mRNA_L-elsbetiae_contig7428.16312.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7428.16312.1
Unique NamemRNA_L-elsbetiae_contig7428.16312.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7428.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7428contigL-elsbetiae_contig7428:1969..3142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size335
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7428.16312.1prot_L-elsbetiae_contig7428.16312.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7428 2117..3141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.2361467-UTR-L-elsbetiae_contig7428:1968..21161622816827.2361467-UTR-L-elsbetiae_contig7428:1968..2116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 1969..2116 +
1691683843.679614-UTR-L-elsbetiae_contig7428:1968..21161691683843.679614-UTR-L-elsbetiae_contig7428:1968..2116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 1969..2116 +
1622816827.2809184-UTR-L-elsbetiae_contig7428:3141..31421622816827.2809184-UTR-L-elsbetiae_contig7428:3141..3142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 3142..3142 +
1691683843.726348-UTR-L-elsbetiae_contig7428:3141..31421691683843.726348-UTR-L-elsbetiae_contig7428:3141..3142Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7428 3142..3142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.2517943-CDS-L-elsbetiae_contig7428:2116..21431622816827.2517943-CDS-L-elsbetiae_contig7428:2116..2143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 2117..2143 +
1691683843.6925442-CDS-L-elsbetiae_contig7428:2116..21431691683843.6925442-CDS-L-elsbetiae_contig7428:2116..2143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 2117..2143 +
1622816827.267419-CDS-L-elsbetiae_contig7428:2982..31411622816827.267419-CDS-L-elsbetiae_contig7428:2982..3141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 2983..3141 +
1691683843.7154818-CDS-L-elsbetiae_contig7428:2982..31411691683843.7154818-CDS-L-elsbetiae_contig7428:2982..3141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7428 2983..3141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7428.16312.1

>prot_L-elsbetiae_contig7428.16312.1 ID=prot_L-elsbetiae_contig7428.16312.1|Name=mRNA_L-elsbetiae_contig7428.16312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MFHADVTRQVATGWKRMGKQAQSTPGSKIATSSNRGAWLESLWNYHTECH
TFPHVSHRWRS*
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mRNA from alignment at L-elsbetiae_contig7428:1969..3142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7428.16312.1 ID=mRNA_L-elsbetiae_contig7428.16312.1|Name=mRNA_L-elsbetiae_contig7428.16312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1174bp|location=Sequence derived from alignment at L-elsbetiae_contig7428:1969..3142+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGGCAAGCGAGCCCGTCAAGCCGCCGCGGACGATGTAATTATCCTAG
AACACAACGGCCGAGCAGCGGCAGTGGCAGCAACTGGCGAGACGGTCTTC
ACAAGGCCGGATGCAAGCGTCGCAATCAAGCCTGAACACTAGATAGCCAT
GTTTCATGCGGACGTCACTCGACAGGTATGCGGGATAAATAGCCGGTGTG
TTTGTATGAGTTGGGGCGGGGTTTGTATTCTGCATCATCCTCGCCGCATG
TATATCGTAGCCATCATGGGATAACGTAGTTTTGCGTTCGACGGTATCAC
CATTGACACGGAGTGTGGATTACGGTGGTACAACCCACCAGAAATGCAGC
AGTTATTAGTCGACCGCCTTTGGTGAAAGTGTTTTTTGCGGCTTGCTTTG
TTGTTGTTATGTTCGTCTTTCTAACAACGCCAACCTTTTTCAATGCTGAC
CCCTTTGTTTTGAGGCGATGTTCGCGGGTACACTGCCTTCGGGTTAAAAG
TTGATTCTGAACGGGCGCAGTGGATCCATTTGTGCACTGGGGGAAATAAT
CATCCAAAACCCACCTCTAGCTCAAGTTTTTTATGGTTCCGGACACGTTC
TTGTGGTCTTCTGCTTTCGAGATACCCAGAACAAACACGACGCCTACGTT
ATTTCTTGCAAGTCTGTTTGAGAGTTTGGTAGCTAAAGTCCTCTCAATTC
CGAGAATCCACACAAAAACAAAGTCCTGGAAAACACATTTTTGAAAGATA
AGCAGATAATCAAAAATGAAACCTAACCCACATTGGAGACAGGACTCCCG
TGAGAATTTTCGGTATTCCATATAGTGACGTAATATTGGGCCGGCCGAGT
AGAAAAACACCTTACATTTTTCACACTTTGGACATGAAGTGCTGACGGCT
TGTACTAAAAACATACCCGTAACTACTAACAAGCGAGCTGCTTGTCGGCA
CTCTGTGGCTCAGAAATGTTAATTATATCTTCCCTCTTCCCCTCGTATGA
TGGCCCGCGCATAGGTGGCGACCGGGTGGAAGCGTATGGGCAAACAGGCA
CAGAGCACTCCTGGCAGCAAAATAGCCACATCATCCAATCGTGGGGCTTG
GCTGGAGAGTTTATGGAACTACCACACGGAATGCCACACGTTTCCACACG
TTTCGCACCGGTGGCGAAGTTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7428:1969..3142+

>mRNA_L-elsbetiae_contig7428.16312.1 ID=mRNA_L-elsbetiae_contig7428.16312.1|Name=mRNA_L-elsbetiae_contig7428.16312.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig7428:1969..3142+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCATGCGGACGTCACTCGACAGATGTTTCATGCGGACGTCACTCG
ACAGGTGGCGACCGGGTGGAAGCGTATGGGCAAACAGGCACAGAGCACTC
CTGGCAGCAAAATAGCCACATCATCCAATCGTGGGGCTTGGCTGGAGAGT
TTATGGAACTACCACACGGAATGCCACACGTTTCCACACGTTTCGCACCG
GTGGCGAAGTTGAGTGGCGACCGGGTGGAAGCGTATGGGCAAACAGGCAC
AGAGCACTCCTGGCAGCAAAATAGCCACATCATCCAATCGTGGGGCTTGG
CTGGAGAGTTTATGGAACTACCACACGGAATGCCACACGTTTCCACACGT
TTCGCACCGGTGGCGAAGTTGA
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