mRNA_L-elsbetiae_contig7429.16315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7429.16315.1
Unique NamemRNA_L-elsbetiae_contig7429.16315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7429.16315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7429contigL-elsbetiae_contig7429:3234..3695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.4348373-CDS-L-elsbetiae_contig7429:3233..36951622816827.4348373-CDS-L-elsbetiae_contig7429:3233..3695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 3234..3695 +
1691683843.812763-CDS-L-elsbetiae_contig7429:3233..36951691683843.812763-CDS-L-elsbetiae_contig7429:3233..3695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 3234..3695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7429.16315.1prot_L-elsbetiae_contig7429.16315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7429 3234..3695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7429.16315.1

>prot_L-elsbetiae_contig7429.16315.1 ID=prot_L-elsbetiae_contig7429.16315.1|Name=mRNA_L-elsbetiae_contig7429.16315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
CGRAASSTHGSEAGNGGGAELLQERQHQRPPSPTPATDAAPALRPAGAIA
TPAAPRQSSVDGVGNGTAADGTTPALPTAPGSASGGHAAIPGTDPAQHQE
QVPVDGLESGSSPVAAAAAAAATAATAGSGADKGPVNGGVEIDGGGGVKV
GVAG
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mRNA from alignment at L-elsbetiae_contig7429:3234..3695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7429.16315.1 ID=mRNA_L-elsbetiae_contig7429.16315.1|Name=mRNA_L-elsbetiae_contig7429.16315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig7429:3234..3695+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGGCGCGCCGCTTCATCGACACACGGAAGCGAGGCGGGGAACGGAGG
GGGGGCGGAGCTGCTGCAAGAGCGGCAGCATCAGCGTCCACCGTCTCCTA
CCCCTGCTACGGACGCCGCCCCGGCGCTGAGACCTGCCGGGGCGATTGCA
ACTCCCGCCGCCCCCAGACAGTCTTCGGTCGATGGCGTCGGCAATGGGAC
CGCTGCGGATGGTACCACACCCGCGCTGCCCACAGCACCGGGCAGCGCGA
GCGGAGGACACGCGGCGATACCTGGAACAGACCCTGCTCAGCACCAGGAG
CAAGTACCGGTCGATGGACTGGAGTCCGGTAGTTCACCGGTGGCGGCGGC
GGCGGCGGCGGCGGCAACAGCGGCAACGGCGGGGTCGGGAGCTGACAAAG
GCCCCGTCAACGGTGGAGTGGAAATCGACGGCGGTGGCGGCGTTAAGGTC
GGGGTTGCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7429:3234..3695+

>mRNA_L-elsbetiae_contig7429.16315.1 ID=mRNA_L-elsbetiae_contig7429.16315.1|Name=mRNA_L-elsbetiae_contig7429.16315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig7429:3234..3695+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGGCGCGCCGCTTCATCGACACACGGAAGCGAGGCGGGGAACGGAGG
GGGGGCGGAGCTGCTGCAAGAGCGGCAGCATCAGCGTCCACCGTCTCCTA
CCCCTGCTACGGACGCCGCCCCGGCGCTGAGACCTGCCGGGGCGATTGCA
ACTCCCGCCGCCCCCAGACAGTCTTCGGTCGATGGCGTCGGCAATGGGAC
CGCTGCGGATGGTACCACACCCGCGCTGCCCACAGCACCGGGCAGCGCGA
GCGGAGGACACGCGGCGATACCTGGAACAGACCCTGCTCAGCACCAGGAG
CAAGTACCGGTCGATGGACTGGAGTCCGGTAGTTCACCGGTGGCGGCGGC
GGCGGCGGCGGCGGCAACAGCGGCAACGGCGGGGTCGGGAGCTGACAAAG
GCCCCGTCAACGGTGGAGTGGAAATCGACGGCGGTGGCGGCGTTAAGGTC
GGGGTTGCCGGGTGCGGGCGCGCCGCTTCATCGACACACGGAAGCGAGGC
GGGGAACGGAGGGGGGGCGGAGCTGCTGCAAGAGCGGCAGCATCAGCGTC
CACCGTCTCCTACCCCTGCTACGGACGCCGCCCCGGCGCTGAGACCTGCC
GGGGCGATTGCAACTCCCGCCGCCCCCAGACAGTCTTCGGTCGATGGCGT
CGGCAATGGGACCGCTGCGGATGGTACCACACCCGCGCTGCCCACAGCAC
CGGGCAGCGCGAGCGGAGGACACGCGGCGATACCTGGAACAGACCCTGCT
CAGCACCAGGAGCAAGTACCGGTCGATGGACTGGAGTCCGGTAGTTCACC
GGTGGCGGCGGCGGCGGCGGCGGCGGCAACAGCGGCAACGGCGGGGTCGG
GAGCTGACAAAGGCCCCGTCAACGGTGGAGTGGAAATCGACGGCGGTGGC
GGCGTTAAGGTCGGGGTTGCCGGG
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