mRNA_L-elsbetiae_contig7425.16310.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7425.16310.1
Unique NamemRNA_L-elsbetiae_contig7425.16310.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 7.030e-52
Identity = 91/165 (55.15%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:    1 MAQAEYPGAPDTAAYEAGDGLAIFAQLKQAHDSEPGRVREFVFAAANAVCKLYCEHDEAPQPLPAGLSRDARKAAAGAHPGLCGYFQSAIIAGVDFGDVAATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVEGWMETAFS 495
            MA + YP  P    ++ GD LA+  Q+K+ H S P RVREFVF AA AV    C HD+ P+ LP GL+RD   AAA  HPGLCG++    +AGV + DV ATAERR V VT  VFRNQ C+DAA  L A G GVQL+R ECFT   RAVFPG+G  + W+ET FS
Sbjct:    1 MAVSAYPDTPLVEDFKGGDTLAVLRQMKEVHYSHPERVREFVFDAALAVGAGSCVHDDPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRGVSVTFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFS 161
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.650e-36
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:   79 LKQAHDSEPGRVREFVFAAANAVCKLYCEHDEAPQPLPAGLSRDARKAAAGAHPGLCGYFQSAIIAGVDFGDVAATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVEGWME 483
            +K+  +S PGRVREFVF A  A     C HD+  + LP GL+RD    AA  HPGLCG +    +AGV F DV A AERR V VT  V  NQ C+DAA  L   G GVQL+R ECFT   RAVFPG+G  + W++
Sbjct:    1 MKEVRESHPGRVREFVFDAVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVY----LAGVSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWVD 131
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.720e-27
Identity = 68/163 (41.72%), Postives = 89/163 (54.60%), Query Frame = 1 
Query:   16 YPGAPDTAAYEAGDGLAIFAQLKQ-------AHDSEPGRVREFVFAAANAVCKLYCEHDEAPQPLPAGLSRDARKAAAGAHPGLCGYFQSAIIAGVDFGDVAATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVEGWME 483
            Y   P+    +AG+ +A   Q+         A +     VR F F  A  V   YC HD AP+P+P+     A+KAAA  HPGLCG + + IIA V   DV +    ++       FRNQACYD A A++AHG GVQL R ECFTH  RAV+PG+  + GW +
Sbjct:   69 YMPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAA-EHPGLCGVYHAHIIAAVRTEDVTS----QSGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM-GWRQ 225
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.050e-26
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:   28 PDTAAYEAGDGLA-------IFAQLKQAHDSEPGRVREFVFAAANAVCKLYCEHDEAPQPLPAGLSRDARKAAAGAHPGLCGYFQSAIIAGVDFGDVAATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVE 471
            PD   Y+AG+ +A       + A    A +     +R F F  A  V   YC HD AP+P+P+     A+KAAA  HPGLCG   + IIA V   DV +    R+       FRNQACYD   A++  G GVQL R +CFTH CRAV+PG+  +E
Sbjct:    6 PDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAA-EHPGLCGVHHAHIIAAVRTEDVTS----RSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEME 155
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.580e-20
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  211 ARKAAAGAHPGLCGYFQSAIIAGVDFGDVAATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVEGWMETAFS 495
            A K AA  HPGLCG + + IIA V   DV A    R+       +RNQACYD   A++A G GVQL R ECFTH CRA++PG G  +  +  AFS
Sbjct:    8 AAKVAAAEHPGLCGVYHAHIIAAVKIQDVLA----RSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFS 98
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BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 7.800e-5
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  280 VDFGDVAATAER---RNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVFPGDGVVEGWMETA 489
            +    V +TA+R   R+  V ++ F  +A +D +  ++A G G+Q++R +CFT  CRAV+PGD  V   +  A
Sbjct:    3 IHIAPVQSTAQRKRGRSRSVGVR-FPTKASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDA 74
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7425.16310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE7.030e-5255.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE1.650e-3651.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE5.720e-2741.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE1.050e-2641.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE9.580e-2049.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G2_9PHAE7.800e-535.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7425contigL-elsbetiae_contig7425:8449..9642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004470.1
Exons2
Model size501
Cds size501
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.190815-CDS-L-elsbetiae_contig7425:8448..85951622816827.190815-CDS-L-elsbetiae_contig7425:8448..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7425 8449..8595 -
1691683843.659834-CDS-L-elsbetiae_contig7425:8448..85951691683843.659834-CDS-L-elsbetiae_contig7425:8448..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7425 8449..8595 -
1622816827.2019897-CDS-L-elsbetiae_contig7425:9288..96421622816827.2019897-CDS-L-elsbetiae_contig7425:9288..9642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7425 9289..9642 -
1691683843.66945-CDS-L-elsbetiae_contig7425:9288..96421691683843.66945-CDS-L-elsbetiae_contig7425:9288..9642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7425 9289..9642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7425.16310.1prot_L-elsbetiae_contig7425.16310.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7425 8449..9642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7425.16310.1

>prot_L-elsbetiae_contig7425.16310.1 ID=prot_L-elsbetiae_contig7425.16310.1|Name=mRNA_L-elsbetiae_contig7425.16310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MAQAEYPGAPDTAAYEAGDGLAIFAQLKQAHDSEPGRVREFVFAAANAVC
KLYCEHDEAPQPLPAGLSRDARKAAAGAHPGLCGYFQSAIIAGVDFGDVA
ATAERRNVPVTLKVFRNQACYDAAGALSAHGGGVQLSRCECFTHGCRAVF
PGDGVVEGWMETAFSG*
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mRNA from alignment at L-elsbetiae_contig7425:8449..9642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7425.16310.1 ID=mRNA_L-elsbetiae_contig7425.16310.1|Name=mRNA_L-elsbetiae_contig7425.16310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig7425:8449..9642- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGGCTGAGTACCCAGGAGCCCCCGACACAGCAGCCTACGAGGC
TGGGGACGGGCTGGCCATATTTGCACAGCTGAAACAAGCCCATGACAGCG
AGCCTGGCCGCGTGCGGGAGTTTGTCTTTGCGGCAGCGAACGCGGTGTGC
AAGCTGTACTGCGAACATGACGAAGCGCCACAGCCGCTGCCAGCAGGGCT
GAGCCGTGATGCGCGCAAGGCAGCTGCTGGTGCACACCCAGGCCTCTGCG
GCTATTTCCAATCAGCCATCATCGCTGGAGTGGACTTCGGAGACGTAGCG
GCAACGGCAGAGAGGCGAAATGTTCCCGTGACGTTGAAGGTTTTCAGAAA
CCAGGTGAGGACCAAACGTGGGAGCCAACGCGCTAGTGTTGACGCGACAG
GTGTTTCTTAGGTCGTTTGTCGACACTGCTCTACTACTGCTACTGTTATT
TGGTGTGCTGTGCCTTCATCGGTAAGAGTCGTAGTCTATGCATGTACACA
AGACAGGAGTTCATTTTTTGGGCTCATTTATTTTCTTGTTGCCGGCGGGC
ATGGAACCACGCAGCGCTCGTGCCAAGCTCTCAGCCCCTGCCTCTCCTTG
TGCCTCTTATTACTGCTGGCGCCGTTTCTGTTAGGGTTAGGTTACTCTGC
CTTCGTGGAAAGTTGGCTGTTACCATCGTCTGTCTGCCGTTCGGTACAAA
AGAAAATAAACCGATACATTTAGACTATAGTTGACGACATACATACAAGA
CAATAACCTCGCGACATGTCGATCCATTACCCATTACGTGTGTAGGTATG
TATATATGTTGTACTGCGTGAAACGAATCAGGCAGCGGCGCTGAACTCTG
AACACATCCTCAGGAATCCCATAAACAAACGTCGAGAAGATTCGTGCGCA
TTGGCTGGAAAACATGCTGTGGGGGTGACGTGCGATTTCATGGGTACATA
ACCATATTTCTCACACAATGTATTTCAGCTCCACCTTCGTTCGCCCACGC
TGTGTGCCGCGATTGTGCCCCCTGATTTTTTTTGTGCCGTCATCCAGGCC
TGCTACGACGCAGCGGGGGCTCTGTCCGCCCACGGAGGCGGTGTTCAACT
TAGCCGCTGCGAATGCTTCACGCACGGATGCAGAGCGGTGTTCCCAGGAG
ATGGGGTGGTTGAGGGATGGATGGAGACAGCTTTTAGTGGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7425:8449..9642-

>mRNA_L-elsbetiae_contig7425.16310.1 ID=mRNA_L-elsbetiae_contig7425.16310.1|Name=mRNA_L-elsbetiae_contig7425.16310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig7425:8449..9642- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGGCTGAGTACCCAGGAGCCCCCGACACAGCAGCCTACGAGGC
TGGGGACGGGCTGGCCATATTTGCACAGCTGAAACAAGCCCATGACAGCG
AGCCTGGCCGCGTGCGGGAGTTTGTCTTTGCGGCAGCGAACGCGGTGTGC
AAGCTGTACTGCGAACATGACGAAGCGCCACAGCCGCTGCCAGCAGGGCT
GAGCCGTGATGCGCGCAAGGCAGCTGCTGGTGCACACCCAGGCCTCTGCG
GCTATTTCCAATCAGCCATCATCGCTGGAGTGGACTTCGGAGACGTAGCG
GCAACGGCAGAGAGGCGAAATGTTCCCGTGACGTTGAAGGTTTTCAGAAA
CCAGATGGCGCAGGCTGAGTACCCAGGAGCCCCCGACACAGCAGCCTACG
AGGCTGGGGACGGGCTGGCCATATTTGCACAGCTGAAACAAGCCCATGAC
AGCGAGCCTGGCCGCGTGCGGGAGTTTGTCTTTGCGGCAGCGAACGCGGT
GTGCAAGCTGTACTGCGAACATGACGAAGCGCCACAGCCGCTGCCAGCAG
GGCTGAGCCGTGATGCGCGCAAGGCAGCTGCTGGTGCACACCCAGGCCTC
TGCGGCTATTTCCAATCAGCCATCATCGCTGGAGTGGACTTCGGAGACGT
AGCGGCAACGGCAGAGAGGCGAAATGTTCCCGTGACGTTGAAGGTTTTCA
GAAACCAGGCCTGCTACGACGCAGCGGGGGCTCTGTCCGCCCACGGAGGC
GGTGTTCAACTTAGCCGCTGCGAATGCTTCACGCACGGATGCAGAGCGGT
GTTCCCAGGAGATGGGGTGGTTGAGGGATGGATGGAGACAGCTTTTAGTG
GCTAGGCCTGCTACGACGCAGCGGGGGCTCTGTCCGCCCACGGAGGCGGT
GTTCAACTTAGCCGCTGCGAATGCTTCACGCACGGATGCAGAGCGGTGTT
CCCAGGAGATGGGGTGGTTGAGGGATGGATGGAGACAGCTTTTAGTGGCT
AG
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