254 (64.96%), Query Frame = 1 
Query:    1 MRPAGGVIAAVATAVVATRVSHAFVPPA--SCASSWRMGAAPQRQQHPDTCSAIDNRRFRQASAAATAALPASAPEQAAGEAATASENAELSCSGVGEEVQQKRRWAAGARRALARGAASFATFTLGATALSGLSAGVQHRLNAGDGAAVV-SIPGATKSAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTG 753
            MRP G  +AAVATAVVA + + AFV P+  SC SS R GA  ++                                             +  C       + K RWA  ARR+LARGAAS ATFT+GATALSG+SA VQHRLN+ DGAAVV SIP A +SAEASV +PF KRTV+EKLANLPAFMVTN KGSPYLSPT+P EPQMAVFFTN++DAK+ L EMVQ   Y++ ARILVVSMEKAYGMVKAGP+ TG
Sbjct:    1 MRPTGRALAAVATAVVAAKGAQAFVAPSGPSCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXDDHCPPADAAREGKGRWAR-ARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTKPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A835Z8Y7_9STRA (Tic22-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.340e-43
Identity = 110/270 (40.74%), Postives = 165/270 (61.11%), Query Frame = 1 
Query:  325 RRALARGAASFATFTLGATALS-GLSAGVQHRLNAGDGAAVVSIPGATKSAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELTD-EFNQFGFFASTDSAEFIRESR 1128
            ++ LA+ AA FA  T GA ALS G+ +G      +G   + V +P    SAEASVFK F++RT+ EKLAN+PAF + N  G+ YL+  E    Q  +FFT+ EDA D L EM+QSP    +ARIL++ ++KA+ M+K  PR+TG   D G+ E+++F+    +H     +K+ L      Q   +PVFYA GL I ++G  V+P+F D  +L+ AW KA  ++P+MP  P ++V+N+P++++ ME    +   FGF  +  S E I+E R
Sbjct:   19 KKRLAQVAAGFAVATAGAPALSQGIRSG---HSTSGQVLSEVLMP----SAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGG-QQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHP---REKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVR 276
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A0G4ED78_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED78_VITBC)

HSP 1 Score: 131 bits (329), Expect = 3.680e-30
Identity = 79/216 (36.57%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:  490 KPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVK-AGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIP-IPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMEL-TDEFNQFGFFASTDSAEFIRESR 1128
            K FS R +DE+L+++P F++TN+   PYL+   P E Q A+ FT+ E+A   L EMVQ+     +AR+ V+S+EKA+   + A PR TG   +DG+E  M FK         + +  G  V+   ++   IPVF A GL++ ++G  + PLFMD  DL AAW++   + PD P  P V V+N+ DV++  E   +    +G   S+ + +F++++R
Sbjct:   66 KKFSSRPMDERLSSVPVFLITNSYALPYLTQVRPGE-QTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTGIVGEDGKEAVMTFKFHPP-----QVENAGNYVTLLGRRTKMIPVFEATGLDVTKNGDKLCPLFMDLEDLEAAWERMHRARPDTPPKPKVSVYNLLDVLLHRERQANGLGPWGIVPSSKALDFVKKNR 275
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: R7QF31_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF31_CHOCR)

HSP 1 Score: 124 bits (311), Expect = 3.640e-28
Identity = 80/224 (35.71%), Postives = 122/224 (54.46%), Query Frame = 1 
Query:  496 FSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELTDE--FNQFGFFASTDSAEFIRESREDKKPIPKPRL 1161
            FSK+TV EKL+ +P F VTNA G PYL+  + +  Q+ + F +  DA + L++M ++P   D AR+ ++ ++KAY MVKA P+ +G +   G E +M F+   D      A+ L   +        IPVF A+GL +++    V PLF+   DL +AW K   SN D+P   +V V N+  +I  ME   E      GFFA   S E++  ++E   P  + R+
Sbjct:   22 FSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDMKKNPGASD-ARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPDSKQVKAAEGLQRKLRRRRGVEGIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYV--TKEQAGPTGQARM 242
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD)

HSP 1 Score: 101 bits (252), Expect = 2.110e-19
Identity = 65/222 (29.28%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  496 FSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYK-DNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELT------------DEFNQFGFFASTDSAEFIRE 1122
            +S++T+DEKLA +P F VTN  G P+L+  E    Q+ + F +  DA   L ++ +S   + ++ARI V+ +++A+ MVK+ P+ +G +   G E  M F+   +      A+ L         +  +P F A+GL +++    V P+F+D  DL  AW +      D+P  P V+V ++ +VI+ +E               +  +  FF S+ S EF+++
Sbjct:  135 YSRKTLDEKLAQVPVFAVTNESGQPFLAAME-RGTQVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQVEHARSLARKTKQPLVR-GVPCFVAKGLTLRKGKEFVIPVFLDKRDLEDAWSRLRQDMSDLPKHPEVEVGDLIEVILRLEEAAKNPKSLDEKELQDIRRVAFFPSSKSVEFMKQ 354
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: A0A4D9CLW8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLW8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.690e-18
Identity = 81/248 (32.66%), Postives = 120/248 (48.39%), Query Frame = 1 
Query:  469 SAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKA---KKLG----LDVSP----------AAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAP-TVKVFNMPDVIVAMELTDEFNQF-GFFASTDSAEFIRESREDKKPIPKP 1155
            SAEA   KPFS+RT+ EKLA++P F+V N +GSPYL P E     + V F +  DA++ L+ MVQ+P   D AR+LV+ ++K   +V++ PR  G          + F+    +     A   +K+G    LD  P            +   +PVFY   L I +   +V+P+F    DL  AW ++ A      AAP  VK  +   V+  M    E  +  GF AST + E++      K    +P
Sbjct:   47 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQNPQTAD-ARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHG--AAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARP 283
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: W7TG29_9STRA (Tic22-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG29_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-17
Identity = 81/248 (32.66%), Postives = 120/248 (48.39%), Query Frame = 1 
Query:  469 SAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKA---KKLG----LDVSP----------AAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAP-TVKVFNMPDVIVAMELTDEFNQF-GFFASTDSAEFIRESREDKKPIPKP 1155
            SAEA   KPFS+RT+ EKLA++P F+V N +GSPYL P E     + V F +  DA++ L+ MVQ+P   D AR+LV+ ++K   +V++ PR  G          + F+    +     A   +K+G    LD  P            +   +PVFY   L I +   +V+P+F    DL  AW ++ A      AAP  VK  +   V+  M    E  +  GF AST + E++      K    +P
Sbjct:  146 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQNPQTAD-ARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHG--AAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARP 382
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BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Match: M1URJ3_CYAM1 (Similar to chloroplast inner membrane protein Tic22 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1URJ3_CYAM1)

HSP 1 Score: 95.5 bits (236), Expect = 2.160e-17
Identity = 64/229 (27.95%), Postives = 118/229 (51.53%), Query Frame = 1 
Query:  496 FSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEPQMAVFFTNLEDAKDNLREMVQSPAYK-DNARILVVSMEKAYGMVKAGPRSTGFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGLEIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVAMELT------------DEFNQFGFFASTDSAEFI-RESREDKK 1140
            +S++T+ EKLA +P F VTN  G P+L+  E    Q+ + F + +DA   L ++ +S   + ++ARI ++ +++A+ MVK+ P+ +G +   G E  M F+   +      A+ +         +  +P F A+GL +++    V P+F+D  DL  AW +      ++P  P ++V ++ +VI+ +E               +  +  FF S+ S EF+ RES +  K
Sbjct:  127 YSRKTLSEKLAQVPVFAVTNESGQPFLAAME-RGLQVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYARTVAKKTKQPTVR-GVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQPEIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMKRESAKQFK 353
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7439.16326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FZH1_ECTSI1.830e-15165.40Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L2U4_9PHAE1.280e-7172.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2Q1_9PHAE8.560e-6256.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8Y7_9STRA1.340e-4340.74Tic22-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A0G4ED78_VITBC3.680e-3036.57Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
R7QF31_CHOCR3.640e-2835.71Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7J7IP27_9RHOD2.110e-1929.28Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A4D9CLW8_9STRA2.690e-1832.66Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TG29_9STRA1.200e-1732.66Tic22-like protein n=1 Tax=Nannochloropsis gaditan... [more]
M1URJ3_CYAM12.160e-1727.95Similar to chloroplast inner membrane protein Tic2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7439contigL-elsbetiae_contig7439:1640..6856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score466.1
Seed ortholog evalue1.6e-128
Seed eggNOG ortholog2880.D7FZH1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Tic22-like family
EggNOG OGs2DZXZ@1,2S7E9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTic22-like
Ec32 orthologEc-23_002870.1
Exons5
Model size2453
Cds size1182
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7439.16326.1prot_L-elsbetiae_contig7439.16326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7439 1640..5585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.4163377-CDS-L-elsbetiae_contig7439:1639..22421622816828.4163377-CDS-L-elsbetiae_contig7439:1639..2242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 1640..2242 +
1691683844.487061-CDS-L-elsbetiae_contig7439:1639..22421691683844.487061-CDS-L-elsbetiae_contig7439:1639..2242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 1640..2242 +
1622816828.427186-CDS-L-elsbetiae_contig7439:3717..38661622816828.427186-CDS-L-elsbetiae_contig7439:3717..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 3718..3866 +
1691683844.5009942-CDS-L-elsbetiae_contig7439:3717..38661691683844.5009942-CDS-L-elsbetiae_contig7439:3717..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 3718..3866 +
1622816828.4373138-CDS-L-elsbetiae_contig7439:4138..42891622816828.4373138-CDS-L-elsbetiae_contig7439:4138..4289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 4139..4289 +
1691683844.511915-CDS-L-elsbetiae_contig7439:4138..42891691683844.511915-CDS-L-elsbetiae_contig7439:4138..4289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 4139..4289 +
1622816828.4473648-CDS-L-elsbetiae_contig7439:4862..49791622816828.4473648-CDS-L-elsbetiae_contig7439:4862..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 4863..4979 +
1691683844.5202682-CDS-L-elsbetiae_contig7439:4862..49791691683844.5202682-CDS-L-elsbetiae_contig7439:4862..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 4863..4979 +
1622816828.4594123-CDS-L-elsbetiae_contig7439:5423..55851622816828.4594123-CDS-L-elsbetiae_contig7439:5423..5585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 5424..5585 +
1691683844.5289226-CDS-L-elsbetiae_contig7439:5423..55851691683844.5289226-CDS-L-elsbetiae_contig7439:5423..5585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7439 5424..5585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.472208-UTR-L-elsbetiae_contig7439:5585..68561622816828.472208-UTR-L-elsbetiae_contig7439:5585..6856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7439 5586..6856 +
1691683844.5468984-UTR-L-elsbetiae_contig7439:5585..68561691683844.5468984-UTR-L-elsbetiae_contig7439:5585..6856Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7439 5586..6856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7439.16326.1

>prot_L-elsbetiae_contig7439.16326.1 ID=prot_L-elsbetiae_contig7439.16326.1|Name=mRNA_L-elsbetiae_contig7439.16326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=394bp
MRPAGGVIAAVATAVVATRVSHAFVPPASCASSWRMGAAPQRQQHPDTCS
AIDNRRFRQASAAATAALPASAPEQAAGEAATASENAELSCSGVGEEVQQ
KRRWAAGARRALARGAASFATFTLGATALSGLSAGVQHRLNAGDGAAVVS
IPGATKSAEASVFKPFSKRTVDEKLANLPAFMVTNAKGSPYLSPTEPNEP
QMAVFFTNLEDAKDNLREMVQSPAYKDNARILVVSMEKAYGMVKAGPRST
GFQRDDGREESMDFKLERDMHSFFKAKKLGLDVSPAAQKIPIPVFYAEGL
EIKRDGGLVQPLFMDPADLVAAWKKAVASNPDMPAAPTVKVFNMPDVIVA
MELTDEFNQFGFFASTDSAEFIRESREDKKPIPKPRLGRMWAF*
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mRNA from alignment at L-elsbetiae_contig7439:1640..6856+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7439.16326.1 ID=mRNA_L-elsbetiae_contig7439.16326.1|Name=mRNA_L-elsbetiae_contig7439.16326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5217bp|location=Sequence derived from alignment at L-elsbetiae_contig7439:1640..6856+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCCTGCCGGCGGAGTGATTGCAGCTGTGGCCACGGCGGTCGTTGC
AACGAGGGTTTCGCACGCTTTTGTGCCGCCAGCGTCTTGCGCTTCTTCAT
GGCGAATGGGAGCGGCGCCTCAACGTCAACAACACCCGGACACGTGCTCG
GCCATCGACAACCGACGCTTTCGACAAGCGAGCGCAGCTGCTACGGCGGC
CTTGCCAGCGTCGGCACCGGAACAGGCGGCAGGCGAAGCCGCAACAGCCT
CAGAAAACGCTGAGCTTTCTTGCTCCGGAGTCGGAGAGGAGGTGCAGCAG
AAAAGGCGGTGGGCGGCAGGAGCCCGCCGAGCTCTCGCTCGAGGCGCGGC
TTCCTTTGCCACCTTCACCCTCGGCGCTACGGCGCTGTCGGGACTGTCCG
CCGGCGTGCAGCACCGGCTCAACGCCGGAGACGGTGCAGCCGTGGTGTCG
ATACCGGGCGCGACGAAGTCGGCGGAGGCATCCGTGTTCAAGCCGTTCAG
CAAGCGCACGGTGGACGAGAAGCTCGCCAACCTGCCGGCCTTCATGGTGA
CCAACGCGAAGGGATCGCCGTACCTCTCTCCCACGGAGCCCAACGAGCCC
CAGGTATCGGACGATTGAAGTCTTGGGCGTACGAGAGGGGGGGGGTGGGG
CGTAGTTGGGGCACAAACAATAGAAGTGCGATGCGGTTTTTATATAGAGG
CTATTGCGCTTACAAGTGTTGTGCTCCGGTCTTCTACTCGGCCCTGGCCC
AAATAGTGTACAATACAACCAGGTACCGTATGTCATTTTGATCAGTTTTT
AAGGGGACCCTTGGGTCGTTCCTCGTCGAGTTCTCGCCGCTGAGTGCCGG
GTTGGTGACGAGGCAATGACTAACCTGTAGCTCCTGTATCCCTCGAGGAT
ATATGAAAAAGGAATGAAGCGAATCGATTCTCCAGTCCCGGCGTATGGTT
GTCTTCCCTGGTCGCAAGTTCGTCGGGACTCCCGATCAAAAAGCATACGC
ATTCTTCAAGACACCCCCACAAAAGCCCCCCTCTCTTCTGGCCTCGCTGG
GACCAGTGCGCCAGCCCTAGAAGCTCACCATAGAGCATACGAGCTACTGC
TCATAGCTAGTGTCGGTGCCAGTTTTAGAGCCCGGATTGCTCTGTGACTG
TCGAATTAGAGCTGCCTTCGAACACACGTTGGTACCAGCAGCAGCAGACG
GCAGTACCTACGTACTTAGCAAATCTAAAAGCTGTGCATTTAGACTATTT
AGCTTTCAGTGGGTGCCCTGCACACCTTAGAACCTGCTCTTGCAGATTGA
TCTCTTCAGGGATCAAGAAGCTATGTTCGTATAGGAACCATGCTCCGTCT
GTCTCGCAGCTGGCTCTCTTTTTCGACTCTCCCTCTCTCTCCCCTATCCA
ACTCGTGCGATACTACGTCTAAATGCTTTGCAAAAGCTAGCACCCAATTC
TGCAACCACCTCTGCAACCACACACCTCTACTACACAACCTCAAAGTCAC
GTTGTTGATCACTTCCTGCAAGCTGAAATATCGGCTTTTCCATGGGTGTA
TATGCTGAGGCCCTGTGCTTGTCGGGCGTTGCAGAGTGCGCGTCCTTAAA
CCTCTCCCGCATATGCGTCCCCTTAAAAACAAATCAAAATTGCATTTTGT
AGACTGTGATGTGAAGAGGGAAGAAGAGTACAGGAGCCTCGGAGGGTTGG
TTCAAGCCTACCCACACCGACCGGGCGTTTGGTCCAATAGGACCCCCGCC
CGCCTCATATTTAAATTGATGTCAGGTATCCATGCAGACCAAGAGCAGGC
GAAGCTCCCTTGTATGTAGCTAATTAGTGGCCCGAGGAAGACAAGCAATT
GATTGCTTGAGCCGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
TTTTTTCCCCTGAGGGGCTGTTTTTTCCTCCCTTCCCGCAGCGCAAAAAA
AAACAAGGGGGGGGGGGGAGGGGCNNNNNNNNNNTGTAGCTAATTAGGGG
CGCGAGGAAGACAAGCAATTGATTGCTTGGGCCCCCCCCCCCCCCCCCCC
CCCCGTCGCCCACTTTTTAATCGCGCAGATGGCAGTTTTCTTCACGAACC
TGGAAGACGCGAAAGACAACTTGAGGGAGATGGTCCAGTCGCCCGCTTAT
AAGGACAATGCCCGCATCCTGGTCGTGAGCATGGAGAAGGCGTATGGCAT
GGTTAAGGCAGGGCCAAGGTCCACGGGGTGCGTTTTCGTGCTGCTGATGC
TTCTGGGGCTGTTCTTGCTGAAATGCTGCTGCTGCTGCTGCTGCTGCTGT
TATCGCTGTTGGTCGCTGCTGCTCTTGCTTCACCCGTTTTGTGGAGACAG
TTTTTTCTCGCCAAGTAAATGCCTCCGAGAGTGAGGGGGGGTGCATAGGT
CATACGCGACAGTTACTCTCTTCTCCGCCTCGCTTGGCCGCCTGCTTTCT
GGCACTCCCATATCGTACAAACGTGCCGATGGTTGCTCGCGGCGTGCAGG
TTCCAGCGCGACGATGGCAGAGAGGAGTCAATGGACTTCAAGCTGGAGCG
GGACATGCACTCGTTCTTCAAAGCGAAAAAGCTGGGCCTGGACGTAAGCC
CCGCTGCCCAAAAGATCCCGATCCCAGTGTTCTACGCCGAGGGTCTGGAG
GTGAGGACACGCGAAACGGGGGGCGCGACGGTGTAGCGCAGAATGGTTAC
GGGGGTTACCGAATTAAGGACATTCGATTTCCAGCACAACTGGAGGGAAC
ACCATGCCGGGGTGGGGTTTGCTTGCTTCGGACACCGGCATCAAGAGGCG
CATGCTTTCGAGGATGAGATGGGGCGGAATTTACGCCGCACGAGATAAGG
TGTGGCCGACCTGCCACGTCCCTTCGTCTCACCAGCTCAACCTCGTGTGC
TCTGTGCCGTGACTCTCTGAACGTATCATTGTGTTGGTGCAATCACCTCA
TGGTCTTCCATCTCAACCGCCATGAGCGCCTGTATGTAGAGGTGGACAGA
CTTGACACGAAATGGAGGGACAACGAAACCTCAGTTGGTTAGTTGATGTT
TCCACCTTCCACGCTTTTTCTCTCCACGCCGCCTCACTCGCTGTGCCAGT
GTGTGTGTGCTGTCTGTTAGCTTAACACCCCTTCCCTCCTCCGGCCCTCC
TCCGGCCCCCTCCGGCCCCACCGTTTGGGAACCTACATATCTGTGTACCT
CCTGGGATATTATATATTGCCAGATCAAGCGGGACGGAGGGTTGGTGCAG
CCGCTGTTTATGGACCCGGCGGACCTGGTCGCGGCGTGGAAAAAAGCGGT
CGCGTCAAACCCGGACATGCCCGCAGCGCCGACGGTCAAGGTATGCCCCA
ACGCAACGAATACCTCAGCAGAGCCATCTTTTCCGGCCCGTGGTGTCGAC
TGCCACTACTGCTGGTGCCTGCTGTTGTTGCAGGGCGGATGGGAGCCGTC
CCGGCCTACAGTGGCAGGGGAGTTGAGGTCGCTGCGTGTGGTATCGAGCA
AATGAATAAGTGGTCTTAAAAGTGCTCGGATGCAAAGAGCTTCAAAAGCT
AAGGTCCGGCGAGTTGAGGTCGCTGCGTGTGGTATCGAGCACATGAATAA
GTGGTATTAAAAGTGCTCGGATGCAAAGAGCTTCAAAAGCTAAGGTCCGG
CGAGACTCCCCTGTCCAAGTACTGTAGTCTAGCCCTCACTTTTTGTATTT
GCCCTCAGCTTTGCATCCACCTCATATACCATCGCCTGTCCTGGTCCCAC
CGCGCGACACAAACATCGGTCTCGATCGATCCAGGTGTTCAACATGCCGG
ACGTGATCGTGGCGATGGAGCTGACAGACGAGTTCAACCAGTTTGGGTTT
TTCGCGTCCACCGACAGCGCCGAGTTCATTCGAGAGAGCCGAGAAGACAA
GAAGCCCATCCCGAAGCCTCGACTGGGCAGAATGTGGGCCTTTTGAAGTG
GGACAAGCTTTAACCTGTCGCTTCTTCTTCCCCGGGGTGTTGTGTACTGA
ACGGAGGGAGCGTGAAGGTTGTAAAACCAGGCCAGCCGTCGACGCACATA
TCCCGGCCTTTCTTTCCTTACTCACCGGCGATTTTTGCGATGATGGGGGT
TTCCAGGCTGTCGTATTTTTTTTGCAGCTCGTTGGCACGAGGCTTTGGGG
CCTGGCTATCTCTCACCTATTGCAGCGTAGAGTGGATTTGCTTGCAGATG
TTGCGTTTGTTTTGGGGGTGATTCCCTCTTTCCTTTCCACAGGTTGTTGC
GCCCTCGGAATCCCATAGCCGAATCGCACGGCCTGTGCCCATCGTGGCAT
CGCTTTTGGGCCACCTACCTGTTGTCGGTCCGTGTCTTTCCCACCTTTGC
TGCCGTATTCAGGGCAAGGAAGACTGTTTGTCTCTGCACGGGAAATGGAC
TTGTTCTTTTGTTGGAGTTGTGGGTGTGTGAGGTGACTGACTCCACTCCC
CCGGGGCGGAAAAAGTCCGGCTGATTTGCTGTGTTGCTCCTATTTCGCCC
GTTGCGGACCTCCGGGGTTTTCCTGCAGAGCTTTAAACCACTCCTGCATC
GGTTTCTCGTGAATATTATAGCATGCGAAGCGTGTGGATACTACGAAAGA
GTACATGCTCCTGCCGTTCGTTGCGCTTCCTGAATCGATACCGCTGGTGT
GACATTGGGGTGTTGGCACTTGGCTCGCTTCCCTCTTGGAGCTTGTGAAC
TCACTGATGACTTGCAAGCGCTGTATTTGTTGGTGCTCTTGTGTTTCGAA
GTTGTAATATCAGCGTTGGGGGTCACGTGTTATGTCGGTGGCATGTACCA
TCTGTCCCTCAAAATCAGGCTTGCATCGATCAGACATGTCACCAGTTGGT
GCGAGAAAGGCGTTGGAGGGGGTTAACCCTCGCTTTCCACACACGCTCTC
CCTTCCCTGCTACGGCAGACCTACATACCTGCGTCGTACTTCAAAGTTTA
AAGAAATGTATAAATGGCTCTCTACGGCATCCCGTGCCGGCAGCATCACA
CACACAAAAAAAAGGTCGCATGCGCCAAATTGGTCCGTCGGAAAACAGGC
GTGGCGCAAAGCACATGGGAAAATTGAAAACCACGTGCCTACCTACCGTG
CAGAAGGCTGCGGTGTTCTCACACGCTGCTCACACGGAGAAAAGCCTGAC
AGAGTTCCATCAACCTTCCGCAACCATAAAACCTCCTGCTGCCGCAACGG
GGACTGAAACACCCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7439:1640..6856+

>mRNA_L-elsbetiae_contig7439.16326.1 ID=mRNA_L-elsbetiae_contig7439.16326.1|Name=mRNA_L-elsbetiae_contig7439.16326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2364bp|location=Sequence derived from alignment at L-elsbetiae_contig7439:1640..6856+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCCTGCCGGCGGAGTGATTGCAGCTGTGGCCACGGCGGTCGTTGC
AACGAGGGTTTCGCACGCTTTTGTGCCGCCAGCGTCTTGCGCTTCTTCAT
GGCGAATGGGAGCGGCGCCTCAACGTCAACAACACCCGGACACGTGCTCG
GCCATCGACAACCGACGCTTTCGACAAGCGAGCGCAGCTGCTACGGCGGC
CTTGCCAGCGTCGGCACCGGAACAGGCGGCAGGCGAAGCCGCAACAGCCT
CAGAAAACGCTGAGCTTTCTTGCTCCGGAGTCGGAGAGGAGGTGCAGCAG
AAAAGGCGGTGGGCGGCAGGAGCCCGCCGAGCTCTCGCTCGAGGCGCGGC
TTCCTTTGCCACCTTCACCCTCGGCGCTACGGCGCTGTCGGGACTGTCCG
CCGGCGTGCAGCACCGGCTCAACGCCGGAGACGGTGCAGCCGTGGTGTCG
ATACCGGGCGCGACGAAGTCGGCGGAGGCATCCGTGTTCAAGCCGTTCAG
CAAGCGCACGGTGGACGAGAAGCTCGCCAACCTGCCGGCCTTCATGGTGA
CCAACGCGAAGGGATCGCCGTACCTCTCTCCCACGGAGCCCAACGAGCCC
CAGATGAGGCCTGCCGGCGGAGTGATTGCAGCTGTGGCCACGGCGGTCGT
TGCAACGAGGGTTTCGCACGCTTTTGTGCCGCCAGCGTCTTGCGCTTCTT
CATGGCGAATGGGAGCGGCGCCTCAACGTCAACAACACCCGGACACGTGC
TCGGCCATCGACAACCGACGCTTTCGACAAGCGAGCGCAGCTGCTACGGC
GGCCTTGCCAGCGTCGGCACCGGAACAGGCGGCAGGCGAAGCCGCAACAG
CCTCAGAAAACGCTGAGCTTTCTTGCTCCGGAGTCGGAGAGGAGGTGCAG
CAGAAAAGGCGGTGGGCGGCAGGAGCCCGCCGAGCTCTCGCTCGAGGCGC
GGCTTCCTTTGCCACCTTCACCCTCGGCGCTACGGCGCTGTCGGGACTGT
CCGCCGGCGTGCAGCACCGGCTCAACGCCGGAGACGGTGCAGCCGTGGTG
TCGATACCGGGCGCGACGAAGTCGGCGGAGGCATCCGTGTTCAAGCCGTT
CAGCAAGCGCACGGTGGACGAGAAGCTCGCCAACCTGCCGGCCTTCATGG
TGACCAACGCGAAGGGATCGCCGTACCTCTCTCCCACGGAGCCCAACGAG
CCCCAGATGGCAGTTTTCTTCACGAACCTGGAAGACGCGAAAGACAACTT
GAGGGAGATGGTCCAGTCGCCCGCTTATAAGGACAATGCCCGCATCCTGG
TCGTGAGCATGGAGAAGGCGTATGGCATGGTTAAGGCAGGGCCAAGGTCC
ACGGGATGGCAGTTTTCTTCACGAACCTGGAAGACGCGAAAGACAACTTG
AGGGAGATGGTCCAGTCGCCCGCTTATAAGGACAATGCCCGCATCCTGGT
CGTGAGCATGGAGAAGGCGTATGGCATGGTTAAGGCAGGGCCAAGGTCCA
CGGGGTTCCAGCGCGACGATGGCAGAGAGGAGTCAATGGACTTCAAGCTG
GAGCGGGACATGCACTCGTTCTTCAAAGCGAAAAAGCTGGGCCTGGACGT
AAGCCCCGCTGCCCAAAAGATCCCGATCCCAGTGTTCTACGCCGAGGGTC
TGGAGGTTCCAGCGCGACGATGGCAGAGAGGAGTCAATGGACTTCAAGCT
GGAGCGGGACATGCACTCGTTCTTCAAAGCGAAAAAGCTGGGCCTGGACG
TAAGCCCCGCTGCCCAAAAGATCCCGATCCCAGTGTTCTACGCCGAGGGT
CTGGAGATCAAGCGGGACGGAGGGTTGGTGCAGCCGCTGTTTATGGACCC
GGCGGACCTGGTCGCGGCGTGGAAAAAAGCGGTCGCGTCAAACCCGGACA
TGCCCGCAGCGCCGACGGTCAAGATCAAGCGGGACGGAGGGTTGGTGCAG
CCGCTGTTTATGGACCCGGCGGACCTGGTCGCGGCGTGGAAAAAAGCGGT
CGCGTCAAACCCGGACATGCCCGCAGCGCCGACGGTCAAGGTGTTCAACA
TGCCGGACGTGATCGTGGCGATGGAGCTGACAGACGAGTTCAACCAGTTT
GGGTTTTTCGCGTCCACCGACAGCGCCGAGTTCATTCGAGAGAGCCGAGA
AGACAAGAAGCCCATCCCGAAGCCTCGACTGGGCAGAATGTGGGCCTTTT
GAGTGTTCAACATGCCGGACGTGATCGTGGCGATGGAGCTGACAGACGAG
TTCAACCAGTTTGGGTTTTTCGCGTCCACCGACAGCGCCGAGTTCATTCG
AGAGAGCCGAGAAGACAAGAAGCCCATCCCGAAGCCTCGACTGGGCAGAA
TGTGGGCCTTTTGA
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