mRNA_L-elsbetiae_contig7433.16323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7433.16323.1
Unique NamemRNA_L-elsbetiae_contig7433.16323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7433.16323.1 vs. uniprot
Match: A0A6H5JGY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY4_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 9.310e-56
Identity = 125/232 (53.88%), Postives = 140/232 (60.34%), Query Frame = 1 
Query:   49 MGSIRGCLPPLEGNRRRRTLDGY---EMGVGPHA---TGGGDALSDLQTKLAHIQWRKHANDKSIRKALDTTKRLQERDMMLQLSVDREGERERWTEAIVRDELARPAEISEMFLKDWERREEENRTRQLQETTLHLKSLKRVERAVQSKQGGWGSTSTTAXXXXXGSSAEG-GGREQEVNTQDAAQLLKERLRRLRIGVKEKRRELRRSASSSKDLKGSFSATNFKTGRGR 723
            MGS+   LPPLEGNRR R  D +      V P +   +G GDALSDL TKLAHIQWR+HANDKSIRKAL+TTKRLQERDMMLQLSVDREGE                                         T LHLKSLKRVER V SK+      S           AEG GG E+ +  Q+  + LKERLRR+R+GVKEKRRELRRSAS SKD +G+FSAT FKTGRGR
Sbjct:    1 MGSVYRALPPLEGNRRCRPQDEFGSSRENVPPRSIIVSGSGDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE-----------------------------------------TKLHLKSLKRVERTVTSKK-----CSAITAQRPESRDAEGRGGGERALEQQEDDEALKERLRRVRVGVKEKRRELRRSASYSKDQRGTFSATGFKTGRGR 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7433.16323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGY4_9PHAE9.310e-5653.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7433contigL-elsbetiae_contig7433:1111..5462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010000.1
Exons4
Model size944
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7433.16323.1prot_L-elsbetiae_contig7433.16323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7433 1159..5247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.1252828-UTR-L-elsbetiae_contig7433:1110..11581622816828.1252828-UTR-L-elsbetiae_contig7433:1110..1158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7433 1111..1158 +
1691683844.2963648-UTR-L-elsbetiae_contig7433:1110..11581691683844.2963648-UTR-L-elsbetiae_contig7433:1110..1158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7433 1111..1158 +
1622816828.1938722-UTR-L-elsbetiae_contig7433:5247..54621622816828.1938722-UTR-L-elsbetiae_contig7433:5247..5462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7433 5248..5462 +
1691683844.3493671-UTR-L-elsbetiae_contig7433:5247..54621691683844.3493671-UTR-L-elsbetiae_contig7433:5247..5462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7433 5248..5462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.1408987-CDS-L-elsbetiae_contig7433:1158..13371622816828.1408987-CDS-L-elsbetiae_contig7433:1158..1337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 1159..1337 +
1691683844.3073273-CDS-L-elsbetiae_contig7433:1158..13371691683844.3073273-CDS-L-elsbetiae_contig7433:1158..1337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 1159..1337 +
1622816828.1536508-CDS-L-elsbetiae_contig7433:3776..38491622816828.1536508-CDS-L-elsbetiae_contig7433:3776..3849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 3777..3849 +
1691683844.317636-CDS-L-elsbetiae_contig7433:3776..38491691683844.317636-CDS-L-elsbetiae_contig7433:3776..3849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 3777..3849 +
1622816828.1647983-CDS-L-elsbetiae_contig7433:4495..46181622816828.1647983-CDS-L-elsbetiae_contig7433:4495..4618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 4496..4618 +
1691683844.3280363-CDS-L-elsbetiae_contig7433:4495..46181691683844.3280363-CDS-L-elsbetiae_contig7433:4495..4618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 4496..4618 +
1622816828.180796-CDS-L-elsbetiae_contig7433:4941..52471622816828.180796-CDS-L-elsbetiae_contig7433:4941..5247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 4942..5247 +
1691683844.340054-CDS-L-elsbetiae_contig7433:4941..52471691683844.340054-CDS-L-elsbetiae_contig7433:4941..5247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7433 4942..5247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7433.16323.1

>prot_L-elsbetiae_contig7433.16323.1 ID=prot_L-elsbetiae_contig7433.16323.1|Name=mRNA_L-elsbetiae_contig7433.16323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MGSIRGCLPPLEGNRRRRTLDGYEMGVGPHATGGGDALSDLQTKLAHIQW
RKHANDKSIRKALDTTKRLQERDMMLQLSVDREGERERWTEAIVRDELAR
PAEISEMFLKDWERREEENRTRQLQETTLHLKSLKRVERAVQSKQGGWGS
TSTTAQQQSEGSSAEGGGREQEVNTQDAAQLLKERLRRLRIGVKEKRREL
RRSASSSKDLKGSFSATNFKTGRGRW*
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mRNA from alignment at L-elsbetiae_contig7433:1111..5462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7433.16323.1 ID=mRNA_L-elsbetiae_contig7433.16323.1|Name=mRNA_L-elsbetiae_contig7433.16323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4352bp|location=Sequence derived from alignment at L-elsbetiae_contig7433:1111..5462+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCGAGAGCGTCGTCAGCGCGACCATCGAAGCCCTCACTTTGAGTGAAT
GGGCTCCATTCGAGGGTGTCTCCCACCTCTTGAAGGAAACCGTCGGCGCC
GAACATTGGACGGGTACGAAATGGGCGTAGGACCGCATGCAACCGGGGGA
GGCGACGCGCTGAGCGATCTCCAAACAAAGTTGGCGCACATTCAATGGCG
AAAACACGCGAACGACAAGAGCATAAGGTATCAACAAGGGTGTTGAGTAC
CAGCAGTAGCTGGGAATGCGGAAGACTATGTAGGGGCTTGCATCAAGAGA
AACGAGGAGGAGGCATATTTCTACCTATATCTATCTAGTGTAGAGAGTCT
ATGCTGTTATCATTCCGTAAGAGGATGCGGGTCTTGGCGCGGATCGGCGT
CTCCGCACGGGTCGATGGTCTAGGCACAGAGGTGCGAAAAAAAAACAGGT
TCCAAATGATTTAATTCGATTATCGCACAGGTATCGGCGTCTGGATACCT
TCGGTGAGGTTTGGCAATACTACAAGTGGTGTTCAGAAATTTAGGCAAAT
CAAAATGCGGAAATACTGCGCGGGCTTGTTCCCGGACTTCCGGTGCGCAA
GTAAGTATGTAGACTTGTGGCCTTTTGTATCCGCTTTATAACGGAAATTT
AGAATGTGTTTGTTATTTTGTCCGAAAGATCGCGAAACTGAAACACCCAC
AAGAGACACGCACAAAAAAACACAAGAGACCGAGCGACCAGACCAACTTC
TACAAAATACCAGTACCGGCAAGAAATCTGGAAGTACCGTAATGCCTTAC
CTGGCCTCTAGGAAAAGCCGACAGACGGAAGTGAACATCCTAGTGGGCCA
CCACTACGTCATTCTTCGTCCTGGCACCAAGCGAAACCCCTCTTTTGCCG
TCCACGACCTCTTGCAAACAAAGCATTCTAGCGCCAAGCTGCTCTGTACC
AACTACTCCGCACCAGACGTCTGCTGGCAATCCTAAGAACATACTTGGCA
GAGGGAGTGTGCGTTCAAAGCACCCCATACCGCCGCTGTGATTTGTTCAG
AATCGCCCGGATCGGCGCCATGGCACAGGGGTGTGCATTGAAATTTTAAG
CCAAGTCATTTAATTCGATGTCCGCATAGGGATCAGCGTCTTCGCACGGG
TCGGCGTCTTGTCACCTCTGTGCGATAAAAATCTTAGAACGCAAACATTA
AAAAGATGACCGCACAGTGTGCCAGGACCCGCATCCTTATGGTATGTAGA
TGTAGACAAAATTGTTTTTGTTTTTTTTCTTCACATTTAATTCTACTGCT
CGATAGCCTCCTTGCCACGAGGGCGTCTTGCTAGAGTACTGAACCGTGGT
CGCACAGAAAAATGCCTTTCCCCGAGCCCCCCACTTCCTCCTTCTGCGGT
GCTTGCCTAAGACTTTTGTCGCGGGAAGGGTTTAACTGTCATTTTCCCTC
GTCGACCGTAAGGTCGAATTTGTTTAAATACACACGCCAAACGTTATCCA
CTGGCAGGGACAGAAACGAGAGAAAAAACTCACTAGAAAAAGTCGCTTCC
GCCGGGAATCGAACCCGTGACCTGCCTGCTAGAATGTGTACGGGGATACC
AAGGGTTAGGGTTAGGGTTAGGGTTAGAGTAAGTGCTACTTGTATATGTA
TTGTAGATATGTGCTCCCTCCTACCCAAAATTAATCTTACGCGTGTTGCA
CCTCCCACAAAAATTAGTCCGCAACATACTATCCCACGTAGACCCCCCAG
TTGATGTAATTTCACCAAAGCTCCTGCTGTAGTATTGATCCTAACTAAGA
CGATTAGAGGAGCGCTTATTATGTACCGGAGTATCAACTACAACGTGGCA
AAACCGCAGACAGATTGGCCAATGGCAGCGAGTGGTGCGGCCAGCTGAAG
TTGCTCAATCGGACGCGGAGAGGAGCGTTTTCCGATACATTTGGAGGCAG
ATATAGGAGCGTGTTCTTTTCCTTCTCTTGAGCAGAGGGGCAGAGTTGTG
TAAGCGCTCTGGGGTTGATCCCTTAATAAGACGGCAAATGTCCTTTCAAT
GCTCACATACCTTACGGTCGTCGAGTTTCAAGCGATTTGGTGCTCTCCTG
AGAGTGGTGCACACGATTGAAATGGCCTCCCAAGCCGCGAATTTGAACTG
AAAATAAACAGCAACTGCCGTGTCTGTCTAGCACCGGTCACCCAGCAGCT
CTCCTCTTCTAAGACAAATGACGTCATAAATACACCTTCCGGACGCAGGG
AATGGCGGGAGACATTGAGGCCTCCTTCTCCTTTCGTTGCAATCGGTTGG
GTGTGTGAGGAGCATCAGCGGTTACGATGTACATGACCGCGTTGGTTCAG
AGCAAAACGAATTGGGGAGAGGACACGAAAACAAAAATCCTGCCGAGCTC
GAACGCCTCGCATTTTGAAGGCAGTGTTTGTCATGGGGGCTGCAACACGT
GTGTACTTACTCCTAATACAAACAATAGGTAATCCTACAACAAAACAAAC
CGTGGGCAAGAAGCAAACCACGAACTGCTGTTGTGCGGCTTGTATAAATA
TGTCGTCGGAGGGAATATTTATTTGCTTGAAGTTTTGGTCGGTTTGCACA
GCCACACATACATCCACAAGAAAACTGAATTGGCATTGCATTTTATCACC
CCTGCCGTCGTTACAGGAAGGCTCTCGACACTACCAAACGCCTGCAAGAG
CGCGATATGATGCTGCAGCTCTCTGTCGATCGGGAAGGGGTAAGCTCTAC
GACCGCCTGAGTGTTCGTCGAAAGAGTCAAATACTGAACGAAGATTTTAT
GGCGTGATAAATACATGTACATATGCCTCCGTCGTCAGGTCGAGCGAATC
CCAATCAAAGTGTGACTGTTGGTGGTTTGTCTTCATAGAGACATAAAGAT
ATTTAGTCTACATACGGAGGTCTTCGTATGTACATACACGTTTCATGGTA
GGCGGTTAATCAAGTCCATTTGTCTACGTTAGAACAACTGGCTTATCTTG
AAAGACAGGATATCCAGCGCCCGCCGGTATATCTCTCTCCGACTCCTGCG
CCTTCTGCAAGTAGACCACTGTGTTTGCAAGTAAGACTTTTAGAGTAACT
ACGCACGGTCGAACTGTAGGGGACTTACTTGTGCAGGTGCTTTCCCATTG
CAGAGAGCTCTCTACCATGGGCGTGTGGATGCTACATCACTCGTGTGTGA
AGAGAGTTCGGGAATACGAACAGATATTTGCAGCCTGGAATGGCTCAGTT
GATTTAGAACCCCAAAGAATGCCCACAGTTTAGTCTGACAATTGTAAGGG
CGAAGTACACGTTTGTCAGATTCGTGAAGTTTCTTTTTGTTTCGTTTTAA
TTTACTGCATGTGGACGATGCAACGTTCTAAACAGGAGAGAGAACGATGG
ACCGAGGCCATCGTGAGAGACGAGCTAGCACGCCCAGCAGAGATAAGCGA
AATGTTTTTAAAAGATTGGGAAAGGCGAGAAGAAGAGAACAGAACGAGGC
AGCTACAGGTGCGACATCCGACACGCAACAACCGCAGCAGGCAATGTAGA
AATGTACAGTTGAACAGCACTACAACTTGGGAGACCTCGGCCGCTGAACG
CTACTGGGAGATTTTCTCACCAAGTTTTGCAATGCCACCCACTGTTGCAC
TGAAGGATGTTTCTGCTCTATGCAGCACCGCCCGAGTCTACCAGGGGGTG
CTCCGCTCCTTTGTCTGAACCACTCGCGTAGACAATGCACCTGAAACAAT
AAATGTCCAGATATATCTACGTAACATGCACGCGTAACCCAACGGTTCAT
TTTCAACGGGCACGTCATGGACTGGCACCAGGAAACAACGCTTCACCTCA
AAAGCCTCAAGCGAGTGGAACGTGCGGTCCAATCAAAGCAAGGAGGGTGG
GGTAGTACCAGCACCACGGCGCAACAGCAGTCTGAAGGCAGCAGTGCCGA
GGGGGGGGGGAGAGAGCAAGAGGTGAACACGCAAGACGCCGCCCAGCTAT
TGAAAGAAAGGCTTCGGAGATTGCGCATCGGGGTGAAGGAGAAGCGCAGA
GAGCTGCGACGCAGCGCCTCGTCTTCGAAAGACCTCAAGGGGTCGTTTAG
CGCAACCAATTTCAAGACTGGGAGGGGACGGTGGTGATGGCGGTGTTGTA
GATGGCGAGCGGGGTTCTCCTTGTGGCCACAACACTCGCCATGGTGCCAA
AAGCAACTTGTCAAAGGGTACTATTACATCGTGTGCTGCGCAACTACTTC
GAAGCGTGTACGTGGTGCTGGTGTAATTATCAGGTGTACCTACCTACAGG
GGCGCTCAGCGTTCTCCATCGACCAAGGGGAGCCTTTCGAGAATAAAGCG
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7433:1111..5462+

>mRNA_L-elsbetiae_contig7433.16323.1 ID=mRNA_L-elsbetiae_contig7433.16323.1|Name=mRNA_L-elsbetiae_contig7433.16323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig7433:1111..5462+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCCATTCGAGGGTGTCTCCCACCTCTTGAAGGAAACCGTCGGCG
CCGAACATTGGACGGGTACGAAATGGGCGTAGGACCGCATGCAACCGGGG
GAGGCGACGCGCTGAGCGATCTCCAAACAAAGTTGGCGCACATTCAATGG
CGAAAACACGCGAACGACAAGAGCATAAGATGGGCTCCATTCGAGGGTGT
CTCCCACCTCTTGAAGGAAACCGTCGGCGCCGAACATTGGACGGGTACGA
AATGGGCGTAGGACCGCATGCAACCGGGGGAGGCGACGCGCTGAGCGATC
TCCAAACAAAGTTGGCGCACATTCAATGGCGAAAACACGCGAACGACAAG
AGCATAAGGAAGGCTCTCGACACTACCAAACGCCTGCAAGAGCGCGATAT
GATGCTGCAGCTCTCTGTCGATCGGGAAGGGGAAGGCTCTCGACACTACC
AAACGCCTGCAAGAGCGCGATATGATGCTGCAGCTCTCTGTCGATCGGGA
AGGGGAGAGAGAACGATGGACCGAGGCCATCGTGAGAGACGAGCTAGCAC
GCCCAGCAGAGATAAGCGAAATGTTTTTAAAAGATTGGGAAAGGCGAGAA
GAAGAGAACAGAACGAGGCAGCTACAGGAGAGAGAACGATGGACCGAGGC
CATCGTGAGAGACGAGCTAGCACGCCCAGCAGAGATAAGCGAAATGTTTT
TAAAAGATTGGGAAAGGCGAGAAGAAGAGAACAGAACGAGGCAGCTACAG
GAAACAACGCTTCACCTCAAAAGCCTCAAGCGAGTGGAACGTGCGGTCCA
ATCAAAGCAAGGAGGGTGGGGTAGTACCAGCACCACGGCGCAACAGCAGT
CTGAAGGCAGCAGTGCCGAGGGGGGGGGGAGAGAGCAAGAGGTGAACACG
CAAGACGCCGCCCAGCTATTGAAAGAAAGGCTTCGGAGATTGCGCATCGG
GGTGAAGGAGAAGCGCAGAGAGCTGCGACGCAGCGCCTCGTCTTCGAAAG
ACCTCAAGGGGTCGTTTAGCGCAACCAATTTCAAGACTGGGAGGGGACGG
TGGTGAGAAACAACGCTTCACCTCAAAAGCCTCAAGCGAGTGGAACGTGC
GGTCCAATCAAAGCAAGGAGGGTGGGGTAGTACCAGCACCACGGCGCAAC
AGCAGTCTGAAGGCAGCAGTGCCGAGGGGGGGGGGAGAGAGCAAGAGGTG
AACACGCAAGACGCCGCCCAGCTATTGAAAGAAAGGCTTCGGAGATTGCG
CATCGGGGTGAAGGAGAAGCGCAGAGAGCTGCGACGCAGCGCCTCGTCTT
CGAAAGACCTCAAGGGGTCGTTTAGCGCAACCAATTTCAAGACTGGGAGG
GGACGGTGGTGA
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