mRNA_L-elsbetiae_contig7424.16307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7424.16307.1
Unique NamemRNA_L-elsbetiae_contig7424.16307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7424.16307.1 vs. uniprot
Match: D7FPG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.060e-5
Identity = 60/162 (37.04%), Postives = 72/162 (44.44%), Query Frame = 2 
Query:  287 GDGSGISRTWTRSQSPLRQLLS-ASNSRPSSPR--NNSTQGG--------RCDGDRP----------APAVVAEVAAQASTT--LSFDSGEPVLQQQQ--------QRVCLKNVLHPVCYDECHTPTEEEQAGGDGDXXXXXXXXXXXXXGAAVSADGVVSV 679
            G G   S+ WTRS SPLRQLLS AS+SRP SP+  N+    G           G +P          A  V+A  AA A        D  E   Q +Q        Q+V +KNVL PV YDECH P+E+ Q  G  D                VS+D V SV
Sbjct:   49 GGGDNSSQRWTRSHSPLRQLLSSASSSRPGSPKVGNDGLGNGIGXXXXXXXXXGMQPISSLESAHDEALGVLAGAAANAKPCDIPPSDDIERATQHKQRPXXXXXXQQVFVKNVLRPVSYDECHIPSEDGQDDGGDDGNVNPGNVSRPLPATVVSSDPVPSV 210
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7424.16307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPG3_ECTSI1.060e-537.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7424contigL-elsbetiae_contig7424:1504..4814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004830.1
Exons2
Model size2136
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7424.16307.1prot_L-elsbetiae_contig7424.16307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7424 1685..3363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.028288-UTR-L-elsbetiae_contig7424:1503..16841622816827.028288-UTR-L-elsbetiae_contig7424:1503..1684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 1504..1684 +
1691683843.5287635-UTR-L-elsbetiae_contig7424:1503..16841691683843.5287635-UTR-L-elsbetiae_contig7424:1503..1684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 1504..1684 +
1622816827.0582252-UTR-L-elsbetiae_contig7424:3363..48141622816827.0582252-UTR-L-elsbetiae_contig7424:3363..4814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 3364..4814 +
1691683843.568295-UTR-L-elsbetiae_contig7424:3363..48141691683843.568295-UTR-L-elsbetiae_contig7424:3363..4814Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7424 3364..4814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.0385783-CDS-L-elsbetiae_contig7424:1684..17541622816827.0385783-CDS-L-elsbetiae_contig7424:1684..1754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 1685..1754 +
1691683843.5431192-CDS-L-elsbetiae_contig7424:1684..17541691683843.5431192-CDS-L-elsbetiae_contig7424:1684..1754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 1685..1754 +
1622816827.0480998-CDS-L-elsbetiae_contig7424:2929..33631622816827.0480998-CDS-L-elsbetiae_contig7424:2929..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 2930..3363 +
1691683843.5565455-CDS-L-elsbetiae_contig7424:2929..33631691683843.5565455-CDS-L-elsbetiae_contig7424:2929..3363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7424 2930..3363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7424.16307.1

>prot_L-elsbetiae_contig7424.16307.1 ID=prot_L-elsbetiae_contig7424.16307.1|Name=mRNA_L-elsbetiae_contig7424.16307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MAGLEEVIKTATDGGNCCTSTPQARPSPRARKKESGDGSGISRTWTRSQS
PLRQLLSASNSRPSSPRNNSTQGGRCDGDRPAPAVVAEVAAQASTTLSFD
SGEPVLQQQQQRVCLKNVLHPVCYDECHTPTEEEQAGGDGDDGYDNSDNS
NAASGAAVSADGVVSVS*
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mRNA from alignment at L-elsbetiae_contig7424:1504..4814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7424.16307.1 ID=mRNA_L-elsbetiae_contig7424.16307.1|Name=mRNA_L-elsbetiae_contig7424.16307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3311bp|location=Sequence derived from alignment at L-elsbetiae_contig7424:1504..4814+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTACTGTCCACCCACCGCCTGGCCTGTGAGTTCCAACAGATAGGCG
CCCTTATAGTCTGCCGCCTGATGTGTTTGGGAAATACGCGAGGGACACGA
TCAGGGACCTCTACCCTCTACCACCGGGTACACTCTGTCTGTAGTTAAAA
AAAACACTGAAGAAGTACAAGCCACTCCGATATGGCTGGGTTGGAAGAGG
TGATCAAGACGGCCACCGATGGGGGAAATTGCTGCACGAGTACTCCGCAA
GGTGAGAACATTTTCCTGCTAAATTATGAGCGAGACATCCCGTCCGCGCC
GCAGTCCCACGTATGTACTACGTAGGCTTGGTCCTCCCACAAGTGGCCGA
GTTCGACAGCAGTGACCATATCTATGCGTGGGGTTAATCATTGGAGAACT
TTTCGGTGCTGATATTGTATGCTTGTGTGTGGCGTGCTCATCCCACAGTT
TCAAAGCTATATCTATTGTCATGCTCTGCAGGCATCAGTGCCGCATGGCA
GGTCGCTACCAAAACAACCGGCGCCCTGATGCTCAATGCACACATGTACA
TCCGTGTTTCGTGGGGGAACTTTGTCGGTACGGCTTACGAAGGGAAGCTA
TGTTGAGTGATTGCGCATATCGAGCGCCTTAGCAAGTACAGAAAAGGACA
CAGCAGACAGCAGTTGTCTAGGATATCTCTGTGCAAACTCATTGGATGGC
TCCGAGACAGGGGAGATGTGCCCATGTCTCATAATTTGTCGATGTAAATA
CATTTTTGGACCGATATTGTAGCGTGGCCGGGGCAATTAAACCAGTTTAG
AAATGGCCTGTCACAGGTTGGCGAGAAAATAATTCCAATTTGGTGTGCGA
GGACAGGCAATCCCACATTAGTATAGCAGCTGGCGAAGAAAGCTCCACAG
CAGTAGTTCGGACGATGGGCGCGACTGGTGTTGTACATGATTCCAGGAAT
GGTGTATCTAGGGCGATGTCGTTGTGTCGTCGAGTATTGATTTGTCATAC
ATTCGTACGTGTAAGCCGTTTTAGAGTCCTTACACTTGTAGCGACTTCGA
GAGCAACGGCTCGTGATAAAGCTACAGTAGGTAAAATATGAGGTACCAAC
ATGAAATATCCCAGTACGGTAACACGAAACACGAGCTAGAGGAGGTTTTT
CGGAAAGTATGTACATAGCTGCTGGTGAGAACCGTGTTCCAGTACAAGGC
AGTGGCACAACGTAGTAGCTTCTAGACGAATCCTTCCGACCTGACCCGTA
TCTGGTACAAATATTATCCTTCGCGAATTTCTCCGCGCATCTATATCTAT
ATCTCTACGCCTTGAGTCACGCATCGCCTCTGCAAACAAGTCGATCTCAG
CTTGACTTCGCTTTGACTCGCACACACTTGCATATGTACCTCTTCGCGTC
ATGATCTCAAACCCAAAAACCAACAGCGAGGCCTTCTCCTCGGGCGAGGA
AAAAAGAAAGCGGTGACGGCAGCGGCATATCGCGAACATGGACCAGGTCG
CAATCGCCCCTACGACAGCTTTTATCCGCATCGAATAGCAGACCTAGTTC
CCCAAGGAACAACAGCACCCAGGGCGGAAGATGTGACGGCGATCGTCCGG
CGCCGGCGGTGGTCGCGGAAGTAGCGGCACAGGCATCTACGACTCTATCT
TTTGATAGCGGGGAGCCTGTCCTTCAGCAGCAGCAGCAGCGAGTTTGTTT
GAAGAACGTGCTCCACCCTGTGTGTTACGATGAATGCCACACCCCGACCG
AAGAAGAACAAGCCGGCGGAGATGGCGATGATGGCTACGACAACAGCGAC
AACAGCAACGCCGCGTCTGGTGCCGCTGTCTCAGCCGACGGGGTCGTCTC
CGTATCTTGAGTCGGAAACGGAATAAACAACGAATCACATAAATGTAGAA
AACGAGAGGCTCCTGATCAAGTGTATATTGATAGCCAGAAGCAGCGGCTA
AATGTATAGTTCGAAGTATACAAGATAAATGTCGGACCAGGGTGTTGCCT
CGCGTAGTACGAGGAGATGGGTATTTTATGGTGATAAGAGCCAGAGAAAT
TCAGCAGCCAGAAGTCGCAAACAGCTCTCCGGGCTTTTGACAGAGTAGCG
CAGGGCTATCGCGGGTATAATTATGGGAGGAAACTACTAAGAATTAGAGT
ATCGAAAAGCTACACATGCTGTTTTGTGCTACGGCCTCGTGAGTATCGCT
TTCAACAAACGCCGTGGTGTAACTGACAGACGCGTTGGCAGTTACTCTGG
CCGATGATACTACCACACGTAGAAATAATCGATAGTCAGCAGGCGATGGG
AGAACGTTGGCCGAGGGAGGCAGGAATTGAGTTTTGAGCGATGTAAAATC
AAGGGCAACGGCCAAAACAAGGTACATATTGTGGCCAGTTGGCCAAAAAC
AGGGTATATGTGGTGTCGAACTTCAACGTGCCTCGCCTACCAAGCCCAAC
CTCACATGGAGTCTCGGAGGCTGTCCTATGACCATCAAAATAGGGCATTT
ACCGTGCACAGCGTCAATGGATGTCTACTACAGCGCGGGGGTGGGGCAGA
CACTCCGCCGTGCAACTACGCACGGCTGCGGCATGACCCTCATTTGTACA
GTAATGTGGCGGCGGGGCTATTCAGTTGGCTTTTTGGGGCGTAGGGTAAG
TAACACATTTGATTTAGGGGGCATCCGCATGCTGAGAAAATGTAAGCAGG
AATGTCACTTTTCTCGTGGGTCAGTAGGGCACTAAGGCCCTAGTCCCCGA
CAAAGAGCCCCGGTTTCCGGCCAAAAGAGGGTGTAAGAGCGGCAAACCAA
CGTGTCGCCAGAAGTTGAGTGACCACGCGAAAGTGCACCGTGTACTTTTT
CGGCCAAAAGAGGGTGCTTGGTAGGAATTTTTACTTGAACACAGAGCAGG
ACACCCTGTTTTGGCCGGAAAATTACAAGGTGTACCTTGCTTTGGCCGCT
ACCCTAAAATCAAATCAACTGTGAGAGGGCGAGGACGCCTTGTGGAGGCT
GAGCCGCTTATCAGGCGTTATTTCTCGAAAGCTACACTCGCTGGTTAAAC
GGTTAAGTCCTGGTCCACCGGGCGCTCTTCGTGCGGAACCAGAAGAGGAC
AAGGGGCCGGCAACTCTTCGACCTTCTTGCGAGATGTTTTTCGGCTGTAC
CAGGTTTTCTCTCATTTTCTCCCGTTTCTCCCGTATCAAGAAAACGAGAC
GGCTGCGCTGAAAAATAATGAGAAAGGCGTGCAGCCGTCTCGAGCCCAGG
TGCTTCCGTTGCGGATTGTACTACAGGATGCATTCGACAGCTCCTTAGGA
CGTGTTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7424:1504..4814+

>mRNA_L-elsbetiae_contig7424.16307.1 ID=mRNA_L-elsbetiae_contig7424.16307.1|Name=mRNA_L-elsbetiae_contig7424.16307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig7424:1504..4814+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGGTTGGAAGAGGTGATCAAGACGGCCACCGATGGGGGAAATTG
CTGCACGAGTACTCCGCAAGATGGCTGGGTTGGAAGAGGTGATCAAGACG
GCCACCGATGGGGGAAATTGCTGCACGAGTACTCCGCAAGCGAGGCCTTC
TCCTCGGGCGAGGAAAAAAGAAAGCGGTGACGGCAGCGGCATATCGCGAA
CATGGACCAGGTCGCAATCGCCCCTACGACAGCTTTTATCCGCATCGAAT
AGCAGACCTAGTTCCCCAAGGAACAACAGCACCCAGGGCGGAAGATGTGA
CGGCGATCGTCCGGCGCCGGCGGTGGTCGCGGAAGTAGCGGCACAGGCAT
CTACGACTCTATCTTTTGATAGCGGGGAGCCTGTCCTTCAGCAGCAGCAG
CAGCGAGTTTGTTTGAAGAACGTGCTCCACCCTGTGTGTTACGATGAATG
CCACACCCCGACCGAAGAAGAACAAGCCGGCGGAGATGGCGATGATGGCT
ACGACAACAGCGACAACAGCAACGCCGCGTCTGGTGCCGCTGTCTCAGCC
GACGGGGTCGTCTCCGTATCTTGACGAGGCCTTCTCCTCGGGCGAGGAAA
AAAGAAAGCGGTGACGGCAGCGGCATATCGCGAACATGGACCAGGTCGCA
ATCGCCCCTACGACAGCTTTTATCCGCATCGAATAGCAGACCTAGTTCCC
CAAGGAACAACAGCACCCAGGGCGGAAGATGTGACGGCGATCGTCCGGCG
CCGGCGGTGGTCGCGGAAGTAGCGGCACAGGCATCTACGACTCTATCTTT
TGATAGCGGGGAGCCTGTCCTTCAGCAGCAGCAGCAGCGAGTTTGTTTGA
AGAACGTGCTCCACCCTGTGTGTTACGATGAATGCCACACCCCGACCGAA
GAAGAACAAGCCGGCGGAGATGGCGATGATGGCTACGACAACAGCGACAA
CAGCAACGCCGCGTCTGGTGCCGCTGTCTCAGCCGACGGGGTCGTCTCCG
TATCTTGA
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