mRNA_L-elsbetiae_contig7424.16308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7424.16308.1
Unique NamemRNA_L-elsbetiae_contig7424.16308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7424.16308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7424contigL-elsbetiae_contig7424:4912..5267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.9765527-UTR-L-elsbetiae_contig7424:4911..49251622816826.9765527-UTR-L-elsbetiae_contig7424:4911..4925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 4912..4925 +
1691683843.5049508-UTR-L-elsbetiae_contig7424:4911..49251691683843.5049508-UTR-L-elsbetiae_contig7424:4911..4925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 4912..4925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.989841-CDS-L-elsbetiae_contig7424:4925..52671622816826.989841-CDS-L-elsbetiae_contig7424:4925..5267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 4926..5267 +
1691683843.5191984-CDS-L-elsbetiae_contig7424:4925..52671691683843.5191984-CDS-L-elsbetiae_contig7424:4925..5267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 4926..5267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7424.16308.1prot_L-elsbetiae_contig7424.16308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7424 4926..5267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7424.16308.1

>prot_L-elsbetiae_contig7424.16308.1 ID=prot_L-elsbetiae_contig7424.16308.1|Name=mRNA_L-elsbetiae_contig7424.16308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MYFVCVPRLMLLLYDRLLVCVRTDRFLQYNVPLSQAFCTCSNLRVQEKLA
VLVSKFLRVFAAKFARIQTTRIFILRQLHSAQVSHFYVCVLQMDDCPLTW
FPASESAAPFALGT
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mRNA from alignment at L-elsbetiae_contig7424:4912..5267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7424.16308.1 ID=mRNA_L-elsbetiae_contig7424.16308.1|Name=mRNA_L-elsbetiae_contig7424.16308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=356bp|location=Sequence derived from alignment at L-elsbetiae_contig7424:4912..5267+ (Laminarionema elsbetiae ELsaHSoW15)
CACGACAGAGACTCATGTACTTCGTGTGTGTTCCACGTCTTATGTTACTG
CTGTACGACCGCCTCTTGGTCTGTGTCCGTACGGATCGCTTCCTACAATA
CAATGTACCTTTGTCTCAGGCGTTCTGTACATGCTCCAATTTAAGAGTGC
AAGAAAAGTTAGCTGTTCTTGTTTCAAAGTTCTTGCGGGTTTTCGCGGCC
AAGTTTGCTCGCATACAAACGACACGCATCTTTATCCTGCGGCAGCTGCA
TAGCGCGCAAGTCAGCCACTTCTATGTATGCGTGCTGCAAATGGATGACT
GCCCTCTGACATGGTTCCCTGCGTCAGAATCGGCAGCACCCTTTGCGCTA
GGCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7424:4912..5267+

>mRNA_L-elsbetiae_contig7424.16308.1 ID=mRNA_L-elsbetiae_contig7424.16308.1|Name=mRNA_L-elsbetiae_contig7424.16308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig7424:4912..5267+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTCGTGTGTGTTCCACGTCTTATGTTACTGCTGTACGACCGCCT
CTTGGTCTGTGTCCGTACGGATCGCTTCCTACAATACAATGTACCTTTGT
CTCAGGCGTTCTGTACATGCTCCAATTTAAGAGTGCAAGAAAAGTTAGCT
GTTCTTGTTTCAAAGTTCTTGCGGGTTTTCGCGGCCAAGTTTGCTCGCAT
ACAAACGACACGCATCTTTATCCTGCGGCAGCTGCATAGCGCGCAAGTCA
GCCACTTCTATGTATGCGTGCTGCAAATGGATGACTGCCCTCTGACATGG
TTCCCTGCGTCAGAATCGGCAGCACCCTTTGCGCTAGGCACCATGTACTT
CGTGTGTGTTCCACGTCTTATGTTACTGCTGTACGACCGCCTCTTGGTCT
GTGTCCGTACGGATCGCTTCCTACAATACAATGTACCTTTGTCTCAGGCG
TTCTGTACATGCTCCAATTTAAGAGTGCAAGAAAAGTTAGCTGTTCTTGT
TTCAAAGTTCTTGCGGGTTTTCGCGGCCAAGTTTGCTCGCATACAAACGA
CACGCATCTTTATCCTGCGGCAGCTGCATAGCGCGCAAGTCAGCCACTTC
TATGTATGCGTGCTGCAAATGGATGACTGCCCTCTGACATGGTTCCCTGC
GTCAGAATCGGCAGCACCCTTTGCGCTAGGCACC
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