mRNA_L-elsbetiae_contig743.16318.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig743.16318.1
Unique NamemRNA_L-elsbetiae_contig743.16318.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig743.16318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig743contigL-elsbetiae_contig743:2629..3014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.6128633-CDS-L-elsbetiae_contig743:2628..29911622816827.6128633-CDS-L-elsbetiae_contig743:2628..2991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig743 2629..2991 +
1691683843.9238951-CDS-L-elsbetiae_contig743:2628..29911691683843.9238951-CDS-L-elsbetiae_contig743:2628..2991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig743 2629..2991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.6246433-UTR-L-elsbetiae_contig743:2991..30141622816827.6246433-UTR-L-elsbetiae_contig743:2991..3014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig743 2992..3014 +
1691683843.9334853-UTR-L-elsbetiae_contig743:2991..30141691683843.9334853-UTR-L-elsbetiae_contig743:2991..3014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig743 2992..3014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig743.16318.1prot_L-elsbetiae_contig743.16318.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig743 2629..2991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig743.16318.1

>prot_L-elsbetiae_contig743.16318.1 ID=prot_L-elsbetiae_contig743.16318.1|Name=mRNA_L-elsbetiae_contig743.16318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
ILREEREREARGFRLLCVRVRVCVLGGGGVVVDDPEGVHLRSRSRDPTKP
GARTAPSGFRRRQSHRRGMRNECREDACLLWPTTDKYVRRAVWASRKYLR
EMSRDMPPRRCTRESTGSRR*
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mRNA from alignment at L-elsbetiae_contig743:2629..3014+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig743.16318.1 ID=mRNA_L-elsbetiae_contig743.16318.1|Name=mRNA_L-elsbetiae_contig743.16318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=386bp|location=Sequence derived from alignment at L-elsbetiae_contig743:2629..3014+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTGCGCGAGGAGAGAGAGAGGGAGGCGCGGGGATTTCGATTGTTGTG
TGTGCGTGTGCGTGTGTGTGTGTTGGGAGGGGGGGGCGTTGTCGTGGATG
ATCCGGAAGGTGTGCATCTACGTAGCCGCTCTCGCGATCCCACCAAGCCG
GGAGCGAGAACGGCGCCTTCGGGATTTCGTCGTCGACAAAGCCACCGACG
GGGCATGAGAAATGAATGCCGCGAAGATGCATGCCTATTATGGCCGACAA
CAGACAAGTATGTACGTCGGGCCGTGTGGGCATCGAGGAAGTACCTACGG
GAGATGTCGCGCGACATGCCGCCACGGCGGTGCACGAGAGAGTCAACGGG
GAGCAGACGGTGAAATCAACAACAAGAGCAGGCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig743:2629..3014+

>mRNA_L-elsbetiae_contig743.16318.1 ID=mRNA_L-elsbetiae_contig743.16318.1|Name=mRNA_L-elsbetiae_contig743.16318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig743:2629..3014+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTGCGCGAGGAGAGAGAGAGGGAGGCGCGGGGATTTCGATTGTTGTG
TGTGCGTGTGCGTGTGTGTGTGTTGGGAGGGGGGGGCGTTGTCGTGGATG
ATCCGGAAGGTGTGCATCTACGTAGCCGCTCTCGCGATCCCACCAAGCCG
GGAGCGAGAACGGCGCCTTCGGGATTTCGTCGTCGACAAAGCCACCGACG
GGGCATGAGAAATGAATGCCGCGAAGATGCATGCCTATTATGGCCGACAA
CAGACAAGTATGTACGTCGGGCCGTGTGGGCATCGAGGAAGTACCTACGG
GAGATGTCGCGCGACATGCCGCCACGGCGGTGCACGAGAGAGTCAACGGG
GAGCAGACGGTGAATCCTGCGCGAGGAGAGAGAGAGGGAGGCGCGGGGAT
TTCGATTGTTGTGTGTGCGTGTGCGTGTGTGTGTGTTGGGAGGGGGGGGC
GTTGTCGTGGATGATCCGGAAGGTGTGCATCTACGTAGCCGCTCTCGCGA
TCCCACCAAGCCGGGAGCGAGAACGGCGCCTTCGGGATTTCGTCGTCGAC
AAAGCCACCGACGGGGCATGAGAAATGAATGCCGCGAAGATGCATGCCTA
TTATGGCCGACAACAGACAAGTATGTACGTCGGGCCGTGTGGGCATCGAG
GAAGTACCTACGGGAGATGTCGCGCGACATGCCGCCACGGCGGTGCACGA
GAGAGTCAACGGGGAGCAGACGGTGA
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